morexGenes - Barley RNA-seq Database

Contig contig_1564867
Source Contig contig_1564867
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564867 (7434 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1564867

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13124	4	3050 bp	MLOC_13124.4	Available	Available	LOC_Os03g04600.1, FRAME:+3, EVALUE:3e-173, 13103.m00476 protein expressed protein
MLOC_13125	1	2819 bp	MLOC_13125.1	Available	Available	LOC_Os08g07290.2, FRAME:-2, EVALUE:0.0, 13108.m00747 protein HEAT repeat family protein, putative, expressed
CDS Structure of MLOC_13124

CDS Structure of MLOC_13125

Contig Sequence (7434 bp)

>contig_1564867 7434 assembly3_WGSMorex_rbca.fasta
CCCCCGCCGCAGCCGCAGCCGCAGAAAGCCCGCAAGAAAGCTCTCGAGCTCGCAATCAAA
CCTTCCTTTTCGCCCAGCCTTCCTTCCACACTCCTCTCTCCGCAGGCAGCGGTAATAACT
CCCTTCCTCGCCGTCCTTCCTTAAAACCGGAGGGGAGTTACGTTACGCCGCCGCCGCCAT
TAAGCCCCTGCTCCGGCAACCGTTTCAAACCCTCTCGCCTCCGGTCACAATCCTTACCCC
CCCTCCGCCACCAATCGTCAAGCACCCAAGAAGAAAGTTGACAGGGAAGGACTGGAGGAG
TAAGAGGCGACAGCCCGCTCCCTGACGCCTCCTCCTCTGCCCACATCCGTTCGGGAAACC
TTTACCTTACCAGCGATCGCTCTTGCTCTTGCTCATTCAGGTCCCGTCCCCATCCATCCA
TCCACCGTCGTCGTGGTCTTCCATCTCGATTTCTCTTTCGTGGTCCGGTGAAAAGCTGCT
TCCGCTTGTCCCTTCCTCCACAGGGTAGCAAGCAAGCGGAGCTGCTTGCGCCTTGTCCTC
GATTCTTTCTCTAATTCTTGGTCCCTCTCATCTGATGCTGGATGGCTCCGGATTAGGCCC
CGGGTCCTCCCTCCTCACCTAATCTTGTTTCTACTCACGGTTGGTAGTGCTACTGCCCGC
TTGCCTTGCCGGTCCAAGCAATCAATCGATCTACCCTCCCTCCCTAGTCTCTACCTACAT
AGCCAGCCTCCACGCACCACTCGGACCTCTCCAGAGTCGCCTCCAAGACTTCACACCAGC
CCATCGACATCACCGCTCCTTCCCTAGAGCCTTCTTCCTCCTCCGTCTGCTGGTTGCTGG
GAGGTTAGGGGGCAGTGCTTGCTTCAGGGGAGGGAGGCTTCGGATGCTGCGCGGTGATCG
TTCCCTGAGGTGAGCAATTCTCGCCTCAATTTCTGATGAATGTTGCTACATAAATGGTTA
TCTGCATCTCCGGTAAAAATTTCTCGTCTTTTCACTTTTCATATACACTACGAAAATGAG
CATGTGCTCTCTTCTTCTCCTCCTTCATCTCCCAAAACACAGAAACTTTTTACTTTCGAT
CAAATGAAAAATAGAGGAACTTTGGCCATTGCTGTAAAGAAGTCAAGTCATTGGGCTTGC
GTGAGAAAAAGATAGCAGCAGCAGCAGCCAGCAGCGCCAACTTTCTAGCCTCCTTTGTGT
TATTGCGCATGGGCTTCTTCATCTTCATCCCTCCCTCCTTTAACCGCCGTGTCAAAAGGC
AGGCGCAACAAAGCGATGATGCTACTCTTTAAGCCGCCGGTGATGGATGCAATTAAGTCC
TTCCTTTTCTCGGTTGGCCATTATTCCCTGCTAGTGCTTGCTTTTCTACAGGCTGCTGCT
GCTTTAGTTTTCATGCCTAAGTAATCAATCAATTCTCCTTCTATCCAGTTGACTCCTATT
ACAATTGCAGAGGAGGATAAGAACTTGCTCCCTGATCATACTGTTCTTGCTTGCACATCA
ATCTCTGCTTCAAGTGCTGCATTTACTTTCCTGTAACAGTCTTGCACGTTGCACCCAATG
CTTCAGTGGCAGTGCATCCTAAGCAATGGAGTCCACTTGGTAGCGGTACAGTTTTAGTAC
TAGCATGTTCTCTTGCTTCTACACGGAAGGAATGAAGGACTTCAGAATTCAGATAGTGCT
ATTAATTCTTTTCATGGGTAGGGTGTACGCGACGATCTTACGGAGAGGAAGCATTAAATT
TTTCGCCAAATTGGTGCCGCTGAATTGGTACCTGTGGGGAATTTATTTTTCATGTTCTCT
GAGTTGGTTCATAATGATTTCTGGGCAGTTTGTGTGTAAGCACTTGTGCAGCACCACAGG
TGCAGGTTTCTTCACTAACCTTATTAGGCATAAGATGAATGTTTCATAGGAAATGGCCAA
CACATGGTCCTCTCTCTCTTCTTCTTCTTTCGTGATAACTCACATGGACCTCTCCTGGCA
ACCGTTGTCCATTCGTATTGTTTGTAAGGCTTCGATTGATTGGTTAATTATAAAATGTTA
TGAATGTTTGCTCCATGATCTACGCGCAACATATTCTTAGATTCTCGATACAGTTGTTTG
TTTAGGGGTGGATTTATTTGCTTACTATTTAGGGAAAGTCATTGCTCTGTTTTCAATATT
TTCTGATCCGGCGCCGATACACGGAAACTGAAACTGCTTGACTGTCATCTTATCGATATT
TCCCGATCCGGCTACGATATATCGGAAACTGCTTAGCTGTCATAATAGACAACATAGGCA
TGATTTTGGCAGTTCTTAATTTCCTGTCTGTCGATCAGATTTGGGTTTTCTGTCATCTTT
TAACATGCCAGTGATGTTACTGTTGTGCAGGTAATCAAGGCCAGATTTTCCAGCATTCAC
TAGATTTTTGCTTCTTCGGTGAGGATGGAGCTCCTCTATTTGGAAAGGAGAAATGGATTA
CGCGGCGACAGCGCCGCTCCTGAGTTCAGTGGAAGATCAGAAGAGGAACATCATCAACAC
CTGCCAGCTGTTGCACCTGAGGTTGAGCCTGATCTGGTGCTGGTAAACTACAGGCAGGCA
TTTCCATTAGATGAGAGGAAGAGCAGGAGCTGCCAGTCATGCCACAGGTCACCGTGCTCT
TGCGGTGGCGACGCGCCTGGCCCGGACTCGTGCCCGACGCTTCCTGCCAAGATGATGATC
TTGGAGTTCCTGATAAGAAGCCTGAGGCACCCAACAAGAACCCACAACGTGAGTGATCTC
GATGACCTGATCAGCGGCGGAGCCAGCGCCGGGGATGTCACCCTGGCTCCTTCGGACAAG
ATGATGCTGGACTCCTTACACGCACTGGTGAACGCCAAGACAAGGCCGTCTACGAGCCCC
TCGTTCTTCCTCCCGGGGGCCAAGATGAGGAAAACCCGGTCAAGATCCCACACCATAACA
CAGTCAGAGATACTGAAGCTGATATCCCCGGAGACATGGGAGATGTCCTCCCCCGGGGCA
TCGTCGCCGTCGAAGAGAAGCACGGCGGAGCTTGCCGCCGCGGCGCCTTCTTGCTCAGGC
ACGGCATGTCTGAGGTCAAGTCAGCCTTGTCTGTCCTCACACCCAGCACCATCATCATCT
CTTAGTGCGGGCCTTCTGCAGTGTGTTTGGAAAGATGGGCTCCCTCACTTCGAACTGTCA
CTGGACAACCCTATGGCGATGTACACCGCAAGCCCTGTCAGGCCAGCCGCCGCCGTCGAT
TACGTCTACATGTTCCATTCCGACGAGCAAGGGAAGAAGGACTGGATGGGGAACTACTCG
AGCGGCGTGTCGAAGCTCGTCGGCAAGATGAAGGTGTCAAGCTCCCTGGTCCTGGGCTCA
GGCGGGACAGGCTGTGTGGAGACTGAGTTCGTCATGTATGGCTCCCCTGATGACTACCTG
AGGCAGATGCAGAGCACCTTCAGCGTTGCAAAGGGCAAGGGGCTGGTGAAGAGGGTGGCA
GAGATCATGAGGTCGCCCAATGCTTATTCCTCTAGCCCGAAGCACGCTGCATGGGGGAGG
CTTGGCAGACCTTCTTCCCCGCTGCCGTTCGACGACGACGTGCGCGAGACGCTCGACGGC
GAACTGGGCGGTGCTGGAAAGGCGACAGGGTTGGCGAGCCTCGCCGCCGACGATCTGCCG
ACCAACCAGGAGGTGGCGGCGATCGTGGTGAGGGAACGGCGGGAGGAGCCTGCCGTCGTC
GGCGGCTGGGGGCTCAAGTTCCTTGAGAAGGCCGGAGGAGCCGCTCATGCAGAGAGCAGG
AGTAAGAATGCAAGGTGGTGCATAAGCGCCATTGTGCCAAGAGGATACCACGGCGGCGTG
GCTGCCGAGAAGGGCGGCCCGTCGGGGCTCGTCGAGCGATGGCGGTCCGGCGGCCGCTGC
GAGTGCGGCGGGTGGGACCTCGGCTGCCCTATCAGAGTGCTGAGCAACGACGGCGGCGGG
TCGTCGTCGCCGTCGCCGCGGGACGGCGGCAAATCGGTGGAGCTGGCACTGACAGTAAGC
ACAATTCAGACAGACAGAAATTTATATTTCGGAACTGGCATATTGTCTTTGTTCATGCCC
TGTCCCTATCAAATTTCAGGGCGGCGGCGACGAGCCGGCGGTGAGGCTTGTGAGCGTCGC
GGAGGGCCTCTACATCCTCTACTTCGACGCCGGCGTGGTCTCCCCGCTGCAGTGCTTCGC
CGCCGGCGTAGCGGTGGTCCACAGCCAGGCGCCGCAGCTTCACCCAAAACTGTGAACCGT
CTGTAATTGAGCGGTGAACAAATTGACCCTCTTGTAAGATTGTTTTTACTCTTTTCACTG
ACAGAGATGGCAGGCAAAAGTGTGCTAGAGCTCGAGCTGTTAATTCATCAGCTTTTCTGG
ATGAATGCTGAAAACTGTAGTAGGAATCACAGCTCATGTAAAAAATGCTGCTGTATAAAG
TGCACAAAGGTATTTACAGATTGTTTAACTTCATTGCCTAAGCTAAGAATTCAATGGGCC
ATTGTGCTGATTTTCGGCTGTAGTTTTCACCGCGATGAAATTCACATTAGCCGCTCAAGC
TGCTGTTTATTTACCAGCTACTCAAAACTGAAATTATGTATTCCTGATGCAGAACATACG
GCGACTTTTCTTTATAACAATCATAGCACAACAGTTTCACCCCCAACAAAACAAAATTGT
GGTGGCTGCAAAACTTAGCTGTAGAAAGAAACACAGCTCACAAATACTTCTCATCACATG
TACCCAAAAGCAATTTGCAAATTGGTTCTAAAGAACAAAGTGACCGCTATCTCACCCCAA
AGGAGCTACTTAATTGTTGTACATGAAAAAGAAAAATAATCATCTGAGGAGAAAATAGGG
ATCAAAACTTTCCAAGGCGGCGGAGCCTCCCGCCTGGTCCTCCTCCGGCTTGTGCGACCG
CTTCACCAGCAGATAGAGGTTGGAGAGCAAAGGGTTCTTGAGGAACGGGGCGATGAACCC
CTCCAGCTCTGAGAATTCTTGCAGATACGATTTGTGCCTGTCCTCCAGTTCCTCTTGTTC
TGATAACCACCTTGATTCAGTCAGCGCGTACAGGCCAAGCAGATTTGCGTATACTGACGA
GAACACATCCTTGTGGTTGCCGATGCCGCCAATCCAATCGGTTTTCCCCTCTTTTTCAAG
ATAGCCGCTCGTCAACGACGTTAGCTGGTGCAAGAAGCGCTCCCTCCAGTTCTGCAACAG
CACTTCACTTCTCCCTGATGTTGCCCCAGACCGCACGAGCTTCTGAATGTTTGAGCAGCT
GAGTTGGCATATCAGCAGCTTCTCCTCATGGTGGTTATCGATTTCTTTATCAAATATCTG
GCGGACCAGGTCACCGTCCGAGTCCAACGTGTTGGCAGTGTCCAAAACCATCCTTAGCAA
GTACTCGGCGTATTTCAGCCAGTGCCCAAACATGTAGGTTATGAATTCGAAGCTCAACGC
AATCACTCTGTCCACTTGCAGTGGCGTGGAATCATCACATAGCTTATTGCCTGACCCATT
TCCAATTATCTTCTGGACATCGTTGGCAAGTTTTTGCCGAAGATGGACATCCTCATCCTC
CAGCAACTGGATGCATATGAACCATAAGTCAAGTATCTTGCATGCATAGAGACTGGCAAA
TTCATCCACGCTAGCTTTCAAGCATTTCTCCTCGAGATGGCATTCGTTGTCCTGTTCCGA
AGGAATGTATGCGTTGGACACACATGCTTTGACAAAATTTGCCTCTTCAAGAAGACCTGA
AGCGATAATTGCTTCAGCGGCAGCCCTACGAGAATTCACAGTTTCAGATGGTGCACTTTG
CTTCTTAACAAGACTGACAAAAAGGTCTGTGCTGATAATTGCTGCAGATAATCTATTCCC
TTTGTGGATACTCCCAGAGGAAGTAGAGAGCTCACTCGTTTTAAGACCTTCCGGTAACAC
ACCATCCCTCATCAATTTAGCAAACTGCTTCATGCACATACCCATGCAACATAGGATTAT
TTCTCTGGTTTTCGCATGTGACACGGTGCTGTTCAAATGAACTAATCTGTCCCAGATGGA
TAAAAATGTATTGCAATCTTCTCCATTGTTGAACTGGCATTCCACGTTCCATGAAAATAT
GATCCTTAAACTATAATAAAGGCATTTGGGGTGTTCTTCCACAGATAACCGTTCGATAAT
CACAGAGTGCAGACTAGCCCTGGCCCATTGATGCAAAATGTTCTTACCATCACCAGACCT
GATTGATTTCACAAGTTGCAGAATCCTCTTCAGCACTGTGATTCTAACATCATATATAGG
ATCGGCAAGGCAAGACATTATCTCCTTGTGCAGCTCAGTGAGGGAGACCACACAAGGCGT
CTCTGACATGCTTGAAGTCGACTGATCAAGTATTTGCAATCGAACATCTTCCTCAGCAGT
TTCATCATGTCCCTTGGGAATACCAACACAGCTGAAATATGATGCAACTGCTTGCTGCTG
AAATTCAATCTGGGTAGGATCATGGAAAGCATGGTGAGTTGATGTTACATTGTTCAGACT
CTGGGAACTCAACTGTAACAGCAGTGTCCGGATAACGTCAGTATGCTTGCTTTTTCCTGT
CCTTGCAACATCAAGCATCTGATCCAGAACCCGGAAGTATGATGTACTTACAACAGGGCA
TGCACATAATTTATGGCAGCCAAGCCAAGAGCACTTCGAGAGAACCTCGATTAGTTGGCC
AAGAATCTGATCCTTCTTGTTACTGTCAGTCAAACCTCTGAAGTTGCTATCAAGAAGGGA
AAACAGCTGCAGAAGAAGGCCATGGATTGAATTGAATGAAAAAGACCGAGAATTATGAGT
TGACACTTTACGAACACCAGAAGGTAAATCATCCAGTATATCACCAACAACATGCTGCAG
CCTCTCATTAGATACCAGACCAATTAAGGCCCTTGATGCAAGGACACGAACCCGGTAGTT
ACTCTGGGTAGCACATTTCTGGATAAAAGGTAAAAGCAAAAATGGATCTAAAGGATCATC
AATTGCACAGCTAATGGGTGACGGCTTAAGCCTTGATAAAAGAATAAGAATAGGGCACAG
GCTGGGGTGTATGGCTTTTGCGATATGTGACTCTAAATTGCAGGAAACCACATCAGCTAA
TAGTTCTGTTGCAACTTCCAGTTCACTACAAAGGAAAGGATGAAGTGCCGGGTACCTACA
TTATAAAACAAGGCACAACTCAGTCAACAAAACAGTCAATCCCACAACCTGAATATTAGT
TTGGGTAATTATTGGATATAATGTTCCACCATAAACGAACACAAGAATGACAATCCTACT
TCAGGACTACAATAAATAAACTATTATTTTCGGAAGTAATTCCACTCTTTTAGGCTGGTC
ACAATGGGGAGGAACTTAGCAGTAACATCACACACTCCAATACAACTTTGCTTA