morexGenes - Barley RNA-seq Database

Contig contig_1565115

Source Contig contig_1565115

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1565115 (4333 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1565115

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13209	2	1782 bp	MLOC_13209.1	Available	Available	LOC_Os01g65310.1, FRAME:+2, EVALUE:0.0, 13101.m07052 protein DUF803 domain containing, putative, expressed
MLOC_13210	1	956 bp	None	Available	Available	LOC_Os01g65320.1, FRAME:-2, EVALUE:2e-27, 13101.m07053 protein expressed protein

CDS Structure of MLOC_13209

CDS Structure of MLOC_13210

Contig Sequence (4333 bp)

>contig_1565115 4333 assembly3_WGSMorex_rbca.fasta
CCTCGCCGTAGCTAAGACTCTGCTCATCCTTTCGTACTCTACACATCTACTGTCAGGCTT
ATACTCACGACATACACCTTATATAGAAAAGCGGAGGGGGTATATATCAGTATAGATCGC
AAGTTGTGTTTTACATAACAATACATATTTCTTGAAATACTCTGTGCTCTTGCTTTCAGC
TGCACCATGTTAGAACGTGCCTTGACACGTACTGCGTGATTGCTTGTATTGTAAACACAA
TAAAATAGAAACACAAGCTTGACTCACGCCCTCGCGGGGGAGAATTTTCACTTGGCCGCC
AAGTCCCAAAGCACAAGTGGAGCACGAAACTTTGATGTGGCGGGCCGATGTGCCCGAAGC
AATGTCAAAAGGAAAACGGGTGCCATTTAAGTTCGAAAAATTCTCCACCCTCCCTTCTCT
CTCTCCCCCCTCCGTCGTTCGATTTCCCGACGCCATCGTGCGCATCGCCGGCCAGGACAA
GGCAAAGACATACATACCCAGAGGCAGAGGCTACAGCAGCCCCTCGCAGGGAAAAGAAGA
CCCACCCAGAGGCAGAGGCCCGCCTCAAATGCGCCGCCGGCCGCGCGCCGCCGCACGATG
AGCCCCGCCGCGACGGACGCCGGCGGCGACCTCTTCGCCGCCAACCTCAAGGGCGCGCTC
CTCGCCGTCGCCTCCTCCGCCTTCGTCGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTC
CGCCGCGCCGGCGCCGTCGGCTCCCGGGCAGGTCCGTCCGTCCGCGCCGCTGTCGCTTTC
GTGCCCTTCGATGCGGCTCTAGGTCTTTCTGGTTCATGAGAAAGGGCGGATCTTTTGCGC
CCGGTTCCGCGTATCTGGTGACGTGACCTTCGCTGTGCTGTGAAAATTACAGGCGTCGGA
GGGTATGGGTACCTCTGGGAGCCGCTCTGGTGGGTCGGGATGGTCACCAGTAAGCCTCTC
CTCATCCTCATCCTCATGGCCTTCATCTGTTCCTTACTCATGCGAGAATTGGATCCAGAT
ATCTCATTGCAACGGCAACTTTTCAGTGCTTGTTGGGGAGACCGCCAATTTCGTGGCTTA
CATGTTTGCGCCAGCCGTCCTCGTCGCGCCGCTCGGCGCACTCAGCATCATTGTCAGGTA
AAATTGCTTGCCCTCGTCCTCGTTTCAGATCGCCTGTGTAAGATTTCGAATTCAATTGTT
CGGGTTAGTTTGACATGTGCATGTGTGTGCCTCTTTGATGTTTTTTTTGGGGGGGGACAG
TGCTGTTCTAGCCCATTTCATGCTGAATGAGAAGTTGCAGCGGGTGGGCGTCCTGGGCTG
TATTCTCTGCATTGTTGGGTCGACGGTGATCATCCTCCACGCTCCGGAGGAGAGGCCCCC
GAACTCGGTGGAGCAGATTTGGCGCTTGGCAACACAACCTAGTAAGCTCCCATGCTATCT
CCATCTGGCTACTTGCTATAAAAATGGACTTGTCTTTTGACATGTCATCTGTAATGTTGT
TGCAGCCTTCCTTTGCTATGCTGCTTTAGCAGTAGCTGTGTCATTGCTTCTTATGCTATA
TTGTGCTCCACGGTATGGGCAGGCGAACATAATGATCTATGTTGGTATCTGCTCGGTTAT
CGGATCCCTCACGGTAAATGCTCTGCATGATTGTGCCTCTGATTTTTCCATAGGTATTTT
GTTATATGAGTATTGATATCTGTTTGATGCCGTGTCTTGTTAGGTAATGAGCATCAAGGC
TGTGGGCATTGCAATTAAACTTACCATTCAGGGCGAAAACCAGGCTGGGTATTTCCAGAC
GTGGTTATTTGTGATGGTTTCAGCTATATGCTTAGTCATCCAGTTAGTTTACCTAAACAA
GGTACTTCAGTGCCTCATCTTTATATGTAAAAAAAAGGGAACTTGTGGTCCTTCCAGATT
TTGCAACAATATATTCTTAAAAAAAACACTTCTGTTAATTTTGCTTGAAGCTCTGTTAGA
TAATGTGTGGCAGGCTCTGCGCAATCACATCCTAATATTCTGACCACTACTTCATCTGTT
GTGTCAACCTTCAGGCACTGGATACTTTCAACACAGCGCTGGTTTCTCCCATCTATTATG
CCATGTTCACAACCCTCACTATTTTAGCAAGTGCCATAATGTTCAAGGTGAGCAATTTTG
AAAATATAGGTACTCTTGGCCCTGTGTTCATTGGTTATCTCACTTGTGTATTCCTGACTA
TCCAGGATTGGTCTGGGCAGAGCGCAAGCATTATTGCCTCCGAGACTTGTGGGTTTCTCA
CAGTTCTTGCCGGTATTATTGTGCTCCATTCCACTAGAGAACCTGATCAAAATCTGTCTC
CAGGTACATACTCGCGAAGCCTGGTACGTACAATGTTAGGAGAGAAATCTTACTCCAACG
TACTGATCATTATCCTCTCCATATGACTGCAGACCTTTATGCATCTCTCACTGCACCCCT
GCCTCCAAAGATATACTGGCACATACAAGGAAACGGCGGCGATGTAGGGAAGCAAAAAGA
GGAAGACTCACTTCCCTGCGATTTCATCACCGTCGTGCGCCAAGACTACTTCGTCTAGAA
AACTCTCAGGACGGCATACACGTTTCATGTGCCGGCCAGCCTCAAGACCTTCATGTGGAG
AGGGTGGACACCGGGGCCAGTTACCGACGGTAATGACGCCCTCAAGGCCATCCTGGCCTG
AAAAATGTTAAAATTTTGCAGAGAGATCGTGTTGTACCATACCATGACCAAACCGGTTGG
GTCGAACCTAGATGAGATGTTGTACGATTACTTGTGGACTGTAGAAACTGTGCCGTGTAA
GGATGATGTTGTAGGGGGTTCGTGAGGGATGTTGTAGATGTTGTTGCCTGTCTGATGTGA
ATACCAAGCACACAGCGCTTGCTGTTGCTAGTGTGACATTTTGTTTCGCCCTTTGTCGGC
TTGCATTGCACAGTCCGTTGGCAATTCCACCTTGGTGGTCATCCTGTTTCGCGCCTGGGT
TGAAAAGGTTCTCTGCTGGGTCATACCGGTGTACCTTCCAGGTGTACAATAAAGAGATAA
TAACGCAGCATTGTGTTGAATAAGTTGAGTTTTTTTAGTGTTGTGCAGAGTATTCACGAA
CAGGAGGTGATGCATGAAGTTCAGCTCGTTACCAGGAAGCAGGATGGAACAGACATTCTG
CTGTTTTTTTCCCCTCCTGTTACGGGCATTGTGCGGCCGTTGGGACCTGGGAGTACGTAT
GAACTGGCGCGCAATCTCGTATGTGGACCGACAACCAGCCTTCTTACTCTTGCTGCAACA
CGATGGATGCTTTTCTAGGACAGCGGACTCGTTCAGACTCGTCCGCGACCGGTCCCCTCT
AAAAGCAAATTAACCATATCTGCAACTCAGTATTTGCTTCATGATCTATAAGTTATTAAG
TTTACAGTTTCATTACACTGCTATATTCACTCGCTAGCGGTACCAGTTCACACAGCATTA
CGACGTATAGCTCCGTAAACAAGTACTCCTACGTACTACACGAGACGACATGATCGTCAC
AATAGTCACAAACTTCAAAGCAACAACATATCATACACGTACAGTAGCCATACTGTGACC
GGAGGTTCTGCTCAGACCCAGAGCTTGTGCAGCGCGTGCAGCTGGCCCAGAGAGGAAGAT
TTCAGAGACAGACGGTACATCTCTTTCAGCTTGGCCGCCTCTCCCCTGCCGCCGCCGACG
CCGTTGGCCTGACTAGTTACGGAGGCTGCTGGCCTGCTTGTGTCCGGGTTCTTCAGCATG
CTCTTCAGCAGGCTCTGCAGCTGGCTCCAGAACTTCGGCTTTATGTCCAGGTTCACATCG
TCCGAATATTCCTCGTTTGCTCCGACCACGTGGCGGCCTTCCAGCAAGTGCATCAGCGCG
CCTTCAAGCATCTTCAAACAGATACGAAGAAACATGATTATGAGATCATAGAAGAAATCC
CGTTCCACATTCACAAATAAGACATCCTAGGCACGCGCGCGCGCACACACACACACAGAG
GATGTCAATACTAATGTGTAAGCGAAAGCATAGCCTCAAGCCTAAATGCTCAACCGGTTT
CAACCTGCTGTCTACAGATGCGCCTTTTTTCTTTCTCAAAATATCCCTAAGTAGAACTCC
CGCTGCTTAGCAGTAAATAGCAGTAAAAAAAAAAAACACTACTCCGCAAAATTACTCTTA
ACACTACAAACCAAATGCAAAAGGCAACATACTAAACGGTTCTAATTAGGGATGGCACCT
GCAGGGTATGGGTACGGGTAGAGCCTCCCCATACCCTTACCCGTCCCGTCTGAGATTACC
CATCACCCTTACC