Contig Data
morexGenes
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Map Locations of contig_1564189 (4410 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1564189

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12827 4 1516 bp MLOC_12827.3 Available Available LOC_Os02g10020.1, FRAME:+3, EVALUE:4e-171, 13102.m01106 protein Mad3/BUB1 homology region 1 domain containing protein, expressed





CDS Structure of MLOC_12827






Contig Sequence (4410 bp)

>contig_1564189 4410 assembly3_WGSMorex_rbca.fasta
GCAGTCTATGTAAAATAACTTTGTATCCTTTTTATTTTAATGCAATCTATTTATTAAAAA
ATGTTGTACGCGCGCTGCATTATAGCGCGGCTGTTAGAGCCAGCGTCTATCCTCGCGCTA
AACCAGCCGAAACGTGCGCGGCAAACGCATTTTTGAACGCGGCGCGTAGCGCGGCTGTTG
GAGATGTTCTTATACTGGACACCCATGTCTTTGGTTTAGAATCACCGTTGTAACAAATTG
AGGTTGTGATTCGGTTCGAATCACCGTCACAACTGTTTTTTCAGTATAAAAGAAAATGTT
TTTACAAAATGCACGTTAACCAGCGCCTGCAGCGTCAGATAGCATTTTCCGTTTTCGGCT
GCATGAAGAAAAACATATCATACATCAGGTGGGCCGTAGATCTGGGCCCGTGCACTTTCA
AGCCCAAAACTGACAAGAGCCCACCCATTGTATATAACCCAACCCTGAGCATCGTCCGCT
CCTGAACGCAACGGTCTAATCGACGAGTTTGAATCCTATCCCTCGCCCAACGGTAGGCTT
AGGAGCGGCACACATGGCGGCGGCGGGAGACCTAGCGGCGCTCGACGCGGAGACTCTGGC
GCTGCTGGGGGGAGGGCTCGATATGGCGCCGGTGGCCGTGTGCGGCGAGTGGGAGACCTT
CAAGGAGAACGTGCGGCCGCTGAAACGCGGGCGGAACGTCGGCCTCCTCAACCAGGCCCT
CAAGGCGCACGCCGACCCCGCCCAGCGTGCCGCCCTCCTCGCCGAACGCAGGTACGGATC
TTTCTCAGCACGGGCTTTCGTGGTTCTTGGATGTATATTTTTTTCCCTTTCTGGTCGGGG
TTTCTTGGACAAGTGTCTGATAATATTGCTTGTACGGTGTTTGATGAATTGACTGATCCA
GGAGGATGATCGAAGCAATCGATGAGTACCAAGGGGAAGATCCGCTCCAGCCGTGGGTAG
AGTAAGTTCTACTTGATCCATCCTCCCCTTTCTGCACAGGGTCTCTTGGAAGCTCTAGCT
AGAACTTGGAGTGCAATGGTTGCTCCTTGCATCGATTCCTACAAGCCCGGTGCTCATAGC
TCTTCTACTCCGCTTTGCCTGTGTGCAGCTGCATCAAATGGGTTCAGGAGTCGTTCCCGG
CCGGCGGGGAGTTCTCAGGGCTGGTCGTCATCTACGAGCAGTGTGTGCGTGCCTTCTGGC
ATGACGAGCGGTACAAGGACGACCTCCGGTACCTCAAAGTGTGGTTAGAATACGTGAGTT
GCTGACTGAATTCGGCTTGATCTATTTTGTAATTCCGAAGCGTGTATATTTGACCTGCAG
TTTGGTTTCCAGGCTGGGAACTGTTCGGACGCTGAGGTGATATTCAGGTTCCTAGAGTCC
AACCAGATTGGTGAGGGCCATGCTGTTTTCTACATTCGCTATGCGTTGCTAATGGAGTCG
AAGAACAAGCTTAAGAAAGCTGACGAGATCTTTGTTCTTGGAATAGCTAGGTGAGATTCT
TCTTATGAGACACCGGCACTTCTATGTTTCGAAGGTTCTTGGATTTGGGATTACTTTGTA
GATTCAAGCACCCGTAAAAATATGTCTTGCAGGATGTATTAGTCTGCTATAAGACCAATT
GCTAATTTCGTCTAAAAATATCAATTGCTAATTTGATAGTCTGAGAGTGTCGATGTAGAT
GTTTGTTACGTATCAGTTTCAAGTCTGCAAGTGATCTATCCTGAATTTCTCGGAGTCCTG
TATTTTACTGTTCTTCAGGTCCAGATCGTATGCACCATTACACACTTTACCTACATAGTA
CTTGACTTATTATTACCTCATCTCTCTTCCACTAACTATGCAATTGTGTATATAATTGAC
TGCGCTGGTGAAATTTTATCCTTGGGTTGTTCATTCTTTTTCCATCAGGAAAGCAAAGCC
TGTGGAGAAGTTGGAAACTACATACAGGGCATTTCTTCGGAGATCAACCAAAAAGAAGGG
ACACGAGGTGCTCTATTTGTATTATTGCGACCTCTTTTTTTTCTGATCACCACTCTTCAC
TGAATTGTTTATTATCTCTTGTAACAGGATGATACGGCAAGTGACAATCAGCCAATACGC
AAATTCGGTAGTGACTTGAACCGTGGTGACACCAGTAAGCGTGTTGTGTTATTCTGTCAT
TAAACATCAACTTCAAGTGACTGGCTGGGTGTAAACTAATCTTGACTTCGATGTGGCAGG
AGGTCAGCATGCAGAGAATTCACACCTGTTGGCAAAGCCTAGGGTAACGCTGCAAAGGTT
AGTACCATTAGCATGTAATCAGACAAGCTATCTAGCCAAACCAGGAGGGTTTCTTGACTA
ACACTGATTGTATTGGCAAATTCTCAGATTCGATTTTAATACGCAAATTTCAATTTACAA
AGAGAACCCATTACCAAGTCAGGGTCTTGAGAGAGCTAGGAGCAAAGACAAGACCTGGAA
CACCCTTGGAACACAAGCAGATAGAAACAAAGAAAATAACATGATGCCTGCCAGATGGAC
TTCCCACAAGGTATTTTTGTAGAGCCACTAGAATTCTTCAAAGAGCAGATTCAGATTACT
ATTTGTGATAGTGATACTTTTCTGAAGGACAGACTACTATCCGTTCAGTAAATTTAATGG
AAAAGAGACTGTCATGACCTCTTCCGTTCACAAACTGATGATGACATTTCATTGATCAGA
TTCCACCGAAGGTAGCAGCACGGCCAGCAGTTCCGCCAGCTCGTGTCAGCTCCATTGAGG
TCTTCATAGATGACGAATGTGCCGAGTATGTTATACGACATCCTTAAGTTATCAGATTTC
AGTGAGTCACTATACAAACATAAAAAGTGTTTCTAAATTCCTTTTTGATCATCTTAGGGA
ACCAGCCCCGCCTCAAGTGCCCAAGAGTCCAAAACCATCTGTTCTGAAGCTTAGGCAAGC
AACAAGCAAAAACCTTAAGAAGTAAGAATAGTTCACTGCTGCACCTTTTGTTTCCACGCA
ATAAGCAACAAGCAAATGTTTTCTTTGTCAATGTGTGACCATGCTGTTTTCTTCTTTGTA
CAGGGAAACAGAATTGCTTAAGGAGAACCCACTGCGCAACTTCCCGCTGAGCAGCCTTAG
ATAAGTAAAAGTTTTTTTTTGGATGACTTGTTGTTTGAATCTGTGCCTTTATGACAAATA
AGCTTTAGACTCTAAAGCTTATAGATGCACCAAGCATGTAGGCTTGATTGTTGTGATCCA
TGTACTAGTTTGATTGGTTAATCCCCATCGAGGTGAGGATTGAATAAATTTTCAGTGTTG
CATGAATTGTTGAGGCTTGATCACAAGAGTACACTGATTTTGTTTTGTTTGGATGTCTAT
ATGACATAGAGGGGTTCACAAAGTAATTTAATATTGCCAGCTTCTAGTGGCACCTATCTC
TTTATTTTGTCTGAACATCCAGAGATGTCAAATTGATGTGGAGACAGCCTGATTATTTCC
TAGCAAAGAAAGAACACTAACGGCATTAGATTCTCCAAATAATACGCAAGTGCCATCACA
AACAAAACGTGACTTGATGCAAGTGGGTACATGACACATTGGATCAAGTATTTTAGTCAT
GGCAAGCCCCCATTCTCAACAGCTCCCATGTCTTGTACTAAGCTTGAGACATTTATTTTG
GAACGAAAAAAAAAACATGATTTTCTTCCATGGATCTCCACTCCATTGCTGCAAACTTCA
TCGGGTCCTGTCAAGCCCCGCCACAGGGTACAGAAGAAGGCGACGAAGCCGAAGCCGATC
ATTGTTGCCATTTGGGCCTTGTTTCCCGAAGGATCTTGATGCGCCCAGGACGGGACGGGA
CAGATCAGGCGTGTCAAAACTCACAAGCCCAAGATTTTGAATAATGTGTGTGCGTGCGTG
TGGTTTTGCTCTTATCGTTATTATTGTAATCTCCATCTCGCTGAACTAACTAACAAGCAT
GAACGAAACCGTGGAGGGGCACACGGATTTCGTTCCGATTCAGTTAGCAGCGCATTTTAC
AACGCATCAGCAGCAGCAGCAGCCTGCCTAGTACACGACAGGATCAAGGGCGCACAGCAT
GACATGATGAGAGAGCATTCCTCCGAAAGAGGATGGAGCCAAGAGAAATTTTCCAGGCAG
AGAGTAGTTTTAGTTTATGCAGGCGATAACGTATTTAAAAACAGCGGGCTGGCCGCATCC
TTGCGTCACACAATGTCTTACTTACTGTATATCACCTGACCGGCGCCATTTTTCATCCAT
AAGCTTTAAAAAACGACAAGAAAACGACGGGCAAACGCTCGGCGCTTACTGTAGAACCCT
CGAACCCTTAAATGTAAAACCAGTTTTAAGGGTTAAGAATTGCCCATTTTTGACACTTTT
AAGGGTTGAAAAACAGGGGCAAAGACTAGA