morexGenes - Barley RNA-seq Database

Contig contig_1565119
Source Contig contig_1565119
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1565119 (7390 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1565119

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13213	2	2143 bp	MLOC_13213.1	Available	Available	LOC_Os03g61800.2, FRAME:-1, EVALUE:0.0, 13103.m06810 protein polygalacturonase, putative, expressed
MLOC_13212	3	1498 bp	AK367079	Available	Available	None
CDS Structure of MLOC_13213

CDS Structure of MLOC_13212

Contig Sequence (7390 bp)

>contig_1565119 7390 assembly3_WGSMorex_rbca.fasta
CCTCCCTCCGCGCCCGCAAACGATGGAGGAAGCCAAGGGTAAGCATACCGTCCATCTTCC
CGCCCGCGGATCGCCACCGGCCGGCTGCAACTCAGCCCGCTCCGGATCGGTCGCGTGCTC
GCCTCTACTGATTTCCTTCTTATTAGTCAGTCTCTTTCGGAGGCCGGCAGATCGCCTGCC
GCCTCCTGCGTCGTTGGTTGATCCGCCGAGCGTGGGGCGGATCCCCGCGCGCGCGCGTGC
TGGACGGTGGGGGAAATGCGGTTGTTTCGTTTCGGATGTGCGGGTCCTCTGCTTTGCGCT
CACCCACCCAAAACAGAGCAGCAATGGCGCCCAACTGCCCGTAGAAGGGCCGAGGCAGGG
CTCTGCTTTCGCCGCATCTGGGAATTCCGCTAGTTTTGCCACAGCTAGAACAACCTGCTG
GTTTTGCGAACGATGCAGACCACGCAAAATCATGTAGAATTGGAAAAACAATGTGTCTGT
CTTGGATATGTAAAAGTGATGTCCTCCTGACCGTACGCCAGTACGTAGATTCCCAGTCCT
GTGCTCCGTTTGACAACTTTGTTTCCTGCTCCGGTTACACGCAGCTAGTCTTCCAAGTTC
ATGGGGGGTCTTGTCTGTTGGTTTGTTTCTTCTACCTAGGCTCTGGATTTTGGGTAAACC
CTGTGCAAATTATGAAGTAACTTGGATGCCTCGGTAATTTACCTTCTTCGTTCTTTTGCA
GTTGTGGAGACCAGGGATGGGACTATCTCAGTTGCCTCCGCGTTTCCCGGTCATCAGGAA
GGTACTAATTACCATTTCATCTCTCTAGTTCTTACTTAAAAGCTACCAAACTGCAAGGCA
ATGCATATCTGACCAGTGCAGGACCCTTTGCTGCATTTGTTATTTTCTGTAATTGTAGAG
CTGCTCAAAAGGCCTTCTAGCTTATGCTTATATGTTTTGCTTCGTTTAACAGCCGTACAA
GATAGGGATCACAAGTTCTTGTCGAAAGCGGTAGAAGAGGCTTACAAAGGAGTTGACTGT
GGACATGGAGGCCCATTTGGTGCGGTCGTCGTCCGTAATGACGAAGTAATAGTCGGTTGC
CATAACATGGTTCTGAACAACACCGATCCAACTGCACATGCTGAAGTCACTGCAATAAGA
GAGGTAGGGTGTCATGTGCACAGAGGTTATCCCCACCAACTGCTTGGTGCTTGCTGTCTA
CATTTGGTACTGAATATTTTCCCTGTAGTGGCCTCACATGCTGATATAGGCTGTATCCAA
TTTAGGCTTCATGCTCACCTGTATATTGTATGTTGTGCTCACCTGTCTACGCAGCTGACA
GCCTGAATGCCATATGTCCTGGTCTTTTTGCTCACTCTTCTACATGCTTCATGTTTCAGA
TTTTCAGCTTTCCTGATTCTCACATTAGTAGTTTTATTATCTCGTATCACCTTGTCAAAT
TAAGCTACTTCAGTGTGACTACATAAAGTTGACTGTTCAACCATGTTATATAATTTATTG
AAGACTGTTCAAGCATGTTATATAATTTATTGAAGACAGGGCTAAAGTTCCATAGTGATG
CAAACATACTCTACCAGCCTAACAATTGCTTTTTATTTTCATCAGAAAGGTTGGTAATGG
ATGAGTTATCATTGATGACAGCGTAGCTACTGTCATTATAGCGTAGCTACTGTCAACGTT
GGTGGATAAAATAGAACATATTTATTTTGACATAACAACATGCATTTATTTTTCTTAACA
ATCCACCAAGAGCTGTTGTTAGTGGCATAGGTCATATGGTTCATATTCCCTCTGAGCCGG
TATATAATGCATGGTATTTTTGCATTTTATATTAGTTACTTCCCATTGTTTGGCTATCTG
TCTCACACAATCACTTTTTGCTTGTACTCTAGGCTTGCAAAAAGCTTGGAAAGATTGAGC
TGTCGGATTGCGAAATGTACGCATCATGTGAACCTTGCCCAATGTGTTTTGGGGCTGTTC
ATCTATCCCGGATCAAGGTTCATCCTTTACCTTACCATTCCTCATCTGGTACAATATGTT
TATTTGATCCTTAATTAGCAATCTTGTTGAATACTTCAATACAGAGGCTGGTGTATGGAG
CCAAGGCAGAAGCTGCTATTGCCATTGGATTCGACGACTTCATTGCTGATGCTCTGAGAG
GAACTGGGTTCTACCAGAAGGCCAACATGGAGATTAAGCGAGCCGATGGGAATGGAGCCC
TGCTTGCTGAACAAGTCTTTGAGAACACCAAAGAGAAGTTTCGAATGTACTAATATGTAG
CAACGACATGGTAGAATTTTACATCATGAAAGACCTTGATGCTCAGAAATAATAATGTAA
TTGTCAACATTGTCATTGGCCATGGACTACAAACTATCGATTTGAATATACCATTTGATT
TATCATTATGCTCATCTCTCAGAAATAGGTATGCTACTGCTTGAGGAAGACTATTATTAC
CTTACTCTTTCGTTTGATCTTTCTTAATTCTGAGATATACTAATTTGGGTAAATTATTAG
TGATAATAAGACCTTCACCATTGCTCCATCTTTAAAAAGTTCAAATGTATGAATGCAACA
TTTCATAATTTACATTTACATGGCAGAAATCACCGAGTACAGTTTTTCTAACATTCACAT
GCTTTTTGTTTCAAAATTTACATAGAAAAAAATCATTAAATACAATTTTTGGAGCCTTCT
TAAATTTCCTTCTACATTTCAGTACACATTTTTTGTTTCATTATATTCATAGCAGAAATC
ACTTAATACATTCTTTTTAGCTTTCACATGCCTTTTGTTTTAAATTCTCATCCTACAGAA
ATCACTTAATACATTCTTTTTAGCTTTCACATGCTTTTTGTTTCAAATTCTCATCATACT
TTCCAGGTTTCCGACACTATGTTCCCTCCTGCATTTCATTTCATGCATAAAATCCATCTA
CTCAACATTTAATTGAGAACTTACTACATTCTTTTTAGCTTTCACATGCTTTTCGTTTTC
AAATTCTCATCATACTTTCCAGGTTTCCGACACTAAGTTCCCTCCTGCATTTCATTTCAT
GCATAAAATCCATCTACTCAACATGCAATTGAGAACTTACTCACAAAATTCGACACATCG
AAAAATGTACTGTTCTAAAATCTATGACTCAAAAGTGAAATACACATCTTGCTTCTGTTC
TCATGCTTCAACAAGGCTCTAACAACATACAGAGTACAAATCGAAGATGGCAGCAGAACA
AGCTCGGTTCAGAGCTATATACATGAAGGAAACTGCAATCTAAGCAAAACTGATGCAAAA
ATGAGATGTACATGACTAATAGGACGCATCCCATGATGCAAAGCCCCTTTGCAACAAATA
ACAAGCATCTATACCTACCTACATTACAGCGAGAACATATGCAGTAAAGAATTTAGTAAT
ATGTTGCCACTAGGCTTATTATGTATGGATGCCCGTGAACGGAAGGCTAAAGAACTGCCA
CCGTTGTAGCAGATTGGTGTCTCTTCACAATCTGTTTTGAGTTGCTCGCACGACTCTGGG
GTCACGGAGTTGGAATACCCTTGGATACGTGAACAATTCCATGGATATCTGGATCGTACG
CTGAGAGAGACATTGGAGATGCATATGCTACTGAAGTTGTCGCCCTCAATACCCTCCAAG
ATGCCAGCAACACCAACATCAATGCCAACGACGTTCTCAATTGTAATGTTGCTTATAATG
GGGAGAGCATTTCTGTCATACTTGCTATCGGGGTGTTCGCCGTAGTTTCCAGTGATCCTG
ATGGCCATCGAGACATTGTGCATGCTCACATCAGCTATATACACATTCCTTACATATCCT
CCGCGTCCTGGAGCAGTCTTGATTCTGATCCCATGCAACGAGTTCACAATGCGGAGGCCT
TCTGCCCGAACTTCAGATATGCCACCTGACATCTCACTTCCGATGGCAATTCCCGCACCG
CCACCTGTCTCCCCTGTGATGTTGCTGATGCTGATATTGGAGCTAGATTGTGCAAATGAA
ATTCCGTACTCATCCCAACCACTTTTAATGACAATAACATCGTCTCCGTTTCTAACATAA
CAGTGACTGATGCAAACATTTGTGGAGGAATCTGCATAGATATCGGGTTGCATTAGTACT
TCAGGTGAATATTACTGGGCAATTTTAAGCCTTTTGCGATTGCTTAATAAAGACAACCTC
AGAATTGTTTTGCATTGTACACCTAAATAACTAGCTTACAGTTGCATCTCAAGATCTGAA
AAATTAGCAGTTTCATCTTATAACTTGCATATTTAAATTATTTGCCATTTTTAGAACTAT
ATTTTCTCAAATGGTAAGGCAACATAACTTTGCCCAAAACAATAAATTATTTTGACATGG
TTAATTACAATCTTTACCAATTTACATATTTACGAGAATCTCAGCTATAAGTGGAAGTTA
AAGTTAACATCCAAACCACAATGGAAGGAAACTATCATTAAAAAGAGAGCATGTGCACGA
TATTGCAAGAACCAATGGTTTTCCTTTTGGTTTACCCAAAGGCACAATTTAAAATGGGAC
ATAAAAAGTATAACAATAAGAATAACAGGGATGGACCTGAAGTGGAAAAAGAAATCAAAA
TTTCATATTACCTGGATTAATGCCGTCGGTGTTTGGTGAGTCCAATGGTGCTAGGATTGT
GACGTGCTCAACAATAACCTGGCTGTTTATTTAGTAAAAAGTCCAGGTAAGAATTGTCAT
TTGTAGATAAATTGTGCTATTTTAAAAGGATGCAAGTGGCCATTTAGAAAACCAACCTGC
AATATACAGGATGGATATTCCAAAATGGAGAGTTCTTGAAAGTCAAATTGGATATAACAA
CACTGGTGGAGTACATCAACTCAACAAGATGCGGCCTGGTATAATTAAGTGTGTGGTTGT
GGAACCAATCCCACCAATAGGCCCCTTGACCATCAATTGTTCCATTAGCACCTGTCGAGA
GTACTAGATTAACACACTTGCAAAGTAACCAGTATAATAATAAAAAGGTTTGTGATGCAA
CCATAGACGCAAAGTAGTTACTAACCAGTAATTATTACATCTGTCAGATTCGACCCAAAA
ATTAGGCTTTGGTGTCTTCCTCCGGGGAGCTCTCTACCACGCCCATAGGAGGGAAGAGGG
TCTATAACAGGCCAATCGGACGAGTGCTGCAAATACAATATTTTCAATCAATGAAGTTGG
GATTTACCACTATTTGTTCAGTTACCTTTTAACTTCAAGAAAACATCATTTAGTAAAGCA
TATAAGAACATTACATATAGAGTTGCCTATGCATTACTCAGTAGTATTTTAATTTAGAGG
AAATCTTTGATCGACATGACAATACAAGATAGCATGTGCTGTGCGCCATGTCATAAACAT
ACAATTCAAAATAGTAATATGATGCAAGTGTGTGCATGTGCGCCATGTCATAAAGCATAC
AATTCAGAATAGTAATAAGATGCAAATTCTTATGTGCAAGAGCTGTGAGATATATTACCG
GAGATCCGATTATTACGGCGTCCTTGTCCAATGACAAAGTGAGATGGCTGATCAAATTAA
AACCTCCTGTCAGCCACCTTCCAGCAGGCACAAAGAGCTGCGCGCCGCCCTTGTCTGCAA
ACGAATTGAGGTAGAAGATGGCATTCTGGAATGCTTTGGTGTTGAGAGTCACGCCATCCC
CAACAGCGCCAAACTCGGTTATTGTGACGCTGTGAGGACGGTAGACAGTCGATGCCATGT
CCGCGCAGTACATGCCGGATACGCTGGACCATTGTGTCTCAACTATTGTCAGGAAAACCA
AAAGCGCCTGGAATGCCTGGCAGAAAAAATCAGAAAGAGTAATGTCAGGAGCCGTCGCAT
GTTCAGATATTTGAAATACCCCAAACAAAATGCTAACAGCAACATGGAACGTGTGAAATG
ATGTGTTGCAAGCAGGCTTAATTCTACTCCGTTAACAACGCCTCGCCGAGAACAAAATTA
TTCTTAATGTCTCAAAGAACTTTTTCTATCAGTACACCTAGGAGACCTCCAGCAAAGACA
AGCAGACTAATCTGATCTCAGTTTATGTCCCCTGTTCCCCACTAACTAATGGTCCCTGCA
ATCGCATGTATAAACCCAAAGGCATCATGAATTCCCAAATGCGCAATATCACTTCCGTCG
GATTCTATCGTGGGTGGATCGGCACCCACATGACAGGACGGGACAAGAGGAAAGGACACG
CCACAGCTCAGTCAGTTCGCATAATCTCTGCATCTGAATACCGACGGGCAAACACTGCCT
GCGCAAAGGACGGATCACGAGCCAGGGAGGAGCACACCACCGTTCGCTCGGCCACCGGAT
CACCGCCGCCGCCGCCAGCCTGCGGCCCGGCGAGGGAGGAGAAGGAAAAGGGGACGGATC
CCATCAGAGCCCCAAAATCAGGCGGCGTCCGGCCGGCCATGATCCATCTCGCCGTCTATG
CCGGCCACCCTAGAGGCAGACGAAGGAAGGAGTGGGAAGGGTCAGCGGGCACTTACGGGC
TTGGATCTTGCCATCTCGCCGCCGGAGACGGATCTCCGTCTTCCACCAGCGGCGCCCCGT
CTTAACTCGTTCCGGTCAAAGCGCCCCTTCAATGTGGCGGCGTGAAGCCGTGAACTGCAA
TCAGGAAAGCCCATCAAGAAAAAAAAATACACGGAGGGGAGGGAATATACACGGACACCC
AAGGAGGCACGGTTCGCTCACCCGCCGGAGATCAATCTCTCTTCCTCGCCTGCTCCCCTC
GGTCACGACTCAGGAGGGGGAGAAGAGCCAGTCAGCTCGACACTGGGTGGGTGAGTGAGG
GAGGGGGGAGTGATGCGAGGGGAACAGATGGGACAGTGCTAGCCCATGAGCCAATTATGC
TGCCGCGCCCGCCACGGTGGTGCGCGCCATAGGGTTCGGCGGGGCGGGGTCGAGGTCGCA
GGGGCGCGAGGCAGAGGACGACTAGAGGAAGCTTTATAGCCAAGCAGCAACAGCCGCCGC
CAGGAAACGGAACGGAGGGGGATGAGATGGATCGGGGGATGGTTGTGCCCTCCCCTCCCC
TATTCGACCCTAAATTCCAGGCAAGGTGATAGCCATTCGATGTCACTGCTTGCCAAATCT
CGTCTGATTTTTTCTTCTTCTCGTTCACCGCATCGGGTCAGGTTCTCTATATTTTCCTTT
ACCGTAAGTAGGAAAATGTGCAGCATTAGCGTGTCCGCAAGGATGATTTTTTTTATGTGT
CTATTTGTACGACGGTAAAAAATAATACTCCATCCGTTCCTAAATATAAGTCTTTAAAAA
AGTTTCATTAATAAACTACATACGGATGTATATAGACATATTTTAATATAGATTCACTTA
TTTTGCTTCG