morexGenes - Barley RNA-seq Database

Contig contig_1564627
Source Contig contig_1564627
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564627 (7830 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1564627

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_13019	3	1950 bp	MLOC_13019.2	Available	Available	LOC_Os02g42850.1, FRAME:-1, EVALUE:4e-90, 13102.m04752 protein MYB family transcription factor, putative, expressed
CDS Structure of MLOC_13019

Contig Sequence (7830 bp)

>contig_1564627 7830 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACACTAAGATGTAATCTAGTTATCAAATGACAACTCATATCTATG
GTTAGAAAACCTTAACCATCTTTGATCAATGATTTAATCTAGTAGAGGATCACTAGGGAC
ATAGTGTTGTTTATGTATCCACACATCTATCTAAGTTTTCGGTCAATAGAATTTTAGCAT
GAATAATAAAAATTTATCATGAACAAGAAAATATGATAATAATCAATTTATTATTGCCTC
TAGGGCATATCTCCAACAAAAGTTCCAATGTCATCACAAGTAGCAGGGTGCCTAAAGTTT
ATTATCTAGCCTCGATGCTAGGATAGTTGGCATTATATATGAGAACCTAGCAATAAGTTG
TGTGACTAGAAGACCATGTCCGTAATACACATGCGTGTGCCAGTGATGCCCTTGTTCGCA
CTCCACTTCGACGTTTGTGCATGAAGTGGCATCCTAAAAGCACATCCACAACTCATCCAC
GTGTCGACGTCTCCGTGCTGCAGTCGTGCACGGGCGATGCCTATGCATCTTGCCCCTCAT
GCATCTGGAGACCTGGCGAGTCCTCAACTTCAACCACTAATGTTGCATGCAGGCGACAAG
GGTGCAAAGAAGCACAATAAAGTACAAGCAAATAGAGAAACCTAGGGAAAAAATAATCCC
AAGCTCTAGGCAGGAAGCAAATCAGCTCAAGTCCAAGCCCAAGCAAGCAGGAAGCCTCCT
CATAGTGTAGGGGTTTATCCTAATGGGCCACTACCCACCTGCTAACCCAACTAGGAGCAC
ATGGGACAAAGGACGGAAAATTACCTTAGACTATCCTCCTACCTCCTTACTTCAAGGGTA
GCATTGGTTATCTGTCAAGGACCCCAAGTCCTTATAAGTCCCCCATGGGAATGTAACTCA
CCCACTCTCACTTGAAAACACTCAAGTGGAGAGTCACTCTCCCCTTCCAAGCACCTTCAG
GAGGGCAAACGAAGGCCGGGAGCCCGAAGTCTGAGGGACCTAGTAAGGCTCGGACTTGTC
GAGAGTCGTCAGACTCCAAAAATGGCTCCACCCTAAGCCCCCTAGATACTACTGTTGATG
ACCCTCCCGTAATACGTCGGTCGTGCTCCGACGAGACGATTGGACCTATTTAAAAACATC
GCTCTATGACATTTTCGAGTGTACAACGACCTTTGACATAAGGCCAATATACACACCCTC
GCTGATATCTAACCATGCTACTAGAGATATCCCTTTTATTATTGAACATTAATGCGGAGA
AATGAGGGGTGGGCGGCGAGGGTGCACCATGCCTGCATGCGGCGACACAACGGAGGAGCA
CTAGCGCGTCCACCACGCACGCGAGGATCTCAAGGATGACGTCATCGATGAGCTTGTGTG
CAGCCATCGAGTTATTGGTGCAACTTGGGATTAGCTAAAGTCGCCGGCAAGTTGACGCTC
ACCCGAAGTTGCTCGCTCATGCCACCTGCTCTCTTTTCTCTTGTCTTGATGTTAAAAGTC
ACGCTATGCCTTTTTTGCTTATTTAAAAAAGATGAAACACAACTCAGGTCCGCCCTTACG
TGTATTTAACACGTGAAGTGCGGGTTTATTTTTAAAAACTTTAGGATGTTTTTGATAAAA
ATATGCCACGGATTAAGAATATCTATTTTTCTAATAATAGATATAGATAGATGGTGATCA
CCGCGAGAAGTCCATCAAAAAAACCTTATGTCACAATTATGGGACCAAACATACTCCTAA
TCTCATGTTATCACGACGACAACAATAATAAGGAGAGAGAGAGAGTAACAGAGAAGCGAA
GGCACAATTAATATGTTTGAAGAAAAAAAAGAAAAATCTGTATAAAAAGCTTGTAATATG
AGCCCTCCGTCTTAAAATAAGTGACTTCAAAATAATTCAACTTTATATTAAAATTGATAT
AAAGTTGAATAATTTTTAAGCCACTTATGTTAGGATGGAGGGAGTACTAAATAAATAGTC
ACGACTCTATCACAAACATGATGTATGGTTATGGTTTTGGGAGGAAAGGCGATGCATGAT
GAATTTCCTACTACAAGTTGGGCTGGCTTCAATAATTGTAAGATAAAACTAATCACGGTA
CAGCTTAAAGCCAAAACGTGAAAGGTCAAGGGTCCCTCGACAGTTGTTAAAGTGGAAGAG
AACTTGACACTTCTCTTCACAGTGCTCTATTAAAGCGAGATCCGGGAAGATAATATTAAG
TCTTACTAGTAACTACTAGTAGGAGCTAGTATATCAAATGAGCAACAACATGTGCATTCT
TCTTGAACCCTTTCCATCTTACTGTCGGTGCTCTACTCTCCGAGCCAAGCTAGGCGGACA
GCGTTGCACTGCACATGCACCTGCATATATATAAATATGTATGTATATATATACGCTGTC
AAATTGCTCTACGCATACATAGACGGCCATAATTTACACTGCAGCAGCATTACAAACGCG
CCTCTTAATAACCTGACGAAACGTCTAACAAATCCAAGAAACTCTATATTCCTCCTCCTT
CTCCCTTGGCGATGCACGCCCTAGTTGAGTGCGAAGAACTCGGTCATGGAGAGCAGGTCG
CAGAAGCCGCCGCCGCCGCCCACCTGCATCTGATCCATGCTGTCGAACTGCTCCAGGAAC
TCCCAGCAGGTGCCGTTGTCGCCGAAGCCGCCGTGCAGGGAATCCTCCACGCCGGGTGGC
CCATCGACCTGCGCCGATGACCCCTGGCTCATCACCTGACAATGATCGCCGCCGCCTCCT
GCACCCACACCCGCACCCGCACCAACCACCCCCGCAGCTTCCGGACCAGGTGCCGCCGCC
GCCGCCGCCCCCATCTGGCCACCGATGTAGTCCATGTTGAGCCAATCTGCGAACATCACC
TTGGGAGCCACGGGCGCGTAGGCCCTGCAGGCAGGAGGCTCGGTCACGGTCAGGCAGCTC
GAGTCGGCCGACGACGACTCGTGCGGCGGCTCCGATGAGCCGGCGGAGTTCGATGGCCGG
CTGGCCCGTTCCTGCACCGTACTAATAACCTCCCCTGGGCTCGGGCTCTGAGACCCGTCT
GAGTCCGCGGCGGAGCTCGCCGCCGCCGGCGTGGGCGAGTTGGGCGCTCCCTTGCCGCCC
TCGACCCTCTTCTTGAGGTAGGAGTTCCAGTAGTTCTTGACCTCGTTGTCGGTCCTCCCC
GGCAAATGCCGTGCGATCCTCGACCACCTGCGGTAGTACAAGTTTCGCGTCAATAATTAA
GCCAGTGCGTCACAAAGTTACTACTACTCCTACTAGTACTTGCGGTTCACTTGGTTTCTG
TCGGTCGGCGCGCGGGTTTCACTTAGTGGGAAAATGATTTCAGCTTTTGCATCGACAACT
TGACGTTTCTTTCTGCTTTAAGTTTCTCGTTCTTTTCTGCTTTTGTGGCTTACATATAAA
ATATACAGTAAATATAAATATAAACAAAATGTGTCACTTGGGTGAGAGGGACGAGCGTGG
TGTACGTAGTCTATTCATTCATGTTTTTTTTTAGGCAACCTATTCATTCGTGTGGACCAC
CGACCGATGGATCCTTGGATATTTTTCGGGGGACATAATTGCAAGGCCCAATAAAGAATC
TAATCTCCTCGCCACGCCACACTAGGTGCCAGTTGGGATTGTGAGGGCAGCTGTTTCCAT
TTAACTCGCAAGTGAGCGCGGATTGGTCCAAATAGTCGACGCCATGTTCTCGCCGCTCTA
CAGCTAAATCAATAGGGCCGGGCCGGCGGTGTTCTCTACTAGAGAAACTCAGAAATAGAA
GAAGAATGTCTTTTCCAAGATAGATAGATAGATAGATAATGATTTTGAGTTTGAGGAAAC
TTGCGCTAGGACGCAACTGTACTGTATGCCATTTAGCGTCCGTCCAAGCCCACGATATTT
TAATAAGCTAATAAAACTCGTAATAATGGGGACGAAAAGCAGCTGTAATCATCACAATGT
GCACCCGGCAGACAGAGCGAAGAAAAATCTCGTGGATTTGGAGCGTCCGTGGAGCGTGGG
CGTCAGCATCAACTCCACTAGGGAAAAAGGTCTGGGTGGCTACCATCACCGGTCTCCCTT
TCCCGTTCCCTCTTTTCTTTCCTTCCTTCGCCTCAATCAACGTGTTCTACAACCGGATTG
CCGCCAGCTCAGCGCTGCCCGGCAACGGAACGGACAATTACACCTGCCCTTCACGTCGCT
ACAGGTGATAGTAGGAGCGTGCTGTGTGTGTGTGTGTGGGGAAACCTAAAAGGAAAACAT
GGCGGCATCTGTAGACAGACGACGTGGAGAAGTGTCTTTCGATCGTCTCAATCATTTGCG
TACAGTACAGGCTGCAGAGGGTAAGTACAGTACAGTAAATAGTGTGTGCTGCTTACTTGT
TGCCGAGGGCGGCGTGGAGGCTCATCACCGTCTCCTCCTCCTCCGGCGAGAACATGCCGT
GCTTCAGCCCCGGCCGCAGGTAGTTGATCCACCGCAGCCTGCAGCTCTTGCCGTTCCGCT
GGAGCCCTGCGCGCCGCGCCGGAGAATTTTGATTAACACCAGTGATCCAATGTGCATTTC
TCTTTCGGGACATATGAAATTAACTAACTACTACTACGACCAAACTGAGGCCAATTCAGG
CGAGCTGGCCGGACAAGCAACGAAATTCAGGCGAGAGGCGCCGGTTACCGGTGCCTGAGC
GCCTGATCGTCGGCCCAATGCACCGAATTCAGCTCAATTATGCCATGCCCCCTTTCTGCG
CTTCTAGGAATGCGGATGCAACGGCGGTCGTCGGCCTTACCGGCTTTAGCGGGAAGCGCG
CTCCAGCAGCCGTGGCCGTGCCGGAGAATGTAATCGCGGAGCTTCTGGTCCTCCTCCGGC
GACCACAGCCCCTTCCGGTAGCTCGGCCTGGGCTTCTCGCACGCCTTACACCCCATTGCT
TGCTTGCTTGCTTGCAGGCGAACGACCGACGCCGCACGAAACCTCAGGGAGGTCTACGGG
ACGCAGCACCGGTGGCTTCGGCTTCGGCTTCGGCTTCAAGCCTTGGGATGGAGGAGCGTT
CTGGCGTTTCCACAGGGGAGCAGTAGGTAGGAGTTTTATAGCCATGGAACGCGGGTGTAA
AGCAGGCGTCGTTTGGGAAATAAACAAAACAAATTACGTGTGCGTTATCATCAGCACTAC
TAGCTCAATTTCGCGATTGCTGGTTTTAATGTACCGATGATATATATTGTCGAAAACATA
TTTTTCTTTGGCAAAACAAATAGCGAAACCAGCTAAAACCTTCAGTAAAAAGGAATAATC
TATAGCTATTGCCGCCTAAGAAAAATTATTGTACTAATAAAGAACGCCGAGAGACCACGA
AGCGTGATAAGTAATGACAATCAAAACCAAGGCCAGCTGCGATAGGCAATGAAGTGGAAA
ATAAGTAAGGTGAGAGTACAAGTAGTGGGGGGAAAACGGGCAAATCGTCTGCGATGACGT
GACAGATTTTCGAAAACCCGTTGCTTTCGTGCGGCATATGTTTTTCAAAATATTGTGGAG
GACACGCCTCGTCAGGTCGTAAACAAACGGTAACATCCGCGCCAGCAACAAGGCATCGAT
CAGTAAAGACATGTTTGATTTACTTGGATGGATTGATTACTATGGCTTGTAGATCTCCCC
ATTGCCTGGTTCTAAAGTGCAGCAGCAGCCAGCAAGGGTCTAAGATTAGAAAGCGAAACT
ATTTGTTGCTTGCCCCTTTTCCTTTGAGCCGGAAAGAGAGAGACTTGCTTGTAATAGAAG
CCAAGAATGAAGGAGCGGGGCGGGGCAGGGACTGTCTATCACCATTCAACACAGACGCGC
AGAAAGTCCAAGGGCCGGAACAAGCTGCAGCCCGGCTATATTGGTACAATCAACGCTCCA
TGATGAGGGTTGAAAGCTTCAAACTTGACTGTGTGGTCCGTCGGCCAGAAGATCCCAGCG
GGTCATTTCGTTGCCAGTTTACAAAGCGTGTTGGTGAATTCGTACGACACCAAACGGATC
CGTCGTCCGTGTTAAGGTTGGCCTGGCTTAACAACCGCCGACGACGCAGCATGCACGGCC
GCGTGCGTGCGTGCGTCGCGTCCGTGCCCGCGCGCGCGCACCGGCACCGCCCGTGCGCAC
CGCAAAAGGGAGGCGAAAGCGCCGGGGTGTCCAGCGTTTTCCACGCGGCCTCGCCGCATG
CGGCGCTCCTCCGGGGCACCGACGACGATGCCGCGGGCGGTCAGTGGGAAGTGGGAACGT
ACGTACGTCGTCAGACCTGCGTGTAGCATATATACAACTGGTGGCGTGGTCATTTGGTCC
GTTCGTGCGTGCGTGCGTGGGTGTATTGGCGTGCGTGTTTGACGTCCGGATTTGTCCGTA
GCCCCGGATCAGGGTTGGTGTCTGGCTGTCAGGGAAAGGTTATCCCTTCCATCGATCGGT
GTCCAGCGGCATATGCATATGCATATCCCGGGGGAAAACGGCGTGCGGCGTACGTGCCCA
GCTGGGCCAACAGGGACGGGGAATTGAAGCCGGCAGACGTGCATGCATGCAGTATACTAC
TAGTCATACTAGTCACGAGAGCAGTTCTTGTAAATGGTTAAGAATCGGTCACTTGTCTTA
GTCCCCCAACAGAGGGGCTAGCTAACAGCCGACGTCTACGTATGGCATGGTTAACTAACT
GGGGTGACGGACGTATGTGCATGTGGCCGGGTCTCACCAAACTCGAAATTAATTAAACGG
ACGGGGTTTATTAGTAGGGGGGCTGCACTGAGCTGCATGCCTCGTGTCATCGTGCGCGTT
GGCGATGTGACCATGCACGTCTAGGCACGAGGCGGACGAAAGCTTTGACATGATTGATTC
CAACGGGTGTAGTAGTAGTAACAATTTTATAAGTCGTGCATGCAGGCGGCACGACAGGGA
AAATGAGAAGCCGTGCCATGACGATGATGTAGTGTGCACTGTCAGCGTGGCGTGGTCCCG
CCATGCATTGGCTTTTCTCCCTTGATGGAACCACCCCTTGATAACGCCCTTCTCATTTTC
TTTTGTCCATACCGCACTCCAAGGAAGATTCTCGTGGATATTGCATTGCAAGGGCAAGAG
CAACTCTAACAGCAACTTCAACGCGCCGATAAAACGGACCGCGATTTATTCGTCTTTTGT
TTGTTAGATCGGTTAAAAAATTTGATGTTCGTATTTTCATTCAAATCATTCCGTGCGTCC
AACGCAGTCACAGACGTAAATTTATAAATGCAGACCAAAATACAGAAATCACAAAAAGCC
CAATCAAAGGTAATTAAACATTAAACACAGGTCAAACTCCAATCCAAGTCCACAAACACA
ATTAAGACATAATTAAACATAAAAAAAGTAATCGCCCCGTGCGTTGCCCTAGGCATTGTC
GTCCTCCTCGAGTAGGTGAGGTCGATGAGTTCGGGTGCCGGGCCAGCTTAGGGACGCCAC
CTCCCAGGCTCGAGTAGCATCGTGCGACGACACCACGGACGGCCGGGGCGCACGCTGTCG
GGCATGCACCTCCGCCTCCCTCTCCAGGCGCTCCTCCTCCTGCTCCCGCGCCCAGTGGCT
ATCCAGCTCCATCTATCGCTCGGCCTGGGCGCGCTTCACCACCAGATGGCGCGACTTTCA
CTACAGGGCGTCGGCGTCGTGCTATACGAGATGGCTGGCGACCCATTTCCGAAGCCGACC
GGTCCAGTGGTAGCGTTCAATCATGGGGTCCTGCCCCACGTGTTGGAAATATGACCTAGA
GGCNNNNNNNNNNNNNNNNNNNNATATTTTCTGTTTAAAGATAATCGTTTATTATCCATG
CTATAATTGTATTGATCGTATAACTTCGTA