Contig Data
morexGenes
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Map Locations of contig_1564484 (5146 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1564484

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12956 1 700 bp MLOC_12956.1 Available Available None
MLOC_12955 7 3592 bp AK250624.1 Available Available None





CDS Structure of MLOC_12956






CDS Structure of MLOC_12955






Contig Sequence (5146 bp)

>contig_1564484 5146 assembly3_WGSMorex_rbca.fasta
AATTGTGTTCACAGCCCCATTCCTCGATCGTAATCCTTCTTTTAATTTATCCTATACGAA
GTTATCCCGCTCCCGCAGCCCAGCCGCACCAGATCCTGTCGCCCCATCCCCCCCGCTCCC
GTCGCCCCAGCCGCTCCCGTCGCCGGCAGCCGCCCCCTACCCCGCCAGCCTCCCCATTCG
CCCGACCGCCCCGAGCCGCCCGAGCCGCCCCCATCCTGCCGGCCCCAACCAAGCCGGCCG
CCGGCACCAGCCTCCCCATCCAACTGAACTGAATTGTACTGCAGTCGCGCTCCATAAAGG
ATTGTTGGTGTGACTGCTCCAGGCCGAGGCAAGCATCGCTGAATCACATCTCAGGCCGAG
GCAAGCATCGCTGAATCACATCTCAGGCCGAGTCTGCTCTGGACTTTGGTTCGCTGCTGG
TCCATTCCTTTGGGTGTGTGTACAACAGGGCCAGCAGCAGTTTAGTCTTCAGTTTCGTTC
GTCATGTTCAGTCATGTTCGCCGTAGCGAGTCTAGTGTTGGCTAGCTTAGCCTAGTGCAT
GGCAACCAAGCAAGCTGCATTCCCTGTCTCTGAGTTAACAGGTACAGTAGTCTTTACGGT
ACTGTCTATAGGGGAGCATATTTATGTATGGAGGCTTGACATGTTCATGCTCTGCTGAAT
TTCCGTATATATGCTGGTTGTCTAGATCCATCTGTTGGCTCCTTTTGTTCAGATGCTTGT
AATGTGAATTAATTCATCTCCTGGAACATTTTCCAGGTTTAAGTGGGACATATATAGCTT
AGGTTTTTCTTGCAGGATAGTGAGATCCCCTTCCATCCCCAATTTAAAAGCCAAGCGCTA
GCGGTGGCTGGAAGAAGAGATCCCTCCATTCACTTCCATTGACCCAAACAAATCATGGCT
ACTCCTCCGCGCCATCCGGCGGTGAACGACGTGTACCTGACGCTCCTCGGCGCCAGCAAC
ACCCTCGCCGATGTCCAGCGCCGCCTCGACCTCGAGTTCCGTGCCTCATACCCTGACCAT
GTCAGTAATCAAACTCCTGTTCCTCTCCTCCTCTCTAGCCGCTTCCTTCCATGACGGGAT
CTTGGTCATGGTTTCATTCAGGCAAACCCAGCAAAACTGGTAGGGCGATTGAAGCGGGTG
CAGGAGGAGGTGGCTGCGCTCAAGGATCTGTGCCGCGACCTCCTCGCCCAGAAGCAGGTC
AGTCAGATCCCCTCACCGAATCCTCCGCACCTTCTTCTAGGTCTACTTATCTTGTGATCG
TGCGTGCATGAGCAGAAGCTGATCGACATGATGCGCACGAGTCTGGCTGCGCAGCGGAGC
GCCACACAACGGCTGCTCGCCTCATCCGGGCTGCCCCTTATGACCGACGAGGAGGAGGCC
ACCTACACTAGCCTCAAGAAGGTGACCCCCCACCTAAAAAATCCTGCAATCTAGCTACAG
GCCGTGAGAGATCTGATGAATTTGTTCGCTACTCTTTGTTTACGCTGCAGGTGATCGACG
AGTGGACCGATCAGCTGAAGCCAATGGCAGGTAGGTTTCCTTTGCTTTGCAGCAGTTCAT
TGGATTTGTGATGGGGAACTCACTCCAACTGGCCGTGGTTTCACTTGCAGGTGATGCGGA
TGGGGAGAATGAAGACACCGATCAGATCCTCTTCTCCGCAATCGTTTAGAGCGACTGAAA
GCTCCTTGGGGCATCGACAATTTTTCTGTTGGAAGTTTTTTGTTTCCATCTTGTGTGCGT
TTTTAGCAGATTGCGATGGGCTTGTCAGTAAGCGCCTTGTTGAGTGGATCTGAGGAAAAC
AGTGTTGATTTCTTGGTTTGGGATGTTGTTCCTGTTATGTATTTACCTCCAGTGTTCTTC
ACACAGTTTTCTAGCTGCTTCGCCATGCAGTGTATTTAACTCATTAGCTCTAACCACAAA
AAAGAGAAAGATCCGTGAGCGTCATTCACCTTTTTATGAGTATGGAAGGACATGGCACTG
CATGTTTTATTCTTTTTGTGCCTTTTCAAAAGCTAAATTGCACGAATCCTAATGTTATTA
AGATAATGTTGTCATTGGCATAGTTTAGAATCTGACCATTTGCCAACTTTTTTTAAGAGA
AATTGTCCTTTAAAGATGAAAGAGCATTTGTGTCTTAACTGTTAAAGGGGAGTTGGTGAT
ACATTGGATGCCTGGTTGTGGCGGATGAAGCGAGGTGAGAACATCTGCTGTTGGTGCGGG
AGAAAGCCGGCAATGCTGTGGCATGATGTCATGACGTGTTGCTAGGGGGAAAAATCAATT
ATGGATGATCTAACTTCCTGCACCTGCTTGTTGAATGCTTGCTCCATGTTCGGTAAAAAT
GATCGCCTTAGTTTTGCTCTTCTTTTATTAGTATCAACCAGCTTAGCACGTATTCAGTTT
CCATGAAGTATTCTTATAATTCAGACACTATTTTGGCCAACCTCATCCACCTCTTGCTGT
TCTACCGAAGTTATCTTTCTGCAAAGAAGACTAGATAATCTGATAAGAGCTCATTGATTA
CGATATTCAAATTTTGTGATTCAAATGATTTTTCATGCCCAATCCTCGATGTTCAGGACT
ATATGAATTTCTGTTCTATATTGCAAATTTGTGTATTGCTGAGCTTGATATTGGTGGCAA
TTTCAGATCCTTAACTACCTGAAAGCCACATCTGCCCAAACTGGGATTAGTGCAGCAAAG
GATCACAATAGTCAAAGGTTGAGGTGAAACTGACTGAATTTTGACATATAGAAGACAACA
GCCAACATTCACTTTTGGCAACGGCTTAATTGTTGGAGAAGACAAGACACACTGGGTGGA
TGGGTAGAAGGATAGGCAAGGCAAGAAACCAAGGAAGATATCATAGAGGGAGGCCAGAAC
ACCAACATTCATCATGATGCAGTTGAAAATTATGCATCGTCACATTTGATGCGAGTGTTC
ATGGTGTGGAATGATTTGTTATTCTGAAGTGATCAAGATGAGCAGGGTATTTTGCTAGTG
GTCATTAATTTTGATCACTTGGAGGGATCAAGATGTCTGGCAATGCTGATAAATCTCAGC
TTGCAGCTGAGCAAAGGGATTGAGCAGGGTTCAAGCTGAACGTGCAGCTGCAGCTGCTGC
CCACAATGTCAATACCTATGAGTAGAAGGAAGAGGAGCCAAGCCGCTGGCAAGAGAGGAA
TGAAGCCAAGAGACAGATGTATCTGGCGAGGAATGATGCATATTCCCAATTTCAGAAGTG
TTTCCAGCTTGGGTACTGGAGATATGAGTGCAAGAACGACTGTGCCTGCATATTACGGCC
TTAAAGAACGCAGCAGCTTGAAAACCCCAAGTTGACGTAGTCAACTGTGTTAGAGTCTTA
TTAATTTGTGAATCCTGATCTTGAAAAGGAGAGGGAGGAGGAAAAGAAGCTGATGAAAGA
AAAGATGGAGAAGGAAAAATCTACAAGAAGGAAGGAAAAAAGTAAGAGAAAAAACCGTTT
ACATAATGGTTCAGATAGGCATAACAGTGAGGACTCTGCTCGACTCGGACACTGAATCAT
CAGCTACCGGCTCTGGATATTCTTCTGAAAGTGTCACTTCTTCGAATTCAGAGAACAAGA
AGCAGCGACCCAAAGGGGGGAAGAAGAAGAAGAGAATACACAGAAGGGACGGCTCTGGAT
ATTCCTCTGAAAGTGGCAGTTCTTCGAATTCAGAGAACAAGAAGCAGCAACCCAAAGGGG
GGAAGCAGAAGAAGAGAATGCACAGAAGGGACAGCACATCGACATCGCCATCAGATTCTG
AATCCGTTTTGGAGTCCAATTCTGTTGACAAGGGCAGCCGGAGGAAGACCAGTAAGGCCA
AGCAACAGGTGCTGAGGCTGATGAGCCAAAGAACGGAAGAGGTCAATGAGGAAGCCAAGT
ATGTCATCTCCATTTCTCTCCACATACGTCCTCCGAGAAACGAATGTAGCCGTTTGTTTG
CTGAGTGCTAGTATCATTGTTTTCCTGTACTAAGAAGTGTCTGATCTTTCCTATTCAAAG
ATGTCTGTAACAACAGCCAATCATGTAACCGAATTCATGTTTAATCTTCTAAATTTAGCC
TGGCTGTCTTCCAGGAAGTTCTCTGGGATCATTCTGCCTTGACTCATCATGTTGGGTTCT
TGCTGTATCTTTGGAGACCTGGCTTCTTATTATTTCCTATGAGAAAAGACATCACCTGGG
AGTTATTTAATGGCAACTTGCATCTCCTGCAGGATGCCGGATGATCGGCATGACAGTTTG
AGTCCTGTCCTCTGACAAGCTCCAGGATTCAATTGTCCAAGGAAAACTTCAAATGATCCA
GTTGTACCTTAGCTGTTTGTGATCCTAGAACCAGCATCTGCATGTAAGCCTTCTTATCTG
AAACTCTGAAATGCAACACCTTGAAGCATGGCTGCCCATCATGCAATGACATACATATTT
GGAACACCAGATCAGGGCCCTTCAATCTGAGGAAGAGCAGAGGACCCAATGCATCAATGA
TTGGGGAGCTCAAGAACATCAGCGAGGATTGCAGCACTCAGCATAATCAAAAGCTAAGCA
CAGTCCGAGGAGCTGCCCTGCCCTGGGCTTGAGCTGAGCAGCTGATCTTGCTTGCCATGA
TGTACCTCACCATTGTTCTTCAGCTGGTTAGTTACTGCTTCCTTTGAGAATCATTCTTTG
GCTACCATTCGTCTACCTATTGGGTGCTCTTCTGCCAGTCGGGGCGGCGATAATGGATTC
CTGCGGCCCGAGCACATGATCGATGGACGGACGACGGGATTGTTCCTGTGTGCGGGCTCC
CAGTCCCAGGCTACCTGTGTAGTTTGCCTTGTTGTTTACTGCTTCACGTTCCAGCTTCAG
AGCCGGTCGTTCTACTTGCTTTTGAACCAAGAGGAGGAATCTGTCAGCTCCGCTTGGATT
TACCGTTGGCCTCTATCGTCTCCATGGCCCATGGGCTGCACTGTGGTAGGTAGGTACGTA
TCTACTTGAGCTCCCTACAATGCAATTATACAAATCTGTCTTGTACATGTAGACGGTAGA
CTAGGGTACAGCTCCAGTACTGTACAACCCCAGAGCATATACGCTCTGAGCTCTCTGAAA
ATCTGAGTCATACATGCATGCAGTGTACTCCCTCCGTTCCTAAATA