morexGenes - Barley RNA-seq Database

Contig contig_1564449
Source Contig contig_1564449
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564449 (9378 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1564449

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12940	2	3558 bp	MLOC_12940.1	Available	Available	LOC_Os04g52540.1, FRAME:-3, EVALUE:0.0, 13104.m05389 protein retrotransposon protein, putative, unclassified, expressed
CDS Structure of MLOC_12940

Contig Sequence (9378 bp)

>contig_1564449 9378 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGATTTGCAAGATCCAGTTGTAGGTGCTCTAACTGTGTGCCTTG
TACATACTAAAAGAAATGTAAAAAAAATCATATCCTTTCTCAGGAATCAGGACTGCAGTT
CTCAACATGTTGGAAATCTTACATCCAACATCTGCTGGAATATGAAATATGACAAAGCAA
AAAAGAAGGAAGACTGAAAGTAGTTCTTTGTTGATTTACACTTTTACAGTAACAGAATGT
GTGCAGAACAAGTTTGTAACAAGCCAATTCGGCGAGCATGTACACAAGACAGCAAAGCTG
TAAGAGCCAATTTGGCGAGCATGTACAGAACACAGCAAAGCTGTAAAGAGTCAATTTGAC
GAGCATTGTAGTACTGAACACAGCAAACATGTACCCTAACAGAAGCGCCAAAGGCCTTCA
CCATACACAGCAAGAAGGCGCAGACAAGAAGCAGAACGCAGGGTTGGATTGGGGCTTACC
ACGCTGAAAAGCAGGCGCCATCAGATGAAGAACATGCTGTCTTTGAGAGCCTCGTGCACC
TCGGGCATATCCCTGAACAGGGGAGGACCCGCGGGGACCTGGTGGTACTGCAGGGACGCC
ATCCTGCTGTCGTAGTAGTCCCTGCCACGGTAGGCCGCGATGTCGGCGTACTTGATGGGC
GCCGTCAGCGACACCGGCTTGGTGCAGCGCGCGAACACGAAACACATGCGGTACACCAGC
TTCTGCAGGTCCACGCGCTCGAAGCCGTGCGCGTTCTTCAGCATGTAGTAGTGCGTCGGC
CGGCTTGTCCCGTGCAGCCCATCGTGGCTGCAGAGGAAGAAGTCATCGTGCGACCCGTCG
ACCACGACGGTGTCGACGACCGTGCCAGGGAGCACATTGCCGTTATCTGTCCGCAGCTCT
TTTCTGTCGTTGGGGAACAGCCGCGTGTGGTGCCGCTTCTTGGCCACGATCACTGTGATC
GTCGGCGAGTAGCCACCCTCGCAGATACCTTCCTTCATTGACACTAGCTCCTTGTCGAGG
ACCATATCGAACAGCTCGTCGCTCACACCGTCGCGGAAGTATATGATCTTTGCTGGCTTG
ACGCCGCCGTTCCTCTTCTTGTAAACTTCGAGGAGCTCCTTACACATGGTACCAAGGTTG
TCGATCTTCTCCTGGCGGTTCCTCTGGGGACGGATTCTCGTCACGTACTGGCTGGCGCTA
GGGCAATCCATGGACGCCACAACAGCTGCAATCGACGGACTCTCCGTGTCTCGTGGAGGC
GGGTGGTTCACGTCCGCGCCGATGAACATGAAACTTGTGCCAGTCACCTTTGGAAGCTCA
TCAGATAGGCGCATGTTGCTGCCTCCGAGCTTAGTGTTGATCTTGAGGGTAAGGTTGGAC
AAGTACTGGTCCTGGCTATTGCCTTCTTTGTTTGCCACCTGGCTCAACAGACACTGGGTT
TGGATTCCCAGCTCTGTCTCACAGATCATCTTCAGTATCTTGTATCCATGGTGCTGCTCA
GACATCGGGCAGAAGAGGAGCTGCAGCTTCTTCTGTGTGTGCTTCTCGGCATCCTTCTTC
ACCTGGATAAGCTTCTCACGCAGTTTGCCCGGATCAGATAGCACCGACATTTCTGAACGA
ACCACAGTACAATCTTTTTTCTCCATGTGAATACCAAGGGCAACACACTTTCTGACGATA
TTGCCAATGAACTTTTTTACATCAAGCTTTTCCTGGAAGGAGTCAGATGACGTAGCACTG
AAGTCGAGAATGCCCCAGCACTTCAGTACTTTGCCGTCTATCAGCATCATATCATTCATG
AGGTTCCACTGGCAGTTTTTCTTGCTGATATTGTAGTTGCGGCGGCCACTGGAGGAGCCA
AGTGTCAGGGTAGGAGGAGCAAGAATAGTACCCGTGACTTCTGTCATCCCTCTGTTCAAT
GTAATGTTAAATTGCTGGCCTCTGCTACTGCTGAAAGTAAAATGATAATTAGTGACTGAT
GATAAACATGAGTTCAGTTTGCTAAAAAAATTAAAATAAGATCAGATCCTTTCTTGAAAG
GAAGGCAAAGATCAATTCCGTCCAAAGAAAGAGAATTCCATAAAATAGTCAAAATACTTA
GATAACTTGAACAAACCTGGTTAAACTTCATTCTTATACTGAATCCAAGCATGGTTAAAC
TTCATTTTTTTAATTAGCGTCTATGTTAGCACAACTTTCAGGTTTTTTTTGTAGATCTAC
TGTTTACACAGAAAAACTATCGAACTAAATATCTAGCAAATTGCATTGCATTGGATTTAA
CAAATAAACAGCACGATAAATTAAGTTCCCAGATTTGACAAAAAGAAAGAATGCATGGTC
AGGCGTTTACTAACAGTAGAAGGGCACCCAAACTCAAAACAGTTACCTGCAAGGCCCTTC
TGGAGGTTCTACCATATCCAGAATCATCTTTTTACGGGCCTCTGATTTAAGTGGCTTGTC
CCTCGGCTTATGCTTGGAACCCTTTAGCATATTGTCCTTGGGATACTTCTGCCTTCGATG
AAGACTACAGAGCTCAATCGGGACATAATTTGGTCTGCCATTTTTGGTGCTCAAATCCAA
GCATGGAAGCATCTTATACTTAATCGCCACTTCATACTGCTCACGATAATACTCAACAAG
CTTATGGGGGGGCTTCCCTGCATCGAAATCCTCAAAGGTGATAAGTTGTGCAGGCTCAGC
TGTTAAACCTTGAACCCTGTACTTCCGAATTCTGGTCCCATTGTCTTTCCCTTTGGAGGA
CTTCTTCAGGTAATTCACTGTGATACAGAGGCCTTTCAGCTGACGCTCCAAATATTTCCG
TTGTTTCTCGTCCAGAGTTGTTTCCATGTCAAAGGGAATCCCAGTGTCAAGCCGCTTCAC
CAAGTGCTTAACAAGATCCAGAACACGGCTTCCATCTTTGCAAAATTCCATATCTGCACA
GTCCACACATAACACCAGCCCTTGCTCGGTGGCTTTTAAGGTCTGCGTGGTTCCTTTCAG
AGTTTCAATAGTAAAGGCCCCATCATGATAGCTGATCTTAGGACGCTGCTGCTGTGAATA
AAATGTCTGACCGATGATAATCTTGCCTGAGCTAGAGGCCTCACGCACAATGGCATCAAG
AGCCGGCAAGATCCCTTTAGCCACAGGTGGCTGAAGGGCTTCCCTCGGCAGCAGCTTCTG
CTTGAGCTCTGCTGATGCATTGTAGGTCCGTGAACGGACTTCCACTTGATATACACTTTC
TGGCAGTTCGGCGGAGGTGAACAGACGGCCCTTGCCATCAGACACAGCAGCTAATGAATC
TGGAGGCCGCTTAAGTATCTCCAAGAGTTTAGCCATTACAAAACTCTGGTCTGCCATGGA
GAGGTCCAAGCTTCCTGAAGCCCCAGAAGATAGCTTGATATCATAGCAAAAGATAGCTGA
TACCCCAAACATGATTCTGAAGTGGTTCACAATAAGTTTGACTTCTATCTTTTCAAGTGG
GACAGCACAGCCTAGAGGGGGAACAAGAGCAGTTAGAAACAACGAGGGTTTACACACAAG
CAAAACAGTAACTTAGCATGCTGTTAGAGGGGGGGAATGGAGAATCACCAAAAGCTACAG
TTTCCCTCAAAGTTTGGGTTGGGCAGACCCAAATTAAATTGCGGAAGCCTACTTATGAAA
TAACACACTCATAAGAAAAAAGTTCCAAAAACAATCAGGTACAGGTTTTCACTGGTGAAA
ACTGTGATGCTTTCTTTCTTGTCTTCTGATAAAGAATACGGTAGTTAAACGATGTCCTAA
ATGTTCTGAAACTACAAGGTGATATACCAAACACTACTGCTATCTGACAGGATTTCCTTT
TATCTCATATGCTGTGCATCCTCTAAAACAATTATTACCATCTCGGAATTGCGAAACAGA
GGTTACTAATAACAGTTTAGAAGTTCAGTTAGCATGTAGGCGAATTCATCACCATATCTT
CCACTTTTTCAAGCAAAACAGGATTATAATGACCCTATCAGGCTAGGAACCAAACACTTC
CCATGGATTCAAGACAAGAGAATAAGATGGATCAATAGCTGCTATAAGTACAGCTGTAAA
TACAGACAATGCAGTGAAGGGAACTTATGATACAGAGAGTTAACCTTCATTCCTATTTAC
CTCGATCTATAAACCTTGGAGCATACATAGGCATTCATAATACTACAACAGAACCGTATG
AAACTTGAGAAACTGCATAATCATGAAGCAATGGAGGCATGCAGCACATGGAACTTATCA
CGCAGAGAGATAAACCTCATTCCAATCTATCTCGATCCATAAAGAAAGAAGCACATTTGG
GCATCCACAATACTACAAACAGAAGCGTATAGAACTTCATATACTGCATAATCATGAATG
GTGGTCAAACTAAGAAACAATCTAAGATTACACCAATGCAAATGCTACTCTAAATCAGCA
CACAATTAACAAAAATTGCAATCACAGGCCCATAGCTTCAAACAAGATAGCAGTCCGCGC
TACTACAACATGGATGCCTGGACAAACGAATCGCCTTGACTAACCACATACGTGAAATCG
AACAACACAGGCTCTAAAGACTAACTATCACAAAATCGCTGATCACTTGATCGATCAACC
CCGCCCATGTTTCAAACATTTCAGAGGAACGAACAAATCATGGCAGAGTTCGCAAGGCTT
GCAAGTAAAATCAGGAAACAGTACTGCAAATGGTGCCCCCACAAGGCCTAAAGTTCTCCA
TGCTGACTCCAAACCATAGCATGAAGCAACTGATCCATTGACGCACTAATACAAGCCTAC
TTGTGAAATAACATATTCATAGAAAAATCCCAACAAGAATCAGATACAGGTTTTCACTGG
TGAAAACTCTGATGCTTTCATGTATTCTTGATAAAGGATATTGGTAAGTTAAATGATTTC
CTAAATGTTCTGAAACTACAAGGTGGCATACCAAACTCTGATGTTTTCATGTATTCTAGT
GCTGCCTGACAGGATTTTTATCTCATATGCTCTGCATCCTCTCAAACAATCATTTGGCAT
CTCAAAATTGCGGAACAGAGGTTACCAACAACAGTTTAGAAGTTCAGTTAGCATGTAAGA
GAGTTCAACACCACATCTTCATCCCACTTTTTCAAGCAAAACAGGATTGTAATGACCCTA
TCAAACTAAGAATCAAACGCTTCCTATGGATTCAAGATACAAGAGAATAATATGCATCAA
TAGGTGCTATATAGGTACAGCTCTAGTACAGATAATGCAGCAAAGGGAACTTATCAAACA
GATAGATAGTCCCCAATCATATTATCTCGATCTATAAACCTGGAGTTCGTAATAGTACAA
CAGTCAACAGAACCGTATAAAACTTGAGATACTGCGTAATCAGGAACCGGAAACAAAATA
TAAAACAATCTGAGATCACACCAACGCAAATGCTACTCTGAATCAACACACGGCCAACAA
AATTTGCAACCACAGACCCGTAATTTCAAAAGATAAACAGTACGGTTGGAGAAACGCATG
GCCCCGATCAACCGCATACACGAAATCAAGCAGGGAAGGCTCTAACTGACTAACCATCAC
GAAACACTTGCTCGACCAACCGTCCATGTTTCGAAAATTTCAGAGGTTCACAAGGCTCGC
AAGTAGAATCAGGAAACGGTGCTTACCAACAGGTCCCGAAGAGGGCGAGCTCGTCGCCTG
TGGGGTCTCCTTCAGCGCCCACCATGGCGGGTCGTACGGCCGGCAGTTGCGACGCTGCTG
CTCCTGCGACGAGCGGTGCTGGCCTTGGAAGCCGCCTCCGCCGTGGCCCTGGTGTCGACC
GTAAGAGCTGTCGCTGTCGGCCCTGCCGTGATTCCAGCCGCCTCCGCCGCGGTCCGCGAT
GCCACGGCCGCGATGCTGCTGTTGCTGCTGCGCGTGGTCGTCGTGCCCATGGGAGTGCGG
GCCCCGAGGTACATTCCTTGGACCTCGTCCGCTTGGCTCGAGGGGGACGCCTCCACCGCT
GGCCCCGTCGCCTCCGCCGCCCCCGCTGCTTCTCCTGCGGCTCTGGCTTCTGACAGGAGT
AAAACCGTCTTCGTCGGCGTCGGCAACCCCACCGCCGCCACCTCCTCCGTCGCGGCTGAG
GCTCACCTGGCCGCCGCCGCGGCCCCCGTATCCGCCGCCGCGCTGATTGGACATCTCCAC
GCGGAGGTCGGTCGAAGCAGCGACGGATTGATGGGGGAGGGTTTGGGATTTTGGAGGAAT
TTTTTCCCCTCTAGAATTTCGAATGGGGGAGGCGGTTGGGGGAACGGCGCTGGGCCCTAC
TTATATCAGGCGCGAGACTGAACGCGGGGGGGCGAGCGCGATGATTTTGAGAAGGGGAAA
TGACGTTTTTGCCTATAGCACGCCCGCGTTTCAGTTGGGGTGAGACAGGGGCACTATGGG
GAAATGAGCTACGTAGTACTCCCTCCGTCCTAAAATTCTTGTCTTAGACTTGTCTAGAAA
TGGATGTATCTAATTACTAAAACGTGACTAAATACATTCATATATAGACAAAACAACCCT
TTGTATTTGTTTCAAACAACCCTTTGTGACTTGTTTCGTTGGTTTCAAGTTTCATCACCA
ATTAACGAAATGGGAAGCGAGTTATATGGCACCCCTCTTTTATAAAAAATATTAAATAGT
TTATTCCACTTATTTAACATAAGTTGTCTAACATTTCAAAACCTATCTTGGGATTATTTG
GTAGAATTGTGATGATATATACATACCAAAATGTATTGTTTGTAGTGTATGCATTGCAAG
TGAATTGATGTGGATAATGATGAAACTCGGACCCACAAACAAAGCAAACGACTATCTATC
AAGGCACTTAGTTCTAGACATATACAAGGGTACCTAGGCCTAAAACAAATCTTTGCAAGC
AACCAGACATGTATCCGTGTCTAACCTTCTGAACAAAAAGATCAAACATAACCTCCAACA
AGACACAAATTAACTGGGTCGTCGTCAGCATGAGTAGCCTTTTTTCTTTGAAAGGGAGGT
TTGAACCCATGGCCACTACATCTAAGGATGTACATAATTATTTATATTATATTATTCAAC
ACAACCTCTCAAAACATATACATGGATCAGTCCATAGCCACCTTCCTAACGACCTATATC
GTACAAGCTTTGATGATGCGCATTGACCTTGCACCAACACGCGTCATCTAATACGATGGC
CTTATGAAGCCGCCCAACGGTAAGCCGTGAGCATCAACCGGTCAAGCAAACCCTCAGCAT
GCATCGCGTGCACATGCTCTAGAATCAGCTGCTGCCATCTTCCTTCGTCCTAGCTTCACG
AGGGATCAATTGTATTCACCTTGCTCGACCTTGCTGTCGGCAACGTCACCATGACGCTAG
ACAATGTCACCCTCCAGCTAGCATCTGTTCCAAATGATGCCTCCAAGAAGGAGAACAGCA
TCGAAGGCACCCTCATCGTTCGATTTGGGAGACCCAGATCTAGGGTTTCCCCGAGAGCAG
ACGGAACGATGTGACGATGATTGCAAACAATGTCTTCTAACAAGGAGATGACGTCCAAGA
CGACGCCAATGTCCCCCATGACCAACGTCGACGGATTTTTCACCGGCAATCGCACCACTC
CGAACTAGTCATTGATCGGATCCACGCTGAGCTACATCGTGACACCGTGCACAAACACCG
GAATGCCAACATGGAACCAGCATCCCTCGCTGACCCGTCTACACGTCGTGTGTCGTCCAC
CAGCCATACCGATAACATATGTGGGTGGGGACCACATCCACGGCATGTCGCCACCCATCA
TCGTCATAGAAGCACGTGAGCTCCCATGGGCCATGGAGGCGATCGTTCCCGTCACACGAC
CAGGGACGTCGCCATAACAGTTACGCATGATCTCCACACTGGACAAGCCCCATTTGCAAC
ACGGGAGAGCTCCACGTCTAGCGCCTAGTCCCCTTCGACATCGGGCCCGCCACCACCGCG
TGCTATGCTGGTGGTAGCGACAGAAGGGGCGACAATGATGGTAGGGTACTTCTGGCAGCT
CTAGAGTTAGCCTCCTTGGCGACGCCCTGGGGAGGCGGCTCGAGGGGGTATGGTAGGACT
CTCAATAAGAGATAATACCTCATGAGTGGCTTCTTGTAGGAAGATAAGACTTCACAATCT
CTTGCACACCCTCATCGATGATTTTTTTGAGATTGTTTCCTTTGGAAAATTCCAAAAAGC
CTCTGCTAACATGTATTCAACCTCTTCGAGCTACACATGAACGGGTGCTTCAAGCAAGGA
ACACGGTGTTGTGTAACTAAAGATGCTCGGGAACGCAACCACCAAGGTAGACGATGTCGG
TACTTGATGTAGTCAATGTCATGAAGTAACTCCTATAACTTATAAGTCCTCATGTCGTTA
GGGTCAATTGATGCTTTTATCTTTGAAGAACAAACCAAGGGAGCGAACCCCTACCGAGCT
AATGGGCAAAGTCGTCTGAGTTAACTCCATGCATTGTTCGATACCACGTACTCATCAACC
CTAGTTTTCTCCTACACCTCTTGAATCACCATCTCGACAAAACTAGATCCAAACTAGGAG
AACCATTCACACACTATGTCACTGTAGTCATTAGCTCAGACAAGCAACTGGGTCACTAAT
AAAAGGATCATGGTGTCACCTAGAGTGGGATGAATAGGCGTTTTATTTTTTTACGGATTT
GGATTTATCCTAATACAAAAGTAAGCTTAGGTGAATAATTTCATGAACAAATCCTAAATA
CTAGGCTCAACAAAGCGCACCAACAACTTTTAGCTAAACAAGATGAGAACAACGAGGACA
CTAGCAAGCGATAGTAGCAATACAAGCTTCCACAAGATACGAAAATGAACAATACAAGCT
AGCAAGTCACACTAGTCACAACATATATCAATAGTAGCAAGTAGGAATTGTGAAAAGTAA
AGGGGACAAGAGGCTACCGATATGTTCCCGAAGTTCAAGTATCCACCTACACTCTAGTCT
CCATCAGACGGATGCATGTTACCACGAAGGTGCGGCCTATTCTCCCCTTAAGATATGACA
ATAAAGACAATTCGCAATCAGTATTGTTAGTTTCTTCCTGCACTATGACGCGCTCCAAGA
CCACTTCATAATCATCACGATGGAGTAACTTGGGCCTCTTTACAATTCCACGAAAAGGTC
ACCAAGGAAACAACCACCAAAGCGTCTAGGAGGTGGTGGCCCCCAAGAGTAACAAGCCCA
CAAAACTCTCACTCGAACAAATTGGAGGGGAGAGCTCATAGTGATGCAACAAATGCAAAG
CGAGAACACAAGAATGCAAAAATCCCATCTCCCCCTCTCCCTCCCCTCCCCCTATCCCTC
TCCCTCACTCTCCCTCCC