Contig Data
morexGenes
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Map Locations of contig_1565075 (6457 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1565075

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13188 2 1962 bp MLOC_13188.2 Available Available LOC_Os03g02480.1, FRAME:-2, EVALUE:2e-97, 13103.m00210 protein inner membrane protein, putative, expressed





CDS Structure of MLOC_13188






Contig Sequence (6457 bp)

>contig_1565075 6457 assembly3_WGSMorex_rbca.fasta
CGCGTCGTTTTTTTCTTCCGCCGGCGTTCCTGGACGCCTCCCAGCACGCTGGGTTCGGGC
TGGGACCGACGGGGCCAATTTCGACCCTAACCGGCAAAAAACTGATTCCTCGGGACACGA
CTGAGCCGTTTTTTCTTCGCCAACGAAAAAAATAATCTGAAAAAAGGCCTGTTGGGGGCC
CGGCTGGACATGCTTTAAGGCGGAGCTGAGAGGATGAATATGCTTGTTCCCGAGATTTAG
GCCTTGGTTGTTGTCTTGATAAACGGAATTAACGCCTAGTTTTAACAAAACACGTTCTAT
TAGGATTTTTTTTCTTTCAAAAACTAGTTTTACTAATAAGTTGGTAAGGAATAAGCATGC
GCAAAAACCTGGTTAAATGGTGAAACATGTTTAAGCACGATGGACGAACATCCGCGTAAG
AGATGATCGTGTCCAGCATGGATGCCGCGGTTTTTTTTTAAGAGAACAACCTCCGGCCTC
TACATCTGGACGATGCATGTAGTCACTTTATTAATAATACATAAAATACCTTATAAAATA
ATACAACAGTAAGACTGAAGCCATCATCCACGCAACATTTGTCGATACTTCTATTCAGTT
GATGAAGGGATGTTGATAGTCTAGGCCTAATACCAAACAGACCTCACAGTCAAACCTAAC
ATCTAGGATGTGAGGCCCCAACCAAGCCACATGTTGGATATGGGGCACCCACCGGTCCCG
CGCACACCCAGAGGCCGTCGTCGCCACCTGCCACCAATCCATCTTCAGAGCTGTACTGAT
GCATCTACCTTGCCGAGTCTAGTTGTCGTAGACGCCACCACGACGCCAGACGGCGTCGCC
CTCCTGCGCGTGTCCGTCATCGCACATCAGGCGCCTAATCTCCAGGGCGCCATGCCATCA
AGATCCATCGTCATCAATGTGTATGATGAAGCACCGCTCCACCAAAGATGTCATCCACTG
GTCTCTCGACCCCGTATAAATCTCCAAGAATGACGCCCCCAAGGGGGGAAATGACGCAAG
CGCGCTGCCTTCTTCTGATCTCTCGATCTAGGGTTTCCTCCGAAGGTAGCAGATAGTGGT
CTAGACCTTCTCCACGACGATGCCTTCAAAAAGGGAACGACACCATAGAGTGCCGCCATC
GTCGGCCTTGGCATCTAACCAAGAGCAGGTTTTCATCCAGACATGTTCAAAGAACTCCAT
CCAACTTTTTATCCACGGATCACCGTCTTTTTTGTCAGAGACTAGATCAACAGGATCCAG
CCGCCGCTGCCTGACCAGCCGCGGCACCACCACGATGCCAAAGCAGCCAACTTTGGCAGG
CCCACCACGCCAGCATGCCGTCGCATACTAGACCCGTCGGCCCACCAAAGTCCATCTAGG
CCCGATGAGATCCGAGATTCCGGTCGCCGCCACAAAGGCGTCTCCCCTGCGGGAAGGCTG
CGCCACCATTGTCGTCGCCGCCATGCACGCCGCCGGCATCCCGCAACACCGCGCCACCGG
GTCACCGAAGTCCATGCCGTCGTCGCCATGGGAGGACGCCACCGCATGCGAGGGAAGAAG
ACCCCGCCGCTGCCATCACAGCGCCCGAGCTTCGCCGACGTGAACTCTGGTGGCGGCGGG
AGGGACAGATCGGAGCGAGGTGCTGAGGGCCGGCAGCGCGGTTCCCCCTTGTCGCCTAGA
GTGGGCGACCTCATGGGTGCCGCGGTAGGCCGTCTCAATGCTCATGAAGGTGAATCTTAG
CAGAAGAAATAACACTCGTGCGAATGACGAATCATTTAAGAACAAGAATTAGCATACAAG
GAATCTGCTGCGGCTGCACAACTCAAGATCAAAATTGTTGAGAGTTGAGACAAGCATCTA
GGACGTGGAACCAAGCCCTGAAGACGTTGGTGATGTAGTGCCGACCTGCTCGGACCAGTG
ATCGACTGCGCGACGGGATGAGTACTCGCCGGAGAGGGGTCAGTGGTCAACAGTGATCAC
GACGGCCCGACAATGGTAACGGCCATGAGCACCGCAAGATGACTGGTAGCTGAGAAGGAG
CAGGGCCGGGCCTATGTTTTGAAAGACCCTAGGGCAAAGTCCATGACTTGTCGCTCAGAA
GGAGCAGGGCCATGCTATTCGTCATCCGGAGTGAGAAATAGTTATTCCTCAACCTTTTTT
ATTTTAACATCAATGCATTGTAATTTTATATTTCATAAATTTTATCTTATTTCATAAAAA
AAAGACAAAAAAAATATATAATTATCATAAAAGTATTTTATGTTACGTAAAATTACAAAC
ATCACCACTTTATCACCCAATAATGGAACAGGAATCAACAGTCCCAACATATGTTTTCGG
CCGCCACGTTTTATCTTGATCGCAAACTAAAAGTTAATACTATTACATAATTCGATTTTC
AAATGTCAAGTGGTACAATAATAATAACCACCCTCTGGTTTCTTCTCAGCCAGCATCACT
AAGCTTAATCCAACAAACATTCTGGCGATTTTAACTGCCAGGATACCTACGGTTTATTCG
CCCGAAACAGCATTTGCAACACATGCTCACAAAATTGGCTAGTCCAAGTCAAATCTTGGT
ACTATATCGATTTGCCCGCGCAAGATATCCCTTTATGGCCACCAGACGCGGGTTACAAAC
GCAATACCTAGTGCTTCTTTGGATTTCGCGTGCTCGGTCAGAAACTTACTTGTTAGTTTA
TTCCTCCTGAGATTCACCTCTAGCTTTAGCCCGCCTCTCAAGTTCTGCAATCTTCTTCTC
AAGAAACACAACCCGGTCGCTTAGCTCAGCATTAGACTGCTCTGACCCGTTGACTGCGGT
GGTTGAATCACTGTTGACTACGGTGGATGAATCACCGTTGTCCCCGGTGGGTGTATTGAC
TGCTGACACTGGCTTTGGTGCCTTGAAAAGGTTGAAGGTCGACACTTCCGCAGGTGCGGG
CTGTGGTACTATCTCAGGAAGATTCAAGAAATACCTCACGGCTGTCTTCCGGAGAGCTGA
GAGAAAAATTGAAAGGAACATATAAGCATTAGAAATTAGGAAAGGAGAAAAACAGAAGAC
ATGGACGTGTGCAAGATTTCAAGTCTGGCGAAGGACTTACCAAAACCATACCCAAGAGAA
AACAAGTTTGCGGTCACCCAGTAACAGAAAATTGCCTGCAGAAGCAAAAGGAATATTAAT
GGCAATGCAGAAAAAAAGAAGATTTTTGGTATTAGGGTAAACAGGGCGATGTTGATGCTG
CAAACAGAGAAACTTAGCTACGTTAAGATGGAACAAAAGTAGATCGCTATTAGGATAAGC
ATGAAACCATATTTATTTTTGGTATTGACACGACATATTTCTTACTACCTCCGTCCAGAA
TTAGTTGTCACTCAAATGGATGCATATACTAAAATAATACGTCTAGATACATCCGTTTGA
GCGACAACTAATTCCGGGCGGAGGACGATTTGTAGAGTGTGGATGACAGCTCTAGCTTAT
TTTCTTAAAAACAGGATTTACACACATCTCAATCAATCAGTGTACTAATCATCTTGAATA
GTTAGGTGGAAAAACAGGTCCTACTTTAGGGAACACAAATTGCTGTATCTGAAACACTAC
AAACACCTAAATGGCAGCTCCAACTGAACCATGCGAAACACTACAAGGGAACGGAGGGAG
TAAATTTCTGCTCTAGCTCACCCACAAAGAAATCAAGGGAGTGACCCATACATGTGTTAT
GACCAACTCCAAACCACACCATGAAAGTTTGACAATGGTGCAAACAAGGCTTTAACACAC
ACAAAAAATTGTCCTACATTTCAGGTAATATGAAGCCCGTGTATGGATGAATAAGGCAAC
TAGGGAAGACTGACTGTGGTTGTGGTTACAGTGAAATAGTTATTGAATGGACTTTCCATA
TGGGGCAGATTTTGCCTAGTTTCAGAAGCTAATCTGAGGTAGTATGCGATTGTCTGCCAA
CAAGCCCAGATTTAGTAATTCATTACGGGAGGCACTTATGCATGCCAACTAACCTGCATT
CCCCGTATGTTCAAATTCCTTACAGATAATTTGTAGCTAGAATTTTATGGCTATGATTCA
TGAAATTAATATTCTTGAGTATTTCATACCTTGGGAAAGTGCATTGTAAATGGTATAGTC
ATAAGAGCCAATATTCTAGAGAACTTCTTCATTGTTTGCAGCATAGGATTTCCCTCCATG
CCTTCTTGCATGTTGAGCTGGAAAAAAAAATCATTTTCTTAACTATACAATAACATATAA
GACATATTTATTGCATCAGCCTGGGTACACACCTCCACCGTAGCCAAGAATGTCGCCGAT
GTCAACACTGGGAGGATATAAAGTTCGTCAGGAGTTGTCAAATCAGTAAACCAATATGCT
CCACCTCCTTTCAAAGAAGGGACTTTCTCCACCATGTTTTGTATCTGCAGTTGAGACAAA
CACAAGGTGGAAGATAAACATACTGCAAAATGGCTGTATCATAACTAGGAGTTGTTGTAG
TAAGAAAATTCGACATTACAAGGAAGTGGTATAAACTTACAGCAAAGAAAAAGCTCATGA
ATATAGGCCCTTGGATGAATAGACCCTTCAAGGGTGTCAATGGATTAACACCGCGCCTGA
CGGGAGACATTCAATAATTAAAATAACAAAACTATACGCTGTATGACTAAAAGAAATAAA
AAAAGAATAAACAGAATAATATAGGTTAAAGCGGTAAAGTCGAATTCTGTAAAAAGTGTA
AGGCATGGTTTGAGCAAAAAAGAGACACTCTGAGCACGGATGATAGCAAGAACAATCTAA
TGGCCAATACACCATTTTATAACCTACAAGCTTCTACAGAGCCCAAGTTTGAAGAACCAC
AGACATGAACATAAAATGATTAGTTGGCAAAACTGCACCAACACATAAGATTTTTAAAAA
CAGCAGGCGGAAAATACAACTTCCAGAGCACAAAATATTCGTAGGAAAATAACTAAATAA
GTAAACCATCGGATGCTGCATACTTCGTGAATAGCTCGCCCAATTTCTTCTTCCCCTCTA
ACATTGATTGTGGATCCATTGACTGCAGCAAATAAATATAAAAGATCATATCATTAGGAG
TGTAGAATGTACAATTTTTTGAACTGAAATAGATTTTAGGTTCCCTAGGGGTGCAATTTG
TCTTGGACAAAATTATAATTTAGGTTCCTGCAAATATCACAAATAAGTGAAAAACAGAAA
AGTATGGTTTGTTAATTGGGTGGCAATAAATAAACACACAATGGCATTAAAAAAAACGGC
TACGTGTGTAGAACTGCACGGAAAAAAACTAGTAGAAGTATGTCTGCAGGATGTTGTTGT
CAATCCAATTACTGTGTCTACAAATAACATGCTTACTGTAAGTTACCGTATAAAATGCAA
CTTGAACTTAAGAAAAAAGATCTACTTACATTTTGCATCTCCATGTTGATTGCCTCAATT
TCTGGTCTTATTGCCTGCATAGAGTAAGAATTCATAAGAAATAAATTAAAAAATTCAGCT
AGTTACCTTGCAGACACTCAAAAGGACACAACAGATATAATGTGAATAGATTTAAATGAG
CAAAGAACATAACAAAAACATCATAAAACTCAGGCCTCTCAGAGACTTTGAGTGGTGTAG
AATAATCCCACATAACTTAGTGGAGGCATCAAATTTCATCTGTGTGGTATGATGTTTGTT
TCGATGTGCTCAACTACAGGCCTTTCAGCCATAGTGTGGCAATCAGAAGTGATGATCAGG
ATCAAAGTAGTTGGACACATTAACCAAAAAATAATCATTCTACTTGACATAACAAGGAAG
GGGAGACTGAGCGTTTGTCCAATGCACATGGCAATACAATTTATGAATCAAATGCTGCCA
AAAATGATTTTGACCCAAAGAATAGTCCCAATATTGCTAGTTAAGGCCAAATGTATTGGA
GGCCACCCAACCAAATTGAGACACTTGCATATTGGAGGCCAAGATATTTTAGGCCACCCA
ATCAGATGACAACTTGATAGAAGTTTACTTGTTAGCGCAAAGAAACATATTTGGCACATG
CAGCCATCAAATTGTTTCATCCCCACTCTACCTTGCATTATTATCTATTCATTAATATAT
CAGAAAGCTTGAAATTTGAGACATATAAAACATAATAGTACATGTGAAATACACGAGACT
GTGTTCACTATAAGTTGCACAGGATTGACAGCATTCACCGTTATCAAAGCTCGAACTTGG
TAAGCTTCTACAAAAGTTTGTCATAGGGCAAATTTTAACATGCTCCCTCTTACCCCTCTT
TCTACATATGAGGTAAGAAGGTAATACTTAATCAAACCGCTAATTAATGAGAGAAACGGC
TCAGATCTATTATCTACTCTTACCTCTCATGTAAAAATAGGGGGTAAGAAGGAGCATGCT
AAGGCCCTGTTTGGTTCCAAATAAGTCACCAACTTAT