morexGenes - Barley RNA-seq Database

Contig contig_1565201
Source Contig contig_1565201
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1565201 (6867 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1565201

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13243	3	3276 bp	MLOC_13243.1	Available	Available	LOC_Os01g53070.1, FRAME:+3, EVALUE:0.0, 13101.m05559 protein ATP binding protein, putative, expressed
CDS Structure of MLOC_13243

Contig Sequence (6867 bp)

>contig_1565201 6867 assembly3_WGSMorex_rbca.fasta
CCGCCGCCCCTCCGAGCCCCCACCGCGCGGCGGCCCCCCCCCCCCCCCCGGCGGCGCTGA
TGCGCCAACTCCTCGCGCTCCAGCGCTCGCGGGCGCGGACGCTCCGGGACCCCTCCACGC
GCCGCTCCGTCGAGTCCTCCAAGGTGGCGGCCGACCCCGACCCGTACACCGACGACGACG
GTGGCGGCGGCGTCGATCTCCCCGCCAGGTCCCGACGCAGCGCCAAGGCCGACGGGGCGC
TCAAGACGCTCCTCGACCAGCTCGCCGACAACCCCCACCCCAAGGCGGCCAGGCGCCCCC
GCCGCCGCTTCAAACGCGGGGTCGGGGCAGGGGCCGCCCGCCGTGCCGCCGGTAAGGCCC
CAGATCGCGCCGCCGCCTCGCTCTCCCTCAACTCCAGCTCCCAGGAGGCCGTCTGCGGCA
ACAAGTACCTCTTCCGCGACGGCGAGGACTCGCGCAACGTCTGCGGCATTCCGTGGAACT
GGTCGCGCCTCCACCACCGCGGCAAGTCTATCCTCGACTTGGCCGGCCGCAGCCTATCGT
GCGGGCTCTCCGACCCCAAGTCCGCCGAACCTGAAGCAGCGGCCGCCGCCTCGCGCGCGC
ACCGCAGCGGTTCACACTCTCTTTTCCCGGTCAAGTCCGAGAGGTTGGCTTCCTCCACCG
GCTCCGACTCTGACGCTTTGCCTCTGCTCGTCGAGGCCGCCACCTCCGGGGCACGCAGTG
GCATTGGACGCATGACCGGGAGCTACTCCGGGGAGCTCGGGCTATTCTCCAACCGGAGCA
GCGAGATGGACTCTGACCTCTTGTCCGAGGCGCGCTCTGGGACACGGGGCTCTCTGCGAA
GCCGCAGCCGGCACCGGAGCCTGACACAGAAGTTCGCGCCGAGGACGTTCAAGGACGTGG
TCGGACAGAGCTTGGTGGTGCAGGCGCTGTCCAACGCCGTCCTACGGAGGAAGGTTGGGT
TGGTATATGTCTTCTATGGGCCGCACGGCACGGGGAAGACATCTTGCGCGCGCGTCTTCG
CCAAGGCGCTCAACTGCCACTCCGCCGAGCATCCACGGCCCTGTGACTCGTGCATTTCGT
GCATCGCGCACAATGTTGGTAAAAGCAGGAGCGTGATGGAGATTGGACCTGTAGGCAACA
TCGACATGGACGGCATTGTGGATGTTCTTGACAATGTCATGCTGTCACCGGCACCATCAC
ACTATAGGGTCTTTATATTTGATGACTGCGACACATTGCCAGCAGACACATGGAGCATCA
TCTCCAAAGTCATTGACCGGGCACCCCGCCATGTGGTGTTTATCCTTGTTGGTCCCAACC
TCGACCTTCCTCATATCATCCTGTCGAGATGTCAGAAGTTTTTTTTTCCCAAGTTGAAGG
AGTGTGACATCGTCAACACATTGCAGTGGATTTCCACCAGTGAAAGTCTAGATGCAGATA
GGGATGCATTGAGGTTAATCGCATCCCGTTCAGATGGATCATTGAGAGATGCTGAGATGA
CTCTTGACCAGCTGAGTTTGTTGGGGCAAAGGATTTCTCTGTCTCTTGTCCAAGAACTTG
TAAGATATTTTGCAAGCATCATTATACCATCAATCTTTTTATCTTGAAAATATTATTTCG
CAAGCATGACCATACCATCAACATTTACGTTTTGAAGAACGAACTATATGATGTAGATTC
AATACCTGGTTTCCTTCTGGTTCAAACAGAAGGTGTCATCAACTAATAATTTAGTTTTTT
TTGTTTGAACCTGTATTTTGTCAAGAAGTTAATTAGACATGGTATGGCAACTTCAGCTGA
CAAATATAGTTGAAATATCACATGGTTGGAATAATCGGCACAGGCATTGAATGGTGTCTC
TTTGGTATAAATTTGGTATTTGAAATATCACATAGTTTAAATACAGTTAAGGAACCCCAC
AAAAAAAAAACAGTTCAGGAAGTCACTGAGTTAAACCCCCTGTCAGAATTTTAATGCTCC
TTGGTTGCAAACTTGCAATTCTTGTTTTGACAACAATACAACTTAGCTGCTTGTTTATGT
CACAGGTTGGTTTGGTATCCGATGATAAACTGGTTGATTTGCTTGATTTGGCACTATCTG
CTGACACTGTGAACACAGTGAAGACATTACGAGACATTACAGAAACCGGAGTTGAGCCTT
TGGCACTGATGTCTCAACTTGCCACGATAATTACTGACATCCTGGCTGGTTCCTACATAT
TTGCAAGAGAAAGACCACGAAGAAAGTTCTTCAAACGTTCAACCTGTAAGCATCGTCTTT
TTTTTTTCAAGCATGGATAATTCAAAACAATCTGACACTATTTTCTTATGTGGGCTATCT
CTGCTAAGACTATGAGGTCAATCATCTGGTTGTCTGGTTGACATGCTTTTCCTCCCTATG
CCTTGCGGTTAATATTTTGCAACCACTTAATGTAGTGTTCTGGTATTACTAATTTCAGTG
TCAAAAAATGATATGGAGAAACTGCGCCAGGCCTTGAAAACACTATCGGAAGCTGAAAAG
CAGTTGAGAGTCTCCAATGACAAGGCAACATGGCTTGCGGCTGCTCTGCTTCAGCTTGCT
CCTGATAAGCAGTATATGGTGCCAAGTTCATCAACAAGTACGAGTTTCAACCACGGTGTA
TTGGCCGGTTCCCTTCCTGGTAAGGATGTAGCAAGGCACTCGATTATTGAGCATAATGGT
AACATGGCAAGCACTTCTTACGGGGAAAGGAGAACCACTGAACATACATCAAATCACCAT
GGTTCACCCACTGTTACCAAAGTGAACGAACGATCTAAACATAGCAAAACTGACAATGAA
ATAATCTGGCAAGCGGTGCTTGAGAGTATTCAGTCAGATACACTACGAAAAATGATGGCC
AAAGAAGGAAAGCTAGGATCTGTCAGCCTAGGCACTGGTAAGCTTCAAAATCTAACATCC
ATTTCAATTTTCAAATGACAAGTCTTTTTTTCCTTTTGTCCTAGAAGATGAAATATATAG
CTTCAGTACTCACAGAAACAGAGATGGCAAGCTCCTGTAGTATTGTGTTGATAATAAGAC
AACATGACATTTGCCAATTACTTTTATATTATCATTATCGGTTATTCAAGTAAATGCTTG
GCACTTTGCTGAAGGCAGTCGCAGTATTCATGGTTAACTTGCATCTAGGCGAAGTAACTA
ACTATAACATTTTATCTAAATAAGGTATACAATTTTTTTGTTATAAGTAAATGTCACAGT
TTTCTTCAAGTCCGAAAGCATACATTGGAAGTAGCAATCTATGAATGAAACTATAGCTTA
GCTGATAAACTCACCAGCTTATAGTTAGGGATGCAAGTGTGTCAGCCCATTGGATCACAT
CATTTAGTTAATGATTCAGTTCCTAGTCAACTGGTTGTCCACTTTGTATAGAAATGAATT
AGCCGAAATGAACTATGATGGGGTCAATGGTTTGGCGCTGCCATGCCTCCAACTTGTAGT
TGTGCTATGTTGAATTACTATCTCCTTGGACAGATATGTTAATGTTTAGCTTGTTGTTCT
ACCAGATTGTTTTTTAACATCCGCTTCTTTTCTTCCTACAGCACCGACAGTGCAACTGAT
ATTCAGCTCACATGTAAATAAGTCCAAAGCTGAAAACTTCAGGGGACAAATTCTGCAGGC
GTTTGAGTCTGTTCTTCATTCTGCTATAATACTTGAAATCAGATATGAATCAAAAAATGA
TGCGGGAGCAGGTCATGATCCATCTATGTTTACTCACCCGGAGAATGACTCTGACATGAT
ATTAAGGAGATCCTTCAGTAAACATAGCCCGCTTTCATCTGGAGGTGAAACCCTCATCAG
GAGGCTTAAAAAAGACAGGGTTGTCAAGGGAGCTAGTTCTACCAAGACTAAATGGATGCA
ATCTGATCCCCATATATTAACCGAAGGCGAGATCATTGAAGTTGGACCTTCTCACATGCA
CCGGCATCCTGAAACAGATAATGCTGTTCCTAATATAAATGAAAGAAGAAATGATAATGT
ATGGGAAGAGGCTTTGTCATCACCAAACCAAGAGGCTGTGATTAAACAAGGAGGGAAAAA
TGGGAATAAACAGCGTCGACAGAATAGCATAGTAAAACGAAAGCTCTCACTTGCTCATGT
TCTCAGTAAGGCAGAGGTTTGTTCTCAACGAGGAGGCTGGTCTAGACGAAAAGCTATGTC
TATTGCAGAAAAACTGGAACAAGAGAATTTGTAAGTAACATCGTCTTACATCCTGTTCAA
ACAGCATAAATTATAGGAGTAATACTTCAGCATCTGTGTGTAAGAAATAATACATGTCAC
TACACCTTTACTCTGTGTATTGTGAAATAAAATAAAACAAAAAAAAGAAAATGTATTTTT
CAAAGATGCTCAATGCTTTTGCATGTTCTTAAGATACATTTTTGAGAGAAGGTATAAATG
GTAATATCACACTCCACTAATTGGTATTAATCGGCTGTCATGCATGGTGAGCAATCAATA
CTCTATACCAGCACGTATCATGAGAGCATTAAGATATCATTTTTGCAACAACATAAATCA
CCACTCAAATATTCTACATATGATTGAATTGATTTTGCCAGTTACAGATTTATGGTTTGT
ACTGCTCGGAGAACGATGTTTGATCGTGATAATTTTTATGCACAGGAGATTAGAACCTAG
ATCGAGGAATATACTTTGTTGGAGAACATCAAAGACTCGACGGAAGGTAATATTCATGTC
TGAGTTATGTTGGAAATAGTGTGTGGTACTAAAATAAGTGCCAGTTGGTATTGTTGCGCA
CTTGATAACTTATACTGATTGTATAGCTTGAAATTGGTGAGGAGTTGCTTGCAATTGTGG
AACTACACAAACAAGCCATGATTGTATAGCTTGAATAATGTAGTCTGGGGCGCTGGGCCC
CTTTTGAGCTGACACTGCCTAGCTGGATCTGCTGCTCTCATTTGGTCGTACCTTAATATA
GGTCTTTTCTCGAGATGAGTATACTAATTTCTGTGAGGAAACCAAACAAATTTGAAAAAG
GAAATGGTAACATCCATGCAGTGCCAAAAAGAGGAACTATCTTGTTAGGTTCATTTTTCC
TGATACATTCTTGAGGGATTTTGAATATGTTTGGAATGGCTGTAGATTTTCAAGTGAATT
AGCAACTTGTAGTGTAGACCCCTTGTCTAATAGTGATATGGTATTTGAACACAGCACAGC
TATGTTGTTTGCGCACTGGTAGTGTGCGTGAAAAATTGGCGGCAGAGTTTTTGAACCCTG
CTTAAATTGCAGTTTTTGTTCTTATGCTTATCATATATGTTTCTGTCGATGCTAATCCAA
TCATTTTTCCACAGCTCTCATCGTTTAGGGTCAGGACTGGAAGGTCACGGTCACAAGCTA
TATCGCGGCTTATCCTGTGTGGAAGATGCATCTCCACAAAATCCCCAAGATGAAAGGACA
CTAGAAGTGGTAGCTTTAAAAGCGTTTAATTTAGCATCCATAATTTATTCACTCTGTACC
TTGTAGGCTGTAGGCCTGTAGCTGTGTCAATTTTTAGGTTTTCTCTAATCTGTATATTGT
TTGTCATGTAAAAGAAAGATAGAAATGGCCTAGCAAATTCTTTTCTGTCAAATATGCGTT
GTAATTCTTTTTGAAAGCCAACAGAGTCTGTACCAGAGGCTTCACTAATAAATGGTTTCT
AGTCAGCATATACTGTGAAACAAGTACTTCCTTCGTCACGGTTTAGAAGACATGCTTGGA
AATTCTCTGGAACCCAGGTGATTTTTGATTGGTTGTGAAATGGTCTGAAAAATAACATTC
ACACTACACATGCATATAAAAGTCGATGTTGCTCGGTGATGGTCATTCACATTCACAATC
GTTGGTTCAAAAAGTACTTAGCGATTCGTACATGTCTCAACGAAGTTGTCGGTTGTTTGT
TATCGTCTGTCCGTCACGGCCGGTCAAGTCCCCCGCAGTGATCGAAGAAGAGGTAGGTAG
CGAAGCTGCCATGTTTTTTTAGCGTAGCGACACAGCCTTTTTTTTAGAATGGCGACACTG
TTTTGTTTGTTAGTCATTGTATGTGTATCAAAGCATGTTGGCATTTTTTGCTTTGCTTTT
TCGGTTTTGCTAGTTCTCAGCTAGGTGAGAAATAGTTTGGTCTCAATCACCTCTATACTT
ATTACATTAATATACTCAGATTTATACGTGTACAATTTTTTTCCTATTCCTGTCGTTGTT
TTCGGTGTCTTCTTTTTGTTTTCCTTTTTATATTAATGACCTAAATATTTAAAGTCGGGT
CGCAACTGCAAGATTTGAAATGTGGCTGTAACTGTAAATATTTAAAGTCGGGTCGCAAGT
GCAAGTATTCAAAGTCGGATGATAACTACATGTATTTGAAGTCTGGCCGCAACTGTAAGT
ATTCAAAGTCGGGTCGCAATTGCAAGTATTCAAAATCGGGCAGCAACTGCAAGTATTCAA
AGTCGCGTCGCAACTGCAAGTATTCAAAGTCGCGTCGCAATTGCAAATATTCAAAGTCAG
GTCGCAATTGCAAGTATTCGGAGTCGGGCCGCAACTGCAAGTATTCAAAGNNNNNNCGCA
ATTGCAAGTATTCAAAGTCTAATCGCAACTGCAAATATTCAAAGTCAAGTCGCAATTGCA
AGCACTCATGGTCGGGGCGTAATTGCAAGTATTTATAGCCGGGTCGCAACTACAAGTTTT
CACAGACGGGTCACAACTGCAAATCTTATTTGTGCAACAACTACATGAAAAAGCTAGAAT
CAAGTTGTTTTTTACTAAGAAAAAAACAAATTATTACATCANNNNTCATATAATAAGGAC
ACACTACTTCTTTGTACAAGAATGTTT