Contig Data
morexGenes
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Map Locations of contig_1564405 (5522 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1564405

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12926 4 2115 bp MLOC_12926.1 Available Available LOC_Os08g29650.1, FRAME:+3, EVALUE:2e-39, 13108.m03063 protein RNA recognition motif containing protein, expressed
MLOC_12927 1 1817 bp MLOC_12927.1 Available Available None





CDS Structure of MLOC_12926






CDS Structure of MLOC_12927






Contig Sequence (5522 bp)

>contig_1564405 5522 assembly3_WGSMorex_rbca.fasta
TTTATTTCGTTTGAATTTGAACTTGTTTGCCAAACCCTATGTCAAATGCGAGATTTGAAG
TTTTCTGTTTGTGGGTCGTCGCGGTGGAGCCCGAACAGAACCCGCATACGCCGACCCGTA
AAAAAACATATTTCATAAATATATATTTTTATACGGGTCTGTTTGGGAAGTGTACATCTA
TGTCACCCCACGCCGGCCTGAAAAAATGGTTTTGCGCTAGAGTTAGCTCTAAGGGCCAAC
CCCCAAACCTCCGGCTGCCACCTCGCGCTCCCCCCTTCCAGAGCGAGAGAGAGAGAGAGC
TAGGGTTCCGCTCTCCCATCCCCATCCCCATCCCCATCCCCGCAGCCGTCGCCTCCTCTC
CTCTCCCCGCGGCCCCCGAACGCCGGCCACCGGCGAGATCCGACCGACCGACGGCTGGTA
AGCGAATCTCGCCGCCTCGTCCTCGTTCCAATCCGCGCTATTGCTCTTCGATTTCGATGC
CACACTGGACTAGATCTCAAACTCAGACCCCCCCTCCCCGTTCCAACTAGTCCGTTTAAT
TTTATTTTTATTTCATTTAATGGTTGCCTCCGTTGAATTCGCCATCCAGATTAGCTCATC
TTGTTTTTCCATCTACCATATATACATACGATTTATTTTATATATAATCTGTCTAAGCTT
TGCTCGCCCATCTTTACTTGATAATATCCATCCATCATATAATCTGCCTGTGCTTTGCTT
GCTATCTTATCTGCCTTTGGCCTCGCCTGACTGCTTGCCATGTCATGTGCTTAACTACAC
TCTTGTTCTTGTTTGATTTCAGCTTAAGCTTGAGACATGTCGCATTCCAACCAAGTGAGG
TCAGTCCTCTTCACTTATTACCTTCTTCTTCCCTAATAACACACTTCCACTTTTTTCTCT
TGTCACTTCGCTGCTCTATATTGTACAAAACCTTGTCTTTGTTCTTCAGGTACACCGCGC
GCTCCATCACGCCCCCGGCCGACAGGGACAGCGGCTCCAAGTCGCCCCCGCCCAGGAGGC
GCGCCGCTTCCAAGTCCCCTCCCCTGCCACCTCCTCCCCCTTTTCCTCCCAAGGGGGTGC
GCACCATCTCCAGCTCCCCTCCGCCAACAAGACGCACCGTCTCAAGGTCCCCTCCACCAA
AGAGGCGCGCCAGGTCAAGGTCAAGGTCCAGATCCAGGTCCAGGAACAGGAACAGGAGCA
GGAGCCGCTCCAGGCAAGTCATACACAGGCTTGATGTTTATTTCTTTCTACCACACACCA
TGCATGTGTTCATTTTCCTAGCACTAGCAATGATGGATACTGCTGCTTCCAATGATGTAT
TACAGTATGTATATAGCCGGTCAGAAACACTAGTTAGTTATCACAAAGATACTGCTATTG
ATATCGCTTCTCCTACTATCTATGTTTGTTTCAGGAGCAGAGATAAAGACCAAGTCAGGA
ATCCTGGGAACAACCTCTATGTCACTGGACTGTCCATACGGACACAAGAAACTGACCTGG
AGAAGTTCTTCAGTAAAGAGGGCAAGGTACTCTCTCCGCGCCCTACTTCCTTCCTTCTTG
CCTCATGTCTCTCATACTTCTCCTTACCTGGGACGGGACTGCTTGTTCATTGCGTGATTA
TTGTTTAATTTAACTAACTAATGCACGACGTGACCAAACTGCATGCAGGTTAAAGACTGC
CGTGTCGTTACGGACCCTCGTACCAAGGAATCACGTGGCTTTGCGTTTGTCACCATGGAG
AATGTTGAGGATGCAAGGCGCTGCATCAAGTACTTGCACCACACTGTACTTGAAGGCCGC
CTCATCAGTGTGGCAAAGGTATAACAAGCTTTTCTGCGTGTAACAGCCTTGATGCTAACT
TGCGTTACACAACCATATTCTTCTTTGCATACCCGTTTATGCTACTTCTCGTTACCAGGC
AGTCATAGCGTATGTGTAAGCTCGCATGACCATCTCGACTTACATTTTAGCTCTCCTACC
CCCAACTTTCTGGGCCAACTTTATCTGACTGGGAATAAGCCACACATCCTTAGGACGTAG
TTTACAAGTTAAGAGCTCAATAGTTCCATTATACCAGAATGAGGCCATTACCGAACTTCC
TTATGACGCTTTCTAGTCTTCATCAAAACCTTGACCAATTAATATGGTTATAAACTCGGC
TCTGGTATCCGTATGAGCAGTAGGGTAGAGTAAATTGATTCTTAGAAACACCAACGCAAA
CACAACCATCTTCTTCTTTCCATATCCGTCTGAGCAGTAAGGTAGTTCTTGTTACATTTT
AGCTTTTCTACTGACAAATTTTTGGTCAACTTTATCTGGAAATAAGTCACACACCCTAGG
ACATAGTTTACAAGTTACTATCTATTGATTTCAGTACCATAATGAGGCCATTACAGGCCT
ATTTTATGTCGGTATCTAGTCTACCTTGGACATTTTGTTTTGTACATATCAAAACCATTA
CCAGTTTTGTATCTAACATATTGTTTCAACTTTTAAGTGTCCTGAAAATCAGACAGAGTA
TGAGTAATTCTTTTAAACAATGTTTTATCGGCTCATTGCTCTGGTGCATTGTCTATGCAT
ATATATTGGGGTGTCCTAAATGATTTGATTCATCGGGAGAGAATTGTTTAGTTATGCTCG
TTAACATTTTCAGTGTAGGAAATGAAAAAGTACATCTTGTTTCTGTGTTCTTTTGCTTTT
TTTTGTGTGTGTGCTGATTTCCACGACCATACAGCTTCCACACTGCTGGGCTAGCATTAA
TTCCAGTCAGTGTTCTGTGTAGAATTATTGAACTAAATGCTGGCTGCACCCACCTGTTGG
TTTGTACAACCTCTTCTTCAACCTTACAATCTGTTGCCTCTCGAATCTCCATCACCCTCA
CGAACATCGCCATCACGCTTGTGATCATCGCCATCACCCTCGCGATCATCGCCTACTGCG
CTGTCTGCACCGACTTCGAGTGATTTGACGGCTCGGAATGCTGCACTGCTACGCGTCACC
ACCGGCTGACCGAGCACCTCAAGTCATGCTGGTGATCTTGGGAGTGAGAGCACGGCTCTC
AAACGCTGCACTGCTACGCGTCGCCACCGACTGACCGAGCACCTCAAGTCATGCTGGTGA
TCTTGGAGCGAGAGCACGGCTCTCAAGGCTGCACTGCTACGCGTCACCACCGACTGACCG
GGCGCCTTGAGCCATTCTGGTGATCCTGGAGAGAGAGCGCGGCTCTCAAGGCTGCACTGC
TACGCATCACCACCGACCGACCGCGCACCTCAAGCCATTCTGGTGATCCTGGAGTGAGAG
CATGGCTCTCAACGCTGCACCGCTAAGCGTCACCACCGTAGACCTCCTCGTGTTGCGTGT
AGCTACTGTGGTACGTGGTACTACATTCTTGGAGCTACTGTGGTAAGTGTAGCTGGTGTT
GGATGGCTTCAGCGCGTCTTCCGTCAGGACCAATTTGATGCCTAATTTCATTTGTTGCCT
CGAGTAATTTTTTTTTAATGCAGAATGATTATGATCCATTCATTCGAATTCCTATTCGCT
GCTGACCTTTTGAATTGCAGGCAAGGAGAACTCGTGAGAGGACCCCAACTCCTGGAGAAT
ACTGTGGTCCAAGAGGTATGCACGGAGACGAATTTTTCTTCCTGCAGTTGCATTTGAAAT
AGATGCTTTGCTTCCTGTTGTTGATATTGTTTCAGTACGTTGTCTGATCTGTCTCGTAGC
CTGAATTTCTTGTACTTGTCTGATCTGTTTCACTAGGTTGATATCATTTGGCGCAGCTTG
TTATTATACGGTTGACTTTAGCCAACACGATGGGTGTGTATTTTTTAATTCTCCAGTGGT
GTCGTCTTAGATTAATTTACAGCATTGTTACTCTTGGTTCACCGGAACACTTTTCCAGTC
ACCAGAGATTTTAGTATGAACATTGCATTACCATTTATGGCCCCCTTTCCTTGTTTTTCG
CTGGAGAATTAGTCTCCTGGAAAGGATGAGGGGATAGAAAGATCGGAAGGTATAGGTTGT
GGTGTCTAGCAATAAGATAAGATGATGTGTAATGTGGTTCAAGGGGTATGCATGGAAATG
AATTTTGTTTTCTGCATTTGCATGTGGTCTAGGATGCTTTCCATCCTGTTGGTGATATAT
TTTGTGTAGGTTGCTGATCTGTCTTGTAGCATGGGATTCTTGTACTTTACATACATGGTT
TTGCTCAGATTCTTAGCATCTGGGTTTGCTTATTGTGCAATTACCTGTGGCCACTAGCCA
GCACGACTGGCCGTGGATCTTTTATAATGTCCACTTGCGTCATCATTGTAGATCCATTCA
CAGGATTGGTACTCTTGCCTTATATACACTCTTGACATTAGTTGGCCGCAGAAGAGTGGT
CTTTTTGGTTTGTACTGTCCAGGTGTTGCCTAATCAGGATTTGTTGACATGCATGCAGGT
GGGCGCTCCCGAGTGGAACCGCGGAGCCGTTCTCCATCTCGTCGGTCTAGCAGGTCGTCG
AGGGACCGCTCGAGGTCCCCGGCCGGAAGGAGGGACAGAGACAGAGACAGAAATAGCAGG
GACAGGAAGCGCGACTGAAACAGAAAGACTATGTATCGCCTGGAGTTGTCGAGTATGAAG
GTGTCTTGGATTGTTGGTGAATGTTTGAGATGAAGAAAGACTATGTATGCATGATGCACC
TTGGTCTGTATTTCTGCTGGACTATGGGGATGAGCCGATTTGTCTTGCCTGCCAGAGAGG
ATTCGCCTAACGTTTTCTAGCTTGTGTAGCGTTATCTTGTGTGGTTATGTCTAAGTTGTA
CTTTGGTCTTTCCCGTTATCGAAACGAAAACGAAACGTACTCATCTATTTTGTACTCCCT
CTAACAAGAAATATAAGAGCAATCCCTTCCCTTATATTTCTTTACCAAGGGAGTACTATG
GACAGTCTTGCATGCCTTTTCTGGTTTCTTTGCGTGGCTGGATGTTATATTTATGTACTC
CTTCCATTCCAAAATTCTTGTCTTAGATTTGTCTATATATGAATGTATCTAGTCACATTT
TAGTATGTAGATGCATCTAGGGATACCAAAGTTTCGCTCCCATCTCACATGTTTCTTAGT
GTAGCATGATGAAAAGAGATGATGTAGAAACAGTTTCCATTTCTTTAGATGACATATAAT
AAGTCGTGATGTATCTCATTCCTCTCTCATCGTCGTCCTCTCCAATTGCCGTCTTATCTC
CCTACTACTAGTTGATTTTGTCGATCGTTGATAATGTATGCAGGCAGCCAAACCTTTAGG
GCGTGTTTGGCAGCTGTTTTTACTCTAGTATAGTTGTTCCATGTTGATGCTTGCTTAGTA
TAGACATGATGAATACATACATCTTCAGTTGTTTGGTGATCATGTATGTATTAAGACATG
TTTGGATGAGACTGTGTTTGGTAGGAAGAGGGAGGAGGAAGAGGTGCACTGCGAGGGAGG
AAAAGGAGGGAGGTGCACTGCGAGGGAGGAAAAGGAGGGAGGTGAAGGAACGGGGGGGGG
GG