Map Locations of contig_1564443 (4779 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1564443

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12937 6 1736 bp AK251725.1 Available Available None





CDS Structure of MLOC_12937






Contig Sequence (4779 bp)

>contig_1564443 4779 assembly3_WGSMorex_rbca.fasta
ACGTGGTCCGGCCAATAGCCGGCTGCCACGCGGCCGATTTGCTCCCGTCGGCTCCGATAT
AACCGAGTGGATCCAATCGGCCACCATTGTACCAACGCTGTAAAATAACTGATTTTTTTT
AAACCCGTGCCATAATTCTCTAATTTAATAAAAAAAGGTATTGTTTAAAAAAATAATAGC
GAAGTGGGTCAAGGTTCTGCTGAGCGACATGGCGAGATAATCATATCAAAAAGACCTCTC
CTTTCTACTCCCTCCATCTCATAATATAATGGGACGGAGGGAGTATCATTTTTCAGCTTG
AAGTACATAAATATTGCAACGGTGAGAATATTAAAAAGCATGACAAATATTTTGACAGCT
AGCGAGGATGTATGTTTTGAGTAAGGATCAGAACGAACAGGTTTGGGCTGCCTTATGTCG
TTCATATTTTGAAGGCTGATGATTTCATTACTGGTCCGATTTCATTACTGGTCTGATCTA
AGAGTGCAACAACATACCAGCATGATCGATGACTTCAGTGTACTTTCCCTTGCAGATTGT
GTCTACTGTATAACAAGTGTATAGCAGTATCATCGCTCAAGAGGCAAAGGATAATAACAC
AAGCATCTGTGAAATTTGCAGGAAAAAACACTCGAATCAACCGCACATCTGACCAGCGTA
GTACAACCATTGGGGCAAATAAAGGTTCCTACAGGTAGAATCGCTAGACTTCTACCATCA
ACGCACGCTCTTCGGCCTCCCAAAATATCCGCTGGGTTCCACCAAGAACTAGAGCCGGAG
ACGGAGACGGTCACGGCCTCACGGGCCTAGCAGCAGGGGCGGATCCTTCTTCCCGCTGGC
CGAATCGGAGTCCTCCGCCGAAGAAGGCCTCGGTGCGGCCCACGCACGGAGCGGCGGCTC
GAACATCTTCCCCGCGACGTCTGGCGGCGGCTGCTGCGGCTCATCCTCCCCGGGGAGCAC
CACCAGGCCCTTCTCCCTGAGAGACGACGGCTCGCCATAGCACTCCTTCCAGAGGGAGTC
CACCAGTTGCCGCTCCTCACGGGCTGCTTGGAGGTCGTCGGCGTCCATTGTGCTGATGCC
TTCGATTCGGCTCCTCAGGACGTCCTTCAGCTTGTCTTGGTCAGGTAGAGCGTTGAGGGC
AACTGGTGCCTTGTCACGCGCCAGCTCGAGGAGGCCACCTAGGGCAGCCTCTCGGACTCC
AGAATCTTCGCTGGATGCGAGGTGTATCAGTTGATTCGGAAGACCGATCTCTTCAGCGAC
GCTCCTATCCGCCTTGTTGTTCAGGAGGTACTGCGTGAGATGCAGCGCTTTCCTGTGATG
ATACAGACAGCAGAACTGTTATGGACATTCCAGGTGCATAATTCCAGTGGCAACAGAATT
TTCCAAGTCGAACAATCAGCAAAAGTAATACAAAAACACCAGTGTGAACAAACCATGCAA
GGATCGCTAGGTCAAGTTAACATGACTGCATATGTTGACAGGAAAATTTCAGTAGGAAAG
TTGGAAGACTACAAGAGATTTATCCTATATTGTAACAACTTAACATGTTTATTCACGGAG
CTAGAATTCTTGTGATATGCTAGTCGTTAGTTAAGTGTGAATGTAGAACACCTCTGAATA
GAGAACCTGGCTGCTCCCGTTCCACTGATGGTGGATATTATGACAATAGAAAGCCAGACT
ATCAGAAGAAAAGGGAATTATAGGTTGCATGATTTGCCTAGAAACAATTTCCTAGTGATC
CTCCTCTACAAACGTGCAAGCTGTTCCCGTATGTAATTTATCTTCCTCTGTAAATTATAA
TTTGTTGGATCGATACAGGGAGAATTCAGTACTGCTCTGGTGTATATTTGCTGTCCTAAC
GAACTCAACCAATTAAAAAACAAACTTATGCAATGGTGTGCTATAGGCCCATAGCTGTTC
TGAATACCCCACGACATACCTCTGAAGTCTAGCATCATCAGAACCAAGTGCATCTTTCAG
TGCAGCATGGCCATTTCCTAGACGAAATGCGGCAAGCCCAGGCTGATTATTACGAATCAG
AGCTGCAACACAAAGGTATGAAACCTATTAGAATGAATAACAAAAGAAACTACATGAAGT
TGACCCAGCGGTCCTTGCATATGATTGTTTTGGTCATATATGAAATGCAGAAATAAAAGA
AAACAAAAAATAGAAATAACTTACAAGAGATAGCTCCCAGAGCTTTTGTGCGTGCGGTCG
TGCTAGGATCAGACCTGAAGTTTGTCAGCAGTGGCTCAAGTCCATTAGATTCCATGACAA
GTTGCTGGCTTTTTGGGTTATTCTGGACAACCGTACTCACAACTTCTGCTGCCTTTGCTC
GGATGCCAGCATGTGAATTTTTTAAGTAACCAAGTAGAGGATCTAGTCCACCAATAGAAT
GAAGATCTGCTTGGACAATTCAAACATTTAACAGATTCCATATTGTTAGCCACACTAACT
GTTTAATAGCAGATAAATCATCATTTTGGTTTATCAATGATCTTACCATTTGCATTATCA
ATGGATTCCACATGCTCTTGTAACTCATCAAGCATATCTGGGCACAAAGTTAGAAAATGG
TTAGCTCAATGGACTTTAGCTTGCACATGCAAATCAGAATCGGATGCAAAAGGTACTTTT
AAACATATACTCCCTCCGTCTCAAATTAAGTGTCGTTGATCTAGTGCAATTTTTTTACTA
ATTTAGTACTAAATGTGCGACACTTATTTTGGAATGGAGGGAGTATATATGTACAAAGGG
TATGAAAGGAAAAGCAGGATCTGATCAAAATAATCATCATATGATGCATTTATAACTGAA
GTGAGAATGGAACAAATTCAGCAGCACACAAACAGAAAAACTTCATGTGCTGACGAATAT
CTACGTCACCCCACATGTTTATCAGGAAGTGTCAAGGAACGATGTTAACACTACTATCAG
ACAACAACAATTACTTCTGGTCTTCTGCCACATATTAGTTGTGTGAATTTCAATGCCGCA
AGGCACACAAATTGCACAATAAGGTACTCCCTCCGTCTCGGTGCATTAGGCATCTAATGA
AAATCAGATTTTCCCAAAACTAAGTCACGTAACCTTAATTGTTTGGTTGTTTCCCTTCCT
TACTTATTGGTCCTTCCCCATGCAGCCAGAAAAAATGAACAGCAATTGATCACTACCGTT
GATGGCTGCATGTGGCTAAGCCAATGCATGTACTTTTTGCTTGGTGCTCGTTGGGCATTC
TGGGCAGAAAAAGGGAGGGGAATAATAGTGCACGGATACCAATGCGTGCATGCACAGCTC
ACTGAGGAAGCGAAGGATCAAGCAATTAATTGGCGCGCTTGGCCAGATTACTTAGCAAGG
ATTATGGGCTAAACAGGCTGAGATGATTGGTTATTTTCACGGTTTGAATTTTTCCTTCGT
CCACTCACCTCACACCTTGGTTGCGCTGCACCTTCTAATGTGCCTAATGCACTGGTAGAG
AGGGAGTAAAAGAAATTGCATCACGAAGGGAGAAGAATGGCAAGCCAACTGCCTAAAAAT
CAGTGCAGGAATTACTGCCCATTGCCAATGTCAAGCCTATCCATTTTCACCTACCCATTC
ACAGTGTTTGCCGCAGCTCAGGCATGCAAATGCTATGAATTTAAACAAGTATCCTCAGCC
CTAGTTTTAAGCTCCAAGCATGAAATATTTGCTACTTGCATATTATAAAGCACATACTGG
CGCACAACAACCAGTCTCTACAGAGATGAGAATGCTCTCAGATCTGAACAATAGCATCCA
AACAGTCTGTGGGGTATAAAATTGCATGTCTAACAGAAAAACAGCTACAGGTAAACAACA
GAAGGAATGTGAAAGCATGATAAGGAACATGTAGGTTTGAGAATATGATAAAGAAAAAAC
AGGAACACCTGTGAAGGTACCTTCAATGTTCCCTGGAGTGACGCCATGAGACTGCAACAC
ATCATCAGGGGTTTTCATCACCTGGGCGATCTCCTTCATCCTGCCGACGACATCAATTGT
GTTGGCCTGCATCGCCTCCATAAACCATTTCCTGTCCTCCTCGCTGCAAATCAAAGATGG
GGGGAACTGTTAGCAAGACGAGTACTCGCCGCCCACTAAGAAATGTGTTCCAATCATTCT
GAACCCTGAAAAAAACGAACAGCTGCGACTAAGTTAATGAATCTTAGGTGATTGAACAGT
ACCTCGAATTCTAGAATCAAGCAAACAAATTAATTAATTGCTCAGTGACGGCTACTGCGG
CTTCATTTAGTTAATCATGAATTCATGATGCTACATCAGGATGAAAGAATCGCATCAATC
CAAATGGTAGTATAGAACAACATTCAAACAGGAAGCATGGAGACAATTTTAGCGAGCCGA
TACAGGTAGAGCATCATGATTCGTCATAGACAACACGCCCTGGTAGTAGTAGTAGTACAA
CTAACTGAACATCCCAACTGATACAGACTAGAACACAGCAGTAACTCTAGCCTTAAAAAC
TGAATCCCTCCCAATTGACACATGGCCTTAACCAAAACCTAGAACGGGTAACTCTATATA
TCCTTGCTTAAGATCCGAAAACCCGCACCAGATTCATCCCCGGAATCTGAACGGGGACCG
AGGAACGAAGCTGAGCGGGCAGCTAACTATGTACGAGGAGCACGGGGGGGGGGGGGGGGG
GGGGGGGGGTCGAGGGGGGGGGGGGGCCGTGAGCGGCGGGGGGCTGAGGCGGAGCTCGAC
ATTGCTGGGTCGCGGCCCCGAACGGCGTTGCTGCCCGTC