Contig Data
morexGenes
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Map Locations of contig_1564226 (2387 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_1564226

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12841 2 945 bp MLOC_12841.1 Available Available LOC_Os04g41490.1, FRAME:-3, EVALUE:4e-102, 13104.m04071 protein DNA-directed RNA polymerase III subunit RPC1, putative, expressed





CDS Structure of MLOC_12841






Contig Sequence (2387 bp)

>contig_1564226 2387 assembly3_WGSMorex_rbca.fasta
GAGGCCGGGGCGAGGCCTCCTTTTCGAAAAGAAAAAAATGTGACATGTTTAACAATACCG
AGAGCAAAATGCAAGCAGACAAACTTCCTTTAAGTGCATATACAAGTTCAAAAGAATATA
ATTATCTGAATAACTTACCTCACCCAGCACTACTTTCTCAATAGAACATTTCACTTTGGC
TGCAAACAACTCATCCTGCTCAGACAGAAGTTCTGTAGTGATAATTGGTGTGCTTATCTT
TTTAACAGCATTGATGATTTCCTTGATGCGGGGAACTCCAAGAGTAACATCTTTGTTATT
CTTCGTTAAGGAAACAAATCTTTGAAGGATATTTAACTAGTATATTCAACATCCTATGTT
TATATTTCTACATTTTGTATGCCATAGAACCCTATCATATCAATAGTAACCATAGAACTT
TGTAACTATTATTGAAAGTTTTTTTCAACTCATTAGATAATATAAATCATAGTAGCCCCC
TAATGATAAGTTTCAGAAAATAAAGTAAATGTTCTACTTGCGCATCGTTAACATGCCACA
ATAATAATACCATTTTCCTTAAATACAAAGTAAAGGAAGGATACTCATGCTAGCTACTCC
TGCAAAATGGAAGGTTTTTAATGTCATTTGGGTCCCAGGCTCTCCAATACTCTGCGCCCC
AATTGCCCCAATTGATGCTCCTGCTTCGATTATTTTTGAGTGATAACGAGATAAGCAAGT
GTCCAAGAAAACCTGTGGTAGGAAAAAGGACATAATAATCATATAGCAGAACCACATAAG
AACAAAATACATAAACAAACTGATAAAAAATCCTTGTACCCCCAGTTAATTTAAATTGTT
CATCACAAGAATGCCACTGTTTCTACCCACAGGCTGACTTTCTTAGGGCTTTGATGTTTT
TAGAAATGCAGTCACTTAATAACCACAACAATATACCGTTACCACAACAATCTACTTGAT
GGAACATTTTACTGCACGAAATTGGTCATTTCATCTTGCAGATACACAATCTTATGCGAT
GTGCCTACGATTACAGTAGTTTGGTAAAGCAATGATGATTTAGTACATGCAAGATTTATA
CACACCTGCAGTTGTTTCGCGGATACGCCAGAAATATCAGCAGCAATGCGTTCTTCAATG
CTAGAGTCCCTCTTTCCCACACGATCTTCATCTAGTTGAAGCGCTCTCCTTGTGCTTCTA
AGAATTTTGATACGGTCCTCAAAGAATTTTGTTAACATCTCTTTGAACTTATCGCTACAA
CCACCAGATGAGGCATCTTGTTCGGAGAGCTTATCATTAAACATTTGTAAGATTAACTCT
GGAGATAACGTGTCATCTCCCCGTTGCGGACATGTAGCCTACAAAGTTAAATCGTCAACG
ATCAATGGTCAATGCACAAGGAACCCTTACCTCATTAACATAAGAAAGTATTCATGTATG
TCAAACTAACCATGACTTTCCTATACAATTGATCCAAATTTAAGGGACGGCCACCTTTTC
CTTCCATCTTTACAGGATCCATGCCATCGTCTCCATAGACAAACTGAACAATACCGCCGC
TAGCGTTACGGACAGTCTGATCATAGAAAACTGACAGATCTTCGGGACATATATCCAGTT
TCTGCTGTTTTGACCTATGATTACAAATTCAAACGAAAGGAACAACCATATATCAGATAC
CTACTAAAAACAAATCCAAAACTGATTCGGAATATCCAGTAGGCACATGGAGTCAACTGG
CAATGCCTAACCGTTTACACCTCAAGACAAAATAAGACATGTCATAGTGGATCCACACCA
AGTTAGTACAAAATAAAACATGTTGTAGTTCATCCATGTCTGTAAATAGGCCCTCGAATT
GGTACAGTATCATAATTTCACATTGGTAGTCTATAGTAGGCTAGTAGCTAACAAGTACTC
CCTCTGTAAAGAAATATAAGAGCATTTAGATCACTGAAGTAGTGATCTTAGTGATCTAAA
TGCTCTTATATTTCTTTACAGAGGGAGTAGTTGCTGAAGTCTCTTGTGTTAAACATGACA
TAGCCGTACGTATGCAGCAGGGTTGTAACATGATGGAGATTACTTATTTACTTGCGCATG
TAGGTAGGTAGTTAGGAGATATCTCTTATCCCATGTAACTTAAACTCTATCTCTATCTCC
TCCTTAACTTTCTCCTCAAGATGTAATCTCTACCAACTGTATGCACATCAGGGAGGTGCG
CCCCTGTATATAACACGTACGGTGTCTGTTATGACCGGCTTGGCCTATGGCCGGCGTAGG
CCCATTGGGCGTTAATATTAGCGGCTTGGCCCGCAAGTTATCTTAGGTAAATTACTTTAG
GAAAGTTATCTTAGGCTCGAGTTATAAATACTAGTTGTAAGACATCA