morexGenes - Barley RNA-seq Database

Contig contig_1564334
Source Contig contig_1564334
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564334 (8746 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1564334

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12897	3	4295 bp	MLOC_12897.1	Available	Available	LOC_Os03g20949.1, FRAME:+1, EVALUE:0.0, 13103.m02510 protein phospholipid-transporting ATPase, putative, expressed
CDS Structure of MLOC_12897

Contig Sequence (8746 bp)

>contig_1564334 8746 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCTCCCGCCGCCCCGGCCGTCCCCGCGAGGTACGACCCGGCCTGACGCGCGCA
GGTCGCCGACGATGCTGGCGTTGGCCCAGAGAGAGCGAGAGGAACAACGCGGCGGAGTCG
TCCGCATTTTTGCATCTCGTGCGTTGGGTTCGTCCACCGTTCGCGCGTGTACGCCTCAGG
TCCGATAGGCGGTCGGGCAACACAAACAGATAAAATCCGAACAAAATTCGTGTTCGTTTG
TGTCGCTCTGTTGGAGTTGCTATAAGAGCATGACTACTAATAGCATATTCGGTTCTTGGC
TATGTGAATGTGAATGTGTCTTTGCGAAAAAAATATATATTATTTTCTCCGTATATACAG
AAAAATGTCATGTAAATGGATGGGCCACTCTAATTTGGGTGCCTGGCGCATGGACCGTTC
GTTAGTCCGGCAGCCCAATGAGTTGTTTAACGGAGTTGACTGGATCAAACTAATCTGGGA
TGGAGCCCACACGATTCCAATGGATCCTTCCAACACCACATCCCATTCACGTGGATTTCT
TGCACTTGTCCATCTCAAATGGTCAACTTTGGACACCTAAACACCGGAAAAATATTCCAT
AAGCCTCTTTTCGGTCAGTGTCTGACCTTGATACACAAGAAATCTCATCTCCACTAGACT
TGAACTCGTTTGGTCAAAGGCATGCGCCCTCAAAATACATGTGAAGAGCGAAATTTCTTG
GTAGCCAAACTGTTAGTATCTGGAAGGCATATAGAATTGATCCGGTCACTGGTTGGACAT
AAAAAGGGAGGAAATACAAAGGAAAATGGAAAAGAGCAACCAGTACTCTGCCTGGCTACT
CTACTTTCCCAGGACAGATCACATCCTAGTACTCCACTGTGCGAGCGATATGGCGTGGTC
ACTTCATACAGACATGGTCATCCATCAATCCATCCATCAACTGCCACGAGAGAGCTCTGA
GTTTCAGGAAGAAATGCTCCCAGCTCGACCTCTGTCAAGTTCTGCCATGCGCACTGCGCA
CGGCCTAGTAGTTCCATGATTTCATTTCTTTCCTTTTACTAGCTGAGAAACTTGACGCTT
TCATCAGAACGCGTAAAATATTTCACCAGCTAGCTCCCCGTGCCTCGCTCTGATGGATAG
ACACACCCCAACACCTGCAAACTGCTATACTACTAGTATTAAAATTTTACAATGATATGT
CATCCAACTGAATTTAAAAGCTTTGGGACCAATGGAAACAGGGGCGTAGAGCCAAGACCG
ATGCAGCCGCAGCATAGTTTAGTGCAACGTAGCTTGTGGGTTTGGTTTGGTCACAAGATT
GGATTGGACAGGGTGCTCCCACTGATGGCGCATGCGCTATCGTCACGCATGGGTTTCTAG
AACTATAAGTTCTTTCCAGCGTCCGTCCGTCCGATGACTCGTCGCCATGTTTATGTTTAC
CAAAGCACATGTCCGTGGTTTACGGGGACTTTACTTTTGAGCCGAGGGTTTCATGTCAAC
CCTGTACATATTGCGCAGAGGTTGAAAGTCGGCTTTGCCAAGATTTAGTTAAGTTATGCC
TCCATGCTCTGCTCCAGAGCAGAGCGATCCTCTGTCAAGATTCTCCCGGGGTAAAATATG
TTTGCGTCCAACAATTAGGTTATTTATGAAGGCACTTGTGTTGTGTTAATCTAACGTAAG
TACTCCATTGCGAACGTTGACTTGATTCGAAACAAAACGCAGAAAAGAAAGCAGCAGTGT
TGGGGTAGCGAAAAGTCATAAGTGAGAGATGGTAGTCCGTATTTGGTGATTGCCGTGCAG
GTAATGCAAATGCAAAACTGTTTTGATTGTAATTGGGATTTGGGAGGGACCCACGGTCGC
CGGCACACCCTCGATGACGGACCCAAGAAATGAAGAAGCATCATCGATGATCCATTTGGC
GTGTGTGGAAGCTTCGGCCAGAAAGCAGAGCCGGCACCCCAAACCGACGAAAATGACAAG
CTTGTTTAAGCGAGTCGCCGTTGCCGTCTCCCCCTCCCCGCTTTCGGAGCCTGTTTGCAT
CCAGAATTTCTTGACCAGCTAAGCTACCGGCTGCGCTACTCCGAGTCTACGTATGACAGC
TTTGTTTCTGCACTAATTAAACCGCATATTACATTAACTAAGTTAAGCCGCCTATAAATA
AACAAAAACTAACAGCTCGGTTGGCTTCATTCCCTTGTCTTCTCTCTATCATTTCGCGGG
ACTAATAACAAGCTTGTGGGAGGAGGGAGCTTTATCAAATGCCATCCTAATAATAAGAAG
AAATTGAACCGTGACCTTTTTTTTTTTTTTGGAGAAGGAAATTGAACCGTGACCTGATCA
AATTTCTGCTTGCCTTTGATGACTTGACTAATAACTAATATCGATTGCTTGTTAGACTTT
TTTTTTATTTCTAGACTACTCCATTAGAGAGTTGGGTCATGAGACAGGAGAGGAGCAGCC
CCCAAACCCAAACAAACAAGAGAAACAAAGCCTAGAGGTCTCTCCCTCCCTCGCTCATCC
AAACGGTGCTTTTGTCCTCACCAACTCCCCTCCGCCAGATTTTAAGCGCCACGAGCAAAC
CATTTCAGCAAGATCGCGTATCTTTTCTCTGCTTGCTTCCGCTTCGTCTCCCTCTCCTCT
CCTCTCCTCCCCTGAAATAAAAATTCCTCTGCAGCAGCAGCAGCAGCAGCAGCTCATCTT
CAATGCAACACTCGCCATAGTTACTACCACGCATCCACTTCAACCCAACCACTGCTCTGT
TCTGCTCTGCTTCCTTCCTTCCTCCCCTGTTTGTTTCTTGAACCCAAACCCAGCTCAAAA
TCGGACCTTGGCGAGCGTCCCCATGGGCGGGGAGTCCAGGCTCTCCCACTGACGCGGCTG
GTCCGGCCGGTCAGCGCGCGCCATGGCCGAGGACCATGGATCGTCGCGGCACATGTCGTC
CATGTCCATGTCGCACAAGGAGCTGGGAGACGACGACGCGCGGGTGGTGCATGTGGGCGA
CGCGGACCGCACCAACGAGCGCCTCGAGTTCGCCGGGAACGCCGTGCGCACCGCCAAGTA
CTCGCCGCTCACCTTCCTGCCGCGGAACCTGTTCGAGCAGTTCCACCGCCTCGCCTACAT
CTATTTCCTAGTCATCGCCGTGCTCAACCAGCTCCCCCAGCTCGCGGTCTTCGGCCGCGG
GGCCTCCGTCATGCCGCTCGCCCTGGTCCTCGCGGTCACCGCCGTCAAGGACGCGTACGA
GGACTGGCGCCGCCACCGCTCCGACCGCGCCGAGAATAACCGCCTCGCCGCTGTCCTGTC
TCCCGGCGCCGGCGCCCAATTCGTACCCACCGAGTGGAAGCACGTCCGCGTCGGAGACGT
CGTCCGGGTCGGTGCCAACGAGTCGCCCCCAGCGGACATGGTCCTCCTGGCCACCAGCGA
CACCACCGGCGTCGCCTACGTGCAGACGCTCAACCTTGACGGCGAGTCCAACCTAAAGAC
TCGCTACGCTAAGCAAGAAACCCTCACGACGCCGCTCGAGCATCTCGCCGGCACCGTCGT
CAGGTGCGAGCGCCCGAACCGCAACATCTACGGCTTCCAGGCCAACCTGGAGCTCCAGGG
GGAGAGCCGCCGGATACCACTCGGCCCGTCCAACATATTGCTGCGCGGCTGCGACCTCAA
GAACACGTCCTGGGCCGTGGGCGTGGTGGTCTACGCGGGGCGCGAGACCAAGGCGATGCT
GAACAACGCGGGCACGCCGACCAAGCGCAGCCGCGTCGAGACGCAGATGAACCGCGAGAC
GCTCTTCCTCTCCGGCATCCTCATCGTGCTCTGCTCGGCTGTGGCCACGCTCACGGGCGT
CTGGCTGCGCACCCACCAGGCCGACCTGGAGCTCGCGCAGTTCTTTCATAAGAAGGACTA
CCTGAAGGTCGGCAAGGACGGCAACGAGAACTACAACTACTACGGCATCGCGGCGCAGAT
CGTGTTCAACTTCCTCATGGCGGTGATCGTGTTCCAGATCATGATACCCATCTCGCTCTA
CATCTCCATGGAGCTGGTGAGGCTCGGGCAGGCATACTTCATGATCCGGGACGCCAAGCT
GTACGACGCGTCGACCGACTCGAGGTTCCAGTGTAGGGCTCTCAACATCAACGAGGACCT
GGGGCAGGTCAAGTGCGTCTTCTCCGATAAGACCGGCACGCTGACGCAGAACAAGATGGA
GTTCCGGTGCGCAAGCATCGATGGCGTCGATTACAGCGACGTCGCACGGCAGCGACCTGT
CGGTAGGGCTAGCTTCTCTCTTATTTCTCGGTAAATTCCATCGAGTGGAGGAGTCCGGGA
TTGGGATTTGATGGCCTTTGATTCATGGCAGAGGGCGAGCCGGCTTGGGTGCCAAAGGTG
CCGGTGAACGTCGACAGAGAAGTGATGGAGCTGGTGAGGAATGGGGGTGCTACGGAGCAA
GGGATGAACGCCGGAGAGTTCTTTCTCGCCCTGGCAACGTGCAACACCATTGTTCCTTTG
ATCGTTGATGGCCCTGACCCAAAGAAGAAGGTGATTGACTACCAAGGCGAGTCGCCGGAC
GAGCAGGCATTGGTTTCTGCCGCCGCGGCGTATGGCTTTGTGCTCGTTGAGCGAAGCTCC
GGGCACATTGTCATTGATGTCCTTGGTCAGAAGCAGAGGTATACATCATTGATGATAGAT
TTGCATTGGGAATAAGGACAAACTGACCATGGGAATTTTGCTTTCATTTGATGATAGACT
AGCACAGTTTGCCGTTAGTTTGTGTCTTATACTAGTTGGGGAAGTTTCGTTGGTTTGTGG
CCGTTGCTTGCATCTCTCTTTTTTTGGGCCTGCACGACATGTGGTTCAGTCCATTTGTGG
TAGTAAGGCAACCGCAGAACTTCAGATATTGCTGCACCTAAACTAACAGTGGTTGATGAC
TGCAATAGGTTGAGTCGATTCCCTTTTTTTTTTTGGGTACATTTAGAATGTGCAACGTAT
GCTTCTGTTTGCTTCAGTCCTTTGTGCGTCTGCCCATTACTAATAACTTTCACAAAACAT
TTAATCTCCTTTTCTGGACTTATTGTGCAGGTTTGATGTCCTTGGTCTTCATGAGTTTGA
CAGCGATCGCAAGAGGATGTCAGTTATAATTGGCTGCCCGGACAAGACTGTCAAGCTGTT
TGTAAAAGGCGCAGATAGTTCCATGTTTGGAATCATCGACAAAACACTGAATCCAGATGT
TGTCCAGGCAACTGAGAAACACCTCCATTCATATTCGTCAGTCGGCCTGCGAACGCTTGT
CATCGGTGTGCGGGAACTTAGCCAGGCAGAGTTTCAGGAGTGGCAAATGGCTTACGAGAA
GGCTAGCACTGCATTATTAGGCAGAGGCAATCTCCTACGCAGTGTGGCCGCCAACATTGA
AAGGAACATGCGCCTGCTGGGAGCCTCCGGTGTCGAAGACAAGCTGCAAGATGGGGTTCC
TGAAGCAATTGAGAAACTAAGGGAAGCAGGCATTAAGGTTTGGGTGCTGACAGGTGACAA
ACAAGAAACTGCCATCTCCATTGGCTATTCCTGCAAGCTTCTGACAAGGGACATGACACA
GATTGTAATCAATAGTAATTCAAGAGAGTCATGCAGAAAAAGTCTGGATGATGCCATCTC
CATGGTTAACAAACTTCGGTCGCTATCTTCAGACTCTCAATCTAGAGTTCCCCTCGCTTT
GATCATTGACGGTAACAGTCTCGTCTACATTTTTGACACAGACCGGGAGGAGAAGGTATG
CAATCACACTAGCATCTGTATAAGCGCAGTGATTTTCCCACAAAAAGAAAAACAGTCATT
TTCTTGTAAATAACCCATGAAATGTCAACTTTGCAGCTTTTTGAAGTCGCGATAGCGTGC
GATGTTGTTCTATGTTGTCGAGTGGCTCCTCTACAGAAGGCTGGGATTGTTGATTTAATA
AAGAAGCGAACAAGTGACATGACTCTAGCTATTGGAGATGGTACATTTTTTGTTTCAAAC
TAGTTCAGCACTTTCATCAATTGCTCCGAACTATTTGTTTTTTGTTATTAATCTGAAGAA
GTATCACCTTTTCAGGTGCAAATGATGTGTCCATGATCCAAATGGCCGATGTTGGCATTG
GCATCAGTGGTCAAGAAGGAAGGCAAGCTGTGATGGCCTCAGATTTTGCCATGGGGCAGT
TTCGATTTTTGGTCCCACTGTTGTTAGTTCATGGCCACTGGAACTACCAGAGAATGAGCT
ACATGATCCTATACAACTTTTACAGAAATGCTACTTTTGTCTTTGTGCTTTTCTGGTAAG
TGCATTCCCTTTATTACCAAGTTCGTTCAATGTGCACTTAGAAATATACCTAAACCACGA
TAGCCATTGCAGGTATGTACTTTACACTGGTTATACCCTGTCAACAGCAATAAATGAGTG
GAGCAGTGTGTTATACTCTGTGGTCTATACCTCTGCGCCGACTGTCATTGTCGCCATTCT
CGATAAGGATCTGAGTCGAAGGACATTGCTGAAATATCCCCAACTCTACGGTGCGGGGCA
GCGCGAGGAGAGTTACAATCTAAGATTATTCATTTTCATCATGGTAGACTCCGTTTGGCA
GAGCGTTGCAGTTTTCTTCATCCCTTACCTCGCATACAAAAACAGCGCAATCGACAGCGG
TAGCCTGGGAGACCTGTGGACACTGTCTGTTGTCATTCTTGTCAACATTCACCTTGCCAT
GGATGTCATTAGATGGACTTGGGTCACTCATGCAGCAATATGGGGCAGTATTGTGGCGAC
ATGGATTTGCGTTATCATCATAGACTCCATACCTACCTTGCCCGGTTTCTGGTACGTACT
CATCCTTATTGATCCTTATTATTTGCTTGCCTACTGGAAAAAAGAAAACCTACATGCTCT
CCAAATTTGAAACTGTATCCTACATGATTTCTGATTCTCTAATTGAATCACAGGGCAATC
TATAAGGTGATGGGAACTGCATTGTTCTGGGCATTGCTTCTTGCGGTGATTGTGGTTGGA
ATGATCCCTCATTTCGCTGCAAAGGCCATCAGGGAACATTTCATGCCCAATGACATCCAG
ATTGCGAGAGAGATGGAGAAGTCGCAAGATTCTCGTGATGTTTATCATCCAGAAGTCCAG
ATGAGTACATCCACTCGAGCGTAGGAGTAGGGGATATTTGTTCATTCGAGTAGGCTAGAG
TTACACCTCTCTCTTTCTGAAGAAATTACACCTTTTCCTTGGTTCTTTTTGTTGTGTGTA
TATAAAGCAATTCTTTTGGCAGTGAGCATGCTTCTTGTTGCTTGCTACTCTGTCAACTAT
CCAAAGGATAGATTTCTTGTAGCCATGCCGTGCATCCGCCTGCATTTTTTTTTGTTACTT
TATACGAAAAGAACCGTACAGGAGTTAATTGTACATATTCAGGAACTGATTTATATTATG
AACATTCTGAAACTGATGATACTGATTTCCTTGAGCTAACGTACAAGCATTGCGTTTGTT
GGGTGCATAAATAGACATACGGAACAGCCATACGTTTTTACCGTGCTAGAGCATTTCTAA
CCGATGCCCTGTAATCCTTTAGTAGAGGATAATAGCCGGCTATACGTGGCCATGGGAAAC
CTGACCCGGTTGGCCCGGCCCAATCAAGCCCGATCCGGCCTGACACGACCTTGCCCACGG
ACCGGGCTTGGTCCTAGATTTTGAGTCCGTCGGGCTTACCGGGCCGGGCTCGGACCTAAA
AAACCCCGACTTTACGCCTACATCGGGCCGGGCTTCTTCAGGCTCGGGCCCAAAAACTAG
GCTCGACGGTCAGGTCGGGCTTCTTCAGGCTCGGCCCGGGCTTGGGCCCAAAAACTAGGA
TTGACGGTTGGGCCGGGCCGGGTTCGGACCGAGTTTTGTACCACGGGCTTTTCTAGGCAC
GACCCGAGTTTTGGCCAGGTATATAGGCGGCTAACTCGAACTAGCCGAAGTAGCAAGTTA
GGGGAGGAAAAAAAATCCTCCCTCGCCCGAAAACTCTCCCATCTCTTAAGTATACTTGGC
CTCGGCAGCCCAAAGTAAAAAATTTGCCCTCCTCTCTTGCGTGAGCGAGCAAGGGAGTAT
CGAGCAAAGGGGCGAAAACAAAAAAGTTGTCACCTGTATTGCAGGTTGATTTTAAATAAC
GTGAGGGTTTATTTCCCGTAAGAAGTCTATGACGGTGAACCGATAGAAGCAATGCGTGCT
TTATTATTAGGTAAAGGTTGATCCTTTTGTGTTGTTCGAATGGGGGTTGCGTGATGGTTA
ATTCCTCCTAACCTTCTCCCTAAGGTCATGCGAATAATACTTTGCTTCGAGGGCTTTGAA
TTTTTCACAATAAGTATATGAGTTCTTTATAATTAATGTAAGTTCATGAATTATATGTAC
TTTCACCCTTCCGCATATTGCTAGCCTTTTCGGTACCACACATTGCCTTTTTTCACTTTG
AGAGTTGACGCAAACTTCGCTGGTACATTCAAACTCCGTGATATGATACGCTCTACCACA
CATAAGCCTCTTTATATCTTCCTCAAAACAAACGTCATACCTACCTATTTTTGCATTTTC
ATAGCCATTCCGAGATATATTTTCATGCAACTTCCTTTTGGAAATATGCCCTAGAGGNNN
NNNNNAAGTGTTTATTATTATATTTCCTAGTTCATGACAATTGTCTATTATTCATGCTAT
AATTGTATTACGGTTCAGGAAAACCGTAATACATGTCTGAATATAT