Contig Data
morexGenes
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Map Locations of contig_1564336 (5268 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1564336

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12899 1 472 bp MLOC_12899.1 Available Available None
MLOC_12900 6 1366 bp AK356660 Available Available None





CDS Structure of MLOC_12899






CDS Structure of MLOC_12900






Contig Sequence (5268 bp)

>contig_1564336 5268 assembly3_WGSMorex_rbca.fasta
AAAACAACGCCATGGCAATTCTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
TCATGCAAGTTAGAATCCAAAACAAGGACAAAAGAGTTTGGAAAATTAGATACGTTGGAG
ACGTATTAGTCCCCAATGCAAAAATTCCGCTCGGGCAATCGAGGAGGTCGAAAAAACGCG
TCCAGACAACCCTAGAAGGCCAAAAATCGCCTCCTGAGAGACACAATGGCTGGAGATGCT
CTTAAGGGCAAAACTCATGTTTGTAATAAGAACAAACCGAAATGGCACTAATTTGTCAAA
AAAAGTTGCAATAATATTAGATACGAACAAAAGTGATGGCCAACGCACGAATCCATTGAC
AAAACAGTCCGCTTGGCGTCCGCACCGACCCTTTTTGGCTTAAATTTGGGACTGAAGTGC
ATCGTTGCAGACACGAAGCGGACACGAAGCGGACACGCGTGGGCCTTCTCGGTGTCCGCA
TGTGGCTAACCTGGCTTGCTTATTTAATTTTTTTTCTTCACCCATCCATCTCTCTCGTAT
TGTTTTAATACCATAGTGCTGTTGTCCACTTGCTTCCGGTTGAATCCACTTAAAAACAAA
CATGAACAGACGGACAGACAAACTAAAAGAACAAAAAAGACAAAAATAATGTCCGTTTGA
ATCGCTACATTGAAGTTGCTTTCAGCTACGAGTGGAAGGGAATTTTATGTTTTGACCTAA
ACTCAAAAGAAAATCTAGATTTGACCTCTGTTTAAAAAAAACAGATCTAACCTATTTAGG
TGCACCAACGTCCATGGCGTTCGGATTGCACGGGAGACGTCAGAGACCATGGCGTCTGGC
CCTCCTGACCACACACACAGACGTCATGGACCCAAACGTCGGGGGTCCTGACGCCATGGT
TCCTGGGGTCTCCCGTGCAACCCAGATGCTAGGGACGTTGGCGTCACGTAAAAGAGATTA
GATATCATGTTTTTTTTTTCAAATAGAGGTCAAATCTATTTTTTCTTTGTGCAAAAGGTC
AAAACACAAAAATTTACCATGAGTGGTACCATGAGAGAATCAAGAGAACAAACGAAGAAA
CAAATTAAAAAGTTTGCGCATCATCCTCCAGAACTTGCCGACCGTGAGTCAGATCCGCAC
AGAGTAGGGAGTACTAGGTACTGCATCCCCCGACAGAAGGTTTGGTCACGGCGCGCCGCG
CATCTACGCTGCCGCGGGCGCGCCGATATCCCCATCTTCCCTCCTAGCACGACTCGCCGT
GGCCCGTCGACGGCCTCTGTTTCTTCTTCCTGCCGCCTATGCTCGTGTCTTCCTGCGTCG
TCGTCCATGGCGCCTCCTCCCGTCGCCTCCAATCACCTCCCTTGGAACCTGACCCCGGAC
GACAGGCCCTTGGCGGCATGCCGCAGCCCATCGCCGACGAACACCGCTTGTTGGCACCCT
TGTTACACGACGGCCGTGCTTGCGCAAACGTAGGTCGAGGGGTACAGGACGGACTCGGGG
CCTGGACCCGGTGGCCCATAGGAGGCGCACCGCCGAACCCGCCGGCGACGAGGTCGGCCT
GGAACATGTCCACGAACAGCTGCTGCAGCTCCTCGAAGCTCTCCTGCAAAAATTACATGG
TCAATAATCCACGCCGCAATTTCAGAATGTGCTCATGGGGCTTTAGCCAGCAGAATTATG
GCTTACGGTCGGCGTGGCCTGGCTCATCATCTCGGCCATCTCCCCGAAGAAGTCGCCCAT
GCCAGACACCTGCGACGAACGGATTCCAGTAAATAAACAACCAAATTGGGTTCGATCACA
ACGAAACGTGGGTGATCACTGATCAGGAGCATAGCAGGGCACGCACATCCTGCTCGTCGC
GGCTGTCATCGTCGGTGTCATAGACGCCGACGTCGTAGAGGAGCCGCTTGCCGGCGTCGG
AGAGCACTGCGTGCGCAACATGGAAAAACAGAGGAGGCCCCGTGACACATGAGTTTTACG
TCCGCAGGCGCGTAGCAGCAAGATCCGCTACGCCGCCATGGAAATACAGCAATTCAGTTG
TGCTGTGCGCTTCTGACGGAAATTAAGCACGTAGGAGCAGAAAGGAAGAAGATAGTGAGA
TGGAGAGATCATGACCGGAGTATGCGCTCTGGATCTCCTGGAACCGCTCCTTGACCTCCT
CCACGCGCGCCGAGCTGCCGGACGCCGAGCACCGGTCCGGATGCCATGTCTGCCAGCCAC
AACAAGATCCAGGAGAACGATGAGTACAGATTCACATGTACGTACGTACGTCGACTCCAA
GCCAAGGTATGCGACCCATCGGTCGACGACGACGAGGGCTCACCATGGCGAGCCTCCGGT
AGGCGAGCCTGAGGTCGGCGTCGGAGCACTCCTTCTTGAGCCCCAGGACGGCGTAGAGGT
CGACGTCGGCGCCGCCCAGTCGCCGTTGCCGGTGGTCGGCCATGGCGCCGGTACCACCGC
CTCCTTTACGTACGGTCGCTGTCGAGCTCGTCGCCGGTACGTTGTCGGCAGCTGGCCGGA
GGCGCGGGAAGGCGAATGCCGTATGCTGGTAAGGTGGCGCAGGAACGAACGTTCACGAGC
GGACGAGGTGGGCCGGTGTCGTGTCTGTAATAACTCTCTTTCTGTACTGTGGCGTGCGAG
CAAGTTGCGCGGGTAGAAGGTGCGAGAAAAGAAGAAGCTTGTGGTGGTCTCGTGGACCGG
TGGGGTCTCCACCCGCCGCCGGAAGCCTCCAGAAGCGGAGGCCGAGGCTGAGGTCGACGG
CGGGCTGACTTGCTTTTTTTTTTATACAGTAGTAAAGAAAGAGGGGGAATAATTTCTTCA
TATAAAACCCGCAAGGGGATGCGTACCAAAGTAGAAAGTTGCCGTAAATTGACACAACCC
AGATGAGGAACGTGACTATGTTGGAGTAGTCGACCAAACCATTGAGTGATTTTCTTTTGC
AAGTTGCCAAACCAATGAGTATACAAAGTTTCCTTTGGGGTTCCGCGAAGCCCCGAATGG
TTTTCGATCCTTTCGGCTTTCGACGGATGACGTAGATGTAAAATAACTGATTTTTACATC
ATGATGACCTAAAAATAATGTGCCAATGAATGATGTAGTTGAAAAAAAATTACTTAAGTT
TTCTTCATGATATAAAATAGGACATCAAGTGATGCACTTAGGCCTCCCTAGCAAAACGCG
TGCAACCCCAACCGCCACGTGCAACCTTTCCGCGTCCCGTCGTCAATGAATCCCACAGAT
GTCGTCTCTAACTCAGTGGCGGAGGTAAAGGGTGAATAGGGTGGTCATCGAACCATCCTA
AAATTAGAAAATGACATTTATATCATAGCAATTTTTTTTAAAAAAAAAACTAAAATTACA
TGCACAATTATATTGTTGGTCCATTCTGACTCATACCGCCAGGTCCGTCATTCCGCGTCC
ACCAACGCTCCTCCGCCATGCCTCCCCTAAACATGCGCAATGGATTTGCACCACCACCAT
GAGTTGCTGGTCGTGGCTGCCGAGCTCCGGCTCCGCTAGTCTCCTCGCGCGATTGGAGCA
ACCGCCTCTTGCTATGAGCATGCTGGCCAGGGCCACCGAGCTTCGGCTCCGATCATCTCT
CCGGGCGATTGGAGCGAGCCGCTAAGCTCTAGCTCTGCTGTCGTGCAGTCGACGATTGGA
GCAAGCGCCTCCTTCTGCAGGGGATGCCGATGGTGATTTCTTTAGTAGTTCGGTGTTAGA
TTTCTTTACGTAAATTGTGGAGCGGCTGCCCTATTTTTCATCATTTATTGGAGCATGTAA
AATGTCACTTTTTTGTGATTTAAATTTTATTCCAATCACAATTTGGTGATGTATTTTACA
TAAACTATTGAATATGCTCTTACATCATGAAATTTATATTTTTAAAGTTTTGAATGATAT
AATTTCTATGTCGTATGACTCGTATATCATTGCACATCGAAAGCTCTTTATTCTTTGGAT
GCTCGTGCGTGATTTCTGCCATGATGTGCAAAATGAGGATGGCATAGTGTGAAAAACACT
CCAACGATAGAGTTTACTCGGCGGCTACGACATACAAGCCACGGTACTTGGGCATGATCC
TATCTCCACATGGTTTGGAAGACTTGGGCATAGTTCAAAATCATATTTTTTGTTTGGTTG
GGAAAAGGGGTTAAGAATTATGGTCTTTGCCCTATTTGCAAGAGGGTGCAAGAAACCGGA
GCACACCTCTTCTATAAGTCCCTTCATCCTTGGGCTTTGAAAACTTGCAATCGACAAACT
TAAGCTAGTGCACGCGTTTATTTTGGCATGGCATCTTGAGGAATCCGTCAAAAATTGGTG
GTCTAAGTGTTTGGGCATAAACATCCCCGATAAAAAGGCCTTGACCTTCCTCGCCATGCT
CATCTCCTGAACTATATAAAACAAGAGAAACTCGAGTTTTCCTTCACAAGAGTGCCCCAC
CACCCATTTTGCTAGACATCGTCTTGAATGAGGCCAAGTTGTGGTCCACCGGAGGGGAAA
GAACCTACTCCCTCCGTTTCGTAATATAAGTCTTTTTAGAGATTCCACTAGAGGACTACA
TACAGATGTATATAGACATACTTTAGAGGTTAGATTCACTCATTTTGCTTTGTATGTAGT
CCCTTAGTGAAATNNNNNNNNNNNNNNNTATTTAGGAACGGAGGGAGTAAGAAAAATTGT
ACAGCGAGAGTAATTGTCATGGGATATTTATAAACCTCTTCTCTTCTTAATTAATACATG
AAACAAATCTTTTGTCTCTGTTTCATGAAAAAAGTTTAATCATGAAATGCAGAGCATTAT
AGAAGTTACATGTTTACTTTGTAATGATGAAAACATTTTTACACGGTCGAGTAACTCTTT
TTATATGAACACGAAATATGGCCCCACATTCTTTTTTTGGAAAAGGAGGAGCACCCCCTA
CATCTCTTGATGCACACAATCATATTATTAAAGATGCAAAATCCACCAACAGAATAACAT
CGACCCGAAAAAAAAAGAAAAATATGAAGCCTCATGCCTCATGACAGGAACTTCACCAGA
TAGCCAATAACCTTATGTTAGAATAGCCACTAACCTTATGTTAGAGCAACTCTAGCAGAC
CCCGCATCCGGTCGGCCCGCAAAACGCGTTTGCAATTCGCGCAAAACCGCTTCTGCGGGC
CGGTGCGAGCTGGCACAGATGCAGACCCCGCATAATGGACCGTAAAAAAAGCATATTCGT
GGAATATACTTTTTTCACGGGTCGGCTTCTGCGGGTTCTGATCTGGCG