morexGenes - Barley RNA-seq Database

Contig contig_1564351
Source Contig contig_1564351
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564351 (6720 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1564351

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12906	3	1770 bp	MLOC_12906.1	Available	Available	LOC_Os10g40730.1, FRAME:+1, EVALUE:2e-170, 13110.m03776 protein expansin precursor, putative, expressed
CDS Structure of MLOC_12906

Contig Sequence (6720 bp)

>contig_1564351 6720 assembly3_WGSMorex_rbca.fasta
TAGGAATTTTCTTTGTTTCCCATGCAACGTTCCCCAACATTACTAGGGACGGTGTTTTGT
CTATNNNNNNNCACATATATTTGAGTTTCCAATCAATGCAATTATAATGTGGATAATAAA
CGATTATCACGAACAAAGAAATATAATAACAACTAANNNNNNATTGCCTCTAGGGCATAT
TTCCAGCGACATCTAGCCTGGAGACTAGATGGAAGGATGACCAACGCATTTTGGGCCGGT
TTGTGTGTAGGACGGCTCAAAGGATCATGGCTGATGTCGGCTTTGTAGATGTCGACTTAG
GAGTTCCACTCCGATGAGGAGAGGTCGGGTGCAACTCCGATTCATTGTAACCCCACAGGT
TTGACTCAATATATAAGGGTAAACACCGATACATCTAAGGGACAGACCCAGGTTAGATCT
CTCAAGAGATAGGTAGCGAAAGCAACCCTTGTAATCAAGATCTTAACATAAATAAACAAA
CATAGGGCAAGAGTAGGCCTTTACCTCACGAGAGGGGTCGAACCTGGGTAACTTGTCTCT
CTCGCTCCGATCATTCCCATCCAAGGATTCGCCTAGTGGCTATGGCCTCACAACAAAGTT
CTCTCATGAGGACACTTGTCGCGGTAACTCCACGATAGGTGCATCCTCCCTTCCTTCTTC
CTCGGCCCTTCTCTCCATGGTGGTGGCCCGCAATGGAGGTATGGTGGGTGTAGATGAAAC
TTGTGAAGGTTGAAGATGGATTGAGACGGCGGCTAGGGTTGGAGGTCTTCTTATAAGAGG
TCTCCCCGAGTGTCCTCCATTTATCTAGACTCCTCCCTTTCATCCAAGGGCTCAAGGGGA
TCCAAATCCACGGCCAATACAAGTGTTGGTCGCCAAGAATCCCATAGGAAAAAGGGGACG
AAATGAGAGCAAGGTTTGGAAAGTTCTGGACAATTTTTGTGGTTGTCTCGATCTCAAACG
ACCACCCAAACGACCTGCTCCGGTGGACTGCTTGAGAAAAGCCCCATGCGTCGGTGGCCT
TGGATCTTCATTTTGGACATTTTGATAAATGTAAAATCATCGAACACACCAAAGGGCCTT
GATCTCGGCCTCGAACTTCTCCGGTTTGACCCAACTTGATTTTTTTATGTCCCAAGTCCA
CGACCATGTCCACACACCTTCAAATACCACAAAATGAAGTAAAACTAATAAGAACTAAAT
AAAAATTAAAAAGTGTGCAACGAACTTGGTAAAACAATTAAATACTCAAAGCTATGTATT
GAAGACATGAATAAATGCTGGATGGGTATGATATGAGAGATTTTGGCACTAGAATATACT
CTAAAGATATACATAAAATCGAGTCATCAACAACCAAAAGGCCGGCTTTGCAGAACTTGC
CGGTTTGTTGCGACATGATAGAATTGGTGTTTAGGATGATTACAAGCTATCCATAACTTT
GAAACAAAAAGGGACTCTACCCAAAAGCGAGAACTACTAGGTAAACCATTTCCCCAATAC
TCCCTCAAGTTTATTTTTAAAACATAAAGGTAACCAATTACTAGGTAAACCAATTTCCCA
GTACTCCCCCAAGTTTATTTTCAAAACATAAAGGTAACCCTACGAGTGGGGCATTTTGGT
GGAGCCTGGATTTTAAAATACAAATCAAAATTCAAGCTTTTCGGTTTTGAAAATAACTAA
AAAATATATGCAAGTATACAAGGATGAATATATATGTGCGTAAAAATTTAGAATGAAATA
CCTTGAAATGTAACATGTACAAAAGAAAAACAAATTCATTAATTTTGAGGCCGAAGAATA
TCATGTGCTGGAAAGCCTCAAATTTGTTTATTTTACACATCCTTCATTTTAACGTATTTT
GTCCTAAAAATTTACACACATGTACATCATGATTTCTATATATCTACATATACATATTTT
TAAAATTAAAAGCATAGAAATATGAATTTTGATAAATTTAGAAAATTACAAATGGAGACA
TTCATGGAGCTAAGCCTTCAAAAGCAATTTTCGTAACCTTACGGATAAGGTTATAAGCTC
AAAAGAAATGACCTTCCGTGACACATGGTGTTTTTATTTACCCTGAAACCCTGAATGAAT
TCTGAACCCAGATCAATTGGGCCGTTTACCCTGAAACCCTGAATGAATTCTGAACCCAGA
TCAATTGGGCCGATTTGGCACGATGGCACATGCCGACATTTCAGTTCCACCATGCATGCA
TCTCGAGTCCCGTTTGCGTTGTGTTTATGCGTTTCCTTCAGTGATCCGAGGCTGAGAGGG
GCCTGAGCTAAGCAGACCATGGCAGGCCGCTAGCCATCCTCCTCCTATCTACCCGTCCCA
ACTATCATCTGCCACCTTTAATTCGCGGTGCCGTAACACGATGCGGCTGCACTGCATGCC
CCGAGCCAGGCCATGTGCCGCCCAACATGGCACGTTCCCTGCTCTGCTCTCCCCTGCCTA
GACGCTCACACACAAACCCGAACCAACCCCATCCCGTTGCCTTGCCTAATGCCTAGCACC
AGCGGCCGCGCGTACCCCCGATCCGGTTTATAAATAGCCCCACCGCACCACGGCCACCTC
CCCACTCCCACACAGGAACCATCACTCCGCACTGCCCACTCGTCAGATCCGCACACACAC
ACACACACCACAGCGCGCGGCATGGGCTCCCTCCCCTCCCTCGCCGTGCTCGCGGCGCTT
CTCTGCTTCCTGGCCGTCGGCGGCGCCGTGGACCTTAACGCCACCGACGCCTCCCCCTTC
GACGTCGACCTCAACGTCACCGACGCCACCAAGTACTGGGGCCCCTGGACCCCGGCCAGG
GCGACCTGGTATGGCCAGCCCAATGGCGCCGGCCCCGACGACAACGGTGAGGATCCTCCG
CGCCGGCTCCCTCTCAGGACGAATGCTTCTCCTCTCCTCTCTTCTTGCGCGAGCAATGTG
GCTCATTTCTTTCTCGGCGATTCTTGGCCTTGCTAGGTGGTGCCTGCGGCTTCAAGCACA
CCAACCAGTACCCGTTCGCGTCCATGACCTCCTGCGGCAACCAGCCATTGTTCAAGGACG
GCAAGGGATGCGGCTCATGCTACAAGGTACAGTAGTAAATTAAAATTAAATACCCTCCCT
CCTACGATGAGAAACAGTTTACAGTTACTGTCAAGCCAGGCCGATCTGCAGCGTCTCACA
GCGGGCCCCGCACGCGTGGGGGGTGGCCGTGTGTGTTGAGTCGCTATCCGTGAAAACTTC
TGTTACTGTGCGGCGAAGAGCCGTTGCAGCTATGGGAAGCACATTGATTGGCGCTGGACC
TCGTTGGTGGCTCAAAGCCTGGCGTTTTGTTCTGTTTCAGATCAGATGCAGGAAGGACCA
ATCCTGCTCCGGCAGGACGGAGACGGTGATCATCACCGACATGAACTACTACCCGGTGGC
GCCCTACCACTTCGACCTCAGCGGCACGGCGTTCGGCAGGCTCGCAAAGCCCGGGCTCAA
CGACAGGCTCCGCCACTCCGGCATCATCGACATCGAGTTCACACGGTAAGAGCCAGCAAC
ACCTGCAGCCAGCGCCGTAGCAGTACCAGCGCAACACTGAGAATTTGTACCACCATTTTT
GCAAATTCCTGGTTGAATTTCCTGGCCATCGTCGGGGCAGTTAAGCTAAAAGCTGAAAAT
GGTTGGGTGCATTGGATCCACCCAGCTGCCGCATTACTCCTGGCCGACCGGACACGGGCG
CCACACACACACTCCTCTGCTCTGCACATGCATGTGCAACAGCTAGTAAGCACACAAGGC
AGAGCTCACTCAGCTTTATTACTCGGGCCCAACCCACCTCCTTTTGCAGCACGGCATATG
CGTGCCCTGCCACCATACGCCACCGGCCAAGCCCATTTCCGTCTCGTAGGTAGTAGGAGT
GTCCGTATTACAGAGCGGCTGGGGCCCCCGGTCGAAAGATACAATATTCCCCAGCAAGCA
AGATGGAGCAAAGCAACAAAACTAAGCACTCCATAGTCCATTTATGCAAGGATTTACAAG
CAGGGTGCGCGTATTTGCAGGGTGCCGTGCGAGTTCCCGGGGCTCAAGATCGGGTTCCAC
GTGGAGGAGTACTCGAACCCCGTCTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGAC
GGCGACGTGGTGCAGGTGGACCTCATGGAGTCGCGGGGGCCGGGCGGCGGAAAGTGGACG
AGGATGAGGGAGTCGTGGGGCTCCGTCTGGCGCCTCGACTCCAACCACCGCCTCCAGGCG
CCATTCTCCATCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAACAAGGTCATC
CCGGCCAACTGGAGGCCCAACACCTTCTACCGCTCCTTCGTGCAGTACAGCTGAAGTCCC
TTTACCCGAGTACTGGTAATGCTACTACGCAGCTAGCTGCTACGGTCAAGTCATTGGGAG
TGTACGGTCCGTCCTTGCGTCGCGCTGAGTCGTTGTAAACTGTATCTGGTTGGGTGGGTG
TGTGGTGTCGGTGCGTCTTTCTAGGTGAGAAAAAGGTTTGGTTGGGTGCGGGTGCGGGTG
CGGGTGCGTCCGTGGAGTCGGGTCTCGGTCTGTAGGGAAGTGAGAGATGAGTCGTGTATT
GGCAAATGGGAAAAGGGCTGTGTGGGAAAATGGAGGAGGCAGGCGTACAAGATACGCTCT
CCCGCCCACTCTCGCCTTTTATAATTTATATAGTATCATTCAAGGCGGTGATATTAATCG
AAAGTATATTGTTACTACTACTACTACTATATGAAACCAAACCATGTTTGTAGTACTTGT
GCCTCTTTTTACGCACTCCAAGTTTCTTTTGGTCACCATTTATTCTTATTCTTGAAGAAG
CAAACCCAACTGCACAAAAGCATAAAAATGGTTCTTCAGCAAATGAATTTAATTTCATCA
CATCCTACCACTACATAATCTCATGTTTGGCGCCGATCGGTTCCCGCGCGCGGTAAATTT
ACAAACCTGGCGCGAAGAACGGGCGGCCTTTACCCGCTTCTTTTTCTGCAGATTCCCTGC
CTAACGAACGGCCTAGCACATGATTGGTTGCCGGTAAAGCACGCGGCCGAATTATCCAAT
CTCCCTGCTGGGCGCTGGCTGCGACCTTCGATAAAGCCACTGCTACCACTCCCCACCGTA
GATTTTCTTCATGCCATCAGCACGGTCCTGCCAATTCGATGCGTACGAGCAGTAGTACGT
AGCTCGGTAGCTGTAGCGACCTTGGCAGCCGGAGAGAAATTCCCCGGGCCGGCTCCGGTC
AAACAGAACAGTGCGCGGCACGCAGGGATACAAGCGCGTCCGGCCAAAAGGAAGCATCCC
ATCTTCCGCCGCCCGCCGGGGTCCGGCCTTTCAAATCCCATTAGCTGTCCCGCGTTGCTC
GCCGCTGCCCGCTGGCGATACCCTCCCTCTCCCTGCACGAGTTATTATCGTGGCTCCCTC
GTTTGGTCCAGATCCCCAGCACGGCACGGCATCTTCTTATTCTCATCTCGTCTTACATTA
CATGGCCCAGCTTCAGCTCACTGCCGCCGGAGTTCAGGTTCGGCACCGCAGGCGAGCCAG
GAGCAACTCCTGTTCCTTGCTGCCGCGTCAATCGATCCAGCAGGTTCACTAACGTGAAAT
CGTGATCAAGGACGTCAGACCGAATCACATAAGCTGGCGCTCTGGGACTTGGCCGGCCGA
CACCGGTCTTCTTTTGGACGCGCCTTTTCTCCTCTTTGCATCCGCGGATGGAGCTGGTTT
CCCCGCGGTCCGCGGCATGTGCGCGCGGCGCATGGAGTCAAAAGGCCATGTGTACCCTGT
ACTGCTACGTACCTTGCAGACCCCGACCGGTACGGCGTCGTCTTTACCAGTTGTGTGTGT
GATCCGCCTAAGCATGTGTGTCGGTGAACCGAATTCCATTATCGTCTCCTGCCCGGACTG
GCCGGCACGCGCCGGAGCATATCATCATTATCACTGTTGAAGCGAAGCGGGGGTGCTCCC
ACACACAGTGCCACCGCATGGTGCGGACGAGCGGTCCAGCGAGATGCCAAGAGAGCAAGC
TATCACGTCACACCACGCAGGAAAATATCTCTGCCGCATACGCAAAATCTGCAAATGCGT
CTGCATGGAGGCCGATGGCGTTCGGGAGTAGTAGTAAAAAACATCCGATCAGCGCCGAGT
GGTTGGCGACGGTGGCGGGTTAGGCTGCGCAATGATTGACTTAGCCGAGCTGAGCTGAGC
TGCCTCCAACTCCGACGGTACATTCATTTGCCGGCGGTCTACGAGGGCCCACCGGTCAGT
CAGCGAGATTAGGAGACACAAACAGCACAGCGGAAAGTCAGATGAGGATTATCTTGTGTA
TAGAGAGAAAGGGATTGTCACTACCATCGTTGATGTATTGATATGTGTCGAGGTGCGCGT
ATATAAAGAGCACAAATGGCTCTGTGGGCCTTTACCTTAACTATACACATCTAAGGGGTG
GGTCAGGATATACGTAATATACATGCAACACATATATTCAACACCCGCCCTGCAGTCGAA
GCGTCGTCGGAGAGAGAAAGACTGAACCGAAACTCCTTAAAGATGGGAGTGGGCAATTCC
TTAGTCATGACATCAGCAAACTATTGCGACGTCGACACGTGTAGAACTCGATGTTGGGGA
ACGTCGCATGGNAAACAAAAAAATTTCTACGCGCACGCGTAATAACTTCGTAAGCATACA