Contig Data
morexGenes
Links



Map Locations of contig_1564836 (4174 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1564836

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_13115 3 1849 bp MLOC_13115.2 Available Available LOC_Os04g53460.2, FRAME:+2, EVALUE:1e-109, 13104.m05501 protein AT hook motif family protein, expressed





CDS Structure of MLOC_13115






Contig Sequence (4174 bp)

>contig_1564836 4174 assembly3_WGSMorex_rbca.fasta
GGGGGTCCCCCGCCCCGTCACACGCGACCCACATCGCCCGCCCCCCGCCCCCTCCGATCC
CCCGCCATTCCCTTCCCCCCACATCGACGAGAACCCTAGCCCCCGAGCTCCTCCGCCCCC
CATCCGCAGCTTCCCTTCCTCCGCCTCCTCCCCCGCCAGCGGACTCGTCGCGATCATCTC
TCCTCCCAGAGGCGACGGCGCGCGCGCGGAGAGGACAAGATTTCAGGGGTAATCGCGCAC
TCCCATCTGTATAAGCCTGCGCCTCGCCCAACTGCGTCGCTTGTTTGCTTGCTTGTTCCG
GTTTTATTTTTCCGAGGTCGTTCGATCGGTTCTCCGAGACTCTCGGATTGGCTCGGCGTT
CCTCTGTTTTGCTCCGTATTGCTCTGCCCCCATGATGCGTTGGGCCGTGCCACATGGTGG
GACGAGATGGGATGGGATGGGAATGATTTTCTAGATTGACCGGGATATTGGTTCGATTTT
TTTTCTAAGGCTCTGGTCGTGTCGGATGGGATTTCGATACGAATTGGCAAGTTAGATGTC
AGCATCAAGCGTTTTATGTCCAGGACATGTACGTATGTTCTAGGAGCTCACTGTTTAGAA
TTTAAGATGTGTGCGTAGGCTTCAAGCCACTCGGTGAGGTCTTGCGCAAGGAAAGTATTT
TTTTTTTAATGTGGGATATATTAGGTTTCTTTTATGGAAAAATATGGCTTGTAAGTTTGT
AGCAGCATCCAATTGACTGGCTTGTGTACACTTGTATTGTCAAGATGCAGTTTAAATCAT
TGATTGCAAACTGTAGCCATGTGGCTTCTGAAAACAGTGTCATGAGAAAACTGCCTTTTT
TTCCATTCAGTTATTGGCACAGTTCTTGCCTCCTTTGTAAAGAAAAACTGTTGTTCTGAT
TCAAGATAAATTCAAACCAACAGGGTAGTCCCAGCACTCTTGGGTGCAGTTGTAGCTGCA
AAAGGTTGAAGCAAGCCAGTAGAGATGACATCAGAAGGGAATAAAGCTGCTGCGCCTAAT
GAACCGCTGCCCATTGAGCCACCCGCAAGCTCTGGCACAAAGCGTAAGCGTGGTCGCCCA
AGGAAGTACGAGTATTCTACATATGAACAACCTCACATGGCACAGCCCGTTCAGAGCATT
CCACCTCTTCGCAGCGCATTGTATAACCCAAATATCCGACATGATGGGGTGCACATTAAC
CACCCGTTAGGTGGTACTCTTGACACTAAAATGCATACAGTTCATGTGCTGCCTGCACAG
CAGACTCAGGGTTATAGGCCCAGCCGACCTGTAGATTCTGGTACTACAGTCAAATTTCGT
GAAAATCAAGCCTCCAACAGTAGCAGTGCTCATGTGCGAGGCAATGTAGGCAAGGATGTT
ATCGTTGGCAAGCATTTTGTTGGAAAGATGACCAAGCAATGTCCTGGGTTTTCTCTTATC
ACGGTGAGAGTGAAGGACAATCAGGTGCTCAGAGGTTGGATCCCAGATGAAACTAACCTA
CGCCCAATAACACCGAAGGATGATCTTGCCCCTGACCTCCCCATGCTCCAGCCAAGTCAA
CTTCAGAAGAAAGCATCTGCAATCCACAGACAAGCTGCTCCTCCCTTACCAGTCCACTTG
GAGAATGTTACAATTGCAAAGCCTCTTCAGATGAGGAGGCCTGTGGAGACATCTACTCTT
AAGTTCATCATCCCTCCTCCCGCTCCAAGACCTTACGTTGGCTCTGGGGTTGTTGCAGCA
GCACCTGTTTCGATTATATCTGGGAATGTATCAAGGCCTTTGCCTAAGCAAGACACTGGA
TCTTTGAGCCAAGAACCATCAGCTACTGTGGTGCCAGTTAAATCCGCTCAACCTGTATTA
GTATCATGCAGACACGTGGATCAAGATGTGCATGTTGAAGGAAAATCTGTCCCTGAGTTT
AACAGTGATTCTGAATCTTCAAGTGGAAGCAAGGACTCATCAGGTATGCTGAAGTTCAGA
TCAAAACCACATTGACCTGAAATCCTAATCTGTCTTTCCCCAGGACAAGTTCAGAAACTT
GTCAACCCTGTCTGTTATGCATGACTCAGGAAACTTCATGTTAATGCTCAGCACTTGATT
ACCTGAAAAACCGAATACTATTCTTGTAGATGTAGTTATGAAGGAATCACTAGGTTAATC
TAAGTTTTATGCAATTAAAAATTTGAATGAAAGCTACCTCTAATATGGAGAAGAGTTCAA
TTCATCTGTCATGATTTTGGATCTTATTTTGGCAGGCCAATCTCCGCGTGGTTCTCCAGC
TGCCATGGGTGAGACTGATATAACATCAGGTATCACCTTAGGCCCTGTATGCTTGCTCAT
TCCCTTAATGAGTAAATGGCTTTTTAATGAACAATTAATGGTGATATTTTGTCAGGCTAC
AAAGAACACTCAAATGCTGCTAATAGCAACCAACATATTTGTAAGGAACCATCAGGTAAT
ATGTGATTTTATTGTTATTTGGTTGATGCGCTTAACAGTTATCCTGAGCTAATTCTTTGG
CTGTGAAAATCTAGATAACCCAGAACAGTCTGAGCAACCAAAGACAGAGCCTAACATCCT
GAAAGGAGTTGATGACCCAATGACAGGAGCCTCAGGTAAACCAAGACTCATCCTATCTGA
TTAGTCTTTCTAATCATACCTTGGATGACTTTTGAATCCTCATTTTATGAAGAAAAAAAT
ATGATGAGTGAAATTTGTGTAGATCAGCTCAAAGTGGGATATGAATGATTGGACTTGTTT
GCCTGTATATGAGATGAAAAATATAATACAAAATAAGAAGCTTCATTTTTTTAAAAACGT
CTTGATCATTTTTACCTCTGTACTCCCGTGAATAATGCAATGTCAATGCCACAGTTACTA
CAGTGATATGCACATGCCAAAATATTTTGTTGTCTGCCATGTCAAGGTGTCCATAATTTT
TTTCTTTCTTAGGAACTACAGTGATAACTTCTTTTTCTCTTCAAGGGCTAACAAAGTGAT
TGACCTTGATATTTGCATCCCAGATGATGTTCAGTCTACTGTTAAGGAAGATGAACTGAA
GGTTGACAGCCAAGAAATCAGGCTGACAACGACAACATAAATCCTGCTGTTTGGTTTATG
CTGTTTCACCAAGCTTACAAGAATCTCAACGTAAATTGGTGCCTTTCTGTGGATGGTTGA
ACCCTAGAGCAGACTAGCATTATTCATTTTTTACTCTTCTGCTCTGACTTTATACGGTCA
AAGGTTCAGAGGAGAAACAAATTCGTAGAATATTTTTGACCTTGCAGCTAGTGCTTATGG
CAGTGAGTAGAACGGGAAAAACATGTATATAGATTTTAGCATTTTAGGAGAATGGCAAAT
ATATACAAGCGTCTGGATGGTAAGTGGATCCTCTGCATTTCTTTCTTAAAACGCAGAGGC
GCTACTGAGCTTGCTCTTTATTTGCAATGGTTCTACAGTTGATCTTTTGCCAAACATTTT
TTGCTTTCAGCGTAAACTATGGCAACACACACTTCTGTCTCCCCTATATTTGCTTATCTG
AGAAAATATTATCGAGCAACAACAAATTCAGGAAAGTAAAAGCCTGGCAGACCTGTGTTT
GCTGGGGTTTTTTTTCTGCAGGTAGTTAATTTGGAAAAGCAGAAGCGTGATATGCTGCAC
TTTGGGTAGTTGTTTTCGAATGACTTGCGCTAGGAATTTCTTCCATCTTGAGAGGCTTAA
GAGGTAGGTGTAGGATGAAAAAAAACTAAGGGAAATGGAGAGCTCCCCGGGTCACACAAG
AGCCAATGCTAATGGCATGAGAAGTGATAGTCATCTACTTCCTCCCTTCCTAAATATAGG
TCTTTTTAGAGGTTTCATTAGAAGACTACATACGGATATATATAGTAATATAGACACACT
TTAAAGTATAGATTCACTCATTTTGTTCCTTGTGTATTCCTCTAGTGGAATCTTTAGAAA
GACTTACATTTAGGAACGGAGGGACACTAGTAGAAAAAGGGCCTTNNGTCCCGGTTCGTA
AGGGCCTTCTGTTCCGGTTTTGGAACCGGGACAAAAAAGTCATTACAAATGCCCTTGGCC
TTTAGTCTCGATTCTTACACGAACCGGGACAGATGGGCCTCCACGTGGCCGGTGCGGCGA
ACCCAGGCAGGAGGCCCTTTGGTCCCGGTTGGTG