Contig Data
morexGenes
Links



Map Locations of contig_1564161 (5440 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1564161

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12815 1 1390 bp MLOC_12815.1 Available Available LOC_Os08g43470.1, FRAME:-1, EVALUE:2e-176, 13108.m04710 protein ER lumen protein retaining receptor, putative, expressed





CDS Structure of MLOC_12815






Contig Sequence (5440 bp)

>contig_1564161 5440 assembly3_WGSMorex_rbca.fasta
GCAGCCCGCACTTCCACCCCTACAACCTACATCCGAGACCTGATAGAACCCTAGCCTCTA
CCAGATGGCATTGCTGAAGCTTGTCAGCGACAAAAACTGCAAAGTTTGACAAAAGATTGA
ACTGAAAAACTAAACAAAATCAAACCCTTTTCTTAGTGAAACAAACCGAACAAATAACGT
GACAAAAGGCCAATCCCGCCAACCACCATCCTATATCTAGCCTGAGCAAACTCTCTGAAT
CCAAGGCCCATACAAAAACTGGAGATGTTGGCTCCAGCTGGAACCCTGGCCAGTCCAATG
CTTAGAGCTACAACACCAGATCAACACAAATCAAAGAGACCATGACCATCGAAAATGGAG
GATCTCATGGCCTCCCCAATCCGGAATTGGGATGATTGAGCATGTAAGTAGGCAAGTACT
TGAAAACTAGTCTGGATAAATAGTCAGCTATAGATAGTGTTCTCAACAGCCTACGCTTCA
CGACCAACAGTCTCCGGTACAATTTTTACCAAACAGTTTATAACTGGAAAAAGAAAAGCA
ACAGGACTCTTGAATCCATCCCACATGGGAAGAGAGAAGGTTGGGCTCCAGAAGCAGGGC
CACTGTTCGACAGTAAGACACAGCACCGAACAAATGAGTTGTGCATCATGTTCCAGATTT
TACACCACCCCAGAAGGAAGTCGCAGCACTAGTTGTCCACCAGCAAGACTGTGCCACAAC
AAGTCACAGGTTATCGCATGTTAAACGGTTTGCCAAAGCGACAGCGGAAGCTAAGAGTAT
GTACCTCTTCACATAGTAGTAGCAGAAATCTGCAAGGATGAACGTCTGGACGATTTCAGA
GAGGAGCACCATCGATGGCCAAAAACCATAGCCCAGAGCAGTCAATAATCTGCCACGAGT
ATCCAAGACCTAAAAACACAAGTACCATTACTTAGTTTAGATGGACTCACACAGTCATGA
ATCGTTGAATTCTGCGACATGGATTTAGTCTACCATATTTTCAAACCCAATGGATAAGCA
TGCTATTATTCCATTCATTAAAAGTAACATTTTTCTTAAAAAATGATGCAGCTAAATGTG
CAGATACTGAGAAGATACCGATACCATCCAACATGCAACTAGATAGAATTATGATTTCCT
GGGATATGTTAAATCAGGCATGAACATGGGCGATCATGATAGCAACAAATGGAAATTTAC
CTCGATTAAAAACATTTGATTATGTGAATTTCTACTTAATGGCGTAAACAGTAAACGGCA
ACAAGAGGTGCCATTTTATTTTAAGGCGTAGTAAAACTATGTTTTCACTGTTATGCTTTG
TTCACCTAAAGTATCTGGACTTTGGACCACTCTTTTCAAATATTTATGTAAATGGTCAGA
AAGCAGTTTGTATTGGCGCTTTGGTGCCAACAGAGACACTAAAATTGTACATTTTCAAGA
AGAAAAAGATAGGGTAAAGAACCTGAAGGACCCAGTGTGCACAGCTAAGGAACCTTGCCA
CACCCAATGCAAACACATAATGAGCTGTGAATGGTTCAACAATCTGCTCGAAAACATATC
TTAAAAGTTAGATAAATTTGACCATTCAATTCTGCATCCAAGGGTCTATGCGTGCTTTAA
CAGTTACCTTTGTGTTTTGCATCAAGCGCAACTGGGGCAGCACTGAAACAGCTTCCAAGT
AAACACAGAAAGCCCAGCAGATCCTATTGATCATGATATGTGATGTTGAAGGATGCGCAA
GAAACGCCAGCACACAACATGGTATAACCTGGACAGTAAGTATAATAAGTTAGTACTGGC
GGCAGTAAAAGGAAGTTCACAAGATAAACAGATTAACATGCAAAACTAGCTACCACAAGG
GACAAAGATACAACTCTTTTAGAAAGTGATACTGACATCTTGTGGACCTAAAACATACAA
CCAGGAAATGGCCTTGGTAGTGAGAAAACTTAAGTCGAAGAGGTGACACAAGAAATGAGA
CCCCATAATCGACCAATGTCTAATGGACTAAATCCTCGCAGTTTTATAGTTTAAAAGTTG
AATTCTTACCACGTAGAGCAATGAAAAATTGTCCTTGTCCAGCATATAAGTTGACCTCAG
TCTGAACCGAATCATGTAAATGACAAAAAGAGTAGCTACTAGTGTAGCTGAATCCAGTAT
TGTATGGATGTCATACTCCATAACAAAGCTGCAGTACAACCTAACGGCCAGGAACAATGC
TGTCAAATCCTGAGACTTGAGTGAAAGTCCTGCAAGAATTTAAGAAAGAGGGTTAGTTAG
AGCATGTATATGGATTACAAAGCAATTAGCACGAACAAACTACACAAAAGGAAAAATAAG
CAAATTTATCACACCGATATGGCAGTTAGTGTGTTTTATTACAGCAGATCAGTCATCTGT
ATGCACTTCACTATCAGTACAGACCCGGTTTCTCGTTAATGAAAACCTGGTACATAGATT
CCATTATCTAAGAAACTTTATTACTCCCTCCGATCCGAATTAAATGACGCAACCTCTATA
TAATATAAAATGAACATTATATAGAGGCTGCGTCAATTAATTCGGATCGGAGGGAGTACC
AGAGATATGTGAGAAGGCAGATTCTGTGACCATACAAATTATCCATGTGCATAGTTGTAT
ACAAAATTTTCAGAGCTTGAGCATAGAAATTTTCCTTGTATCTTGTATCAGGTGATGAAA
CATAAACCTGGTCATAACATTCAAACAGCTAAAAGACAGGCAGCAACATGAGCAGCAGAC
ACACTAAGAAAAAGAGAAATCATTCAGTGACATGCAGCAAAAAAGAGGAGTCGATCATGT
CTCTTAATATAATGCCACAGTTACCTAAACTACCGCAGCAAACATAAGAGTAGATCAACT
AAAATTTCCTAGCCCGCTGTCTGGAAGAAGTTAGACGATGCTGCTTTGGCTTCCATTTCT
AGCTCTGCTAGAGCTGCTTCATTTCGCAAAGAAAACATGCATCTTAAACAGACGAAGAAC
AAAGGAGCTCACTTTCCGCAAAGAAAAACATGCATCTTAATCAGTCGAAGAACCAAAGGG
GCACACCTATGTTCCTAATAAGGATCCGAAAGACAAATTACAAGAATGGAATGATGCTGA
TGTGTATGAAGAGCATGTTTGTTGGTTCTTTTTCTCATGCAAATAGTGCCTGAGTTTGCA
CTATCCACGTCACCAAAACAGCATCTAGGGACAAAGTCATTCCAACAAATAAAGCAGGAA
AGTTTCTTACGAACAGCAACATGAGAGGGACAGGTGTTCCAGTAGGGACTGAAGCTCCAA
GAGATGAAATGGTCCAAACAAACACTTTATGCACTACCACATACACCATAGCGATCAGAA
CAATCTGCTAGAATGTTATGGAACCACATTCATAGAACGGGCATACAGCATGAATTTCCT
GCATTTCGCACCAAGACCTCTATAGTACACAGATGCAGTTAAGAGACACGGGAACGGGCC
AGGGCAGTTAGATGGAACAGGCACATTCTTTTTGCACTTTGCACACATCCAGCGAAATGG
CTACACCAGAATTTCAGACTTCCTCAAATCAGTATGTACGTAGCATTAGTATTGCACTGC
CTTGCAATGCACCACGCAGCGCAAGTCGTAGACAGTGTCCAAGAAACAGTTACTTCTCAT
AGTAGTACGTGATAGCAAAACCGTGGATTCATAATTTCATCGGCCTGACCCCCACAAAAG
CACAGAAGTACTGCCTAGGTCCGTCGACAAATCAGGTTCATGATTCCAAAAGGAAAGAAA
AAAAAAATCCATGTGTTTTCAGCACAAAGGTGACCCGTAAAGGAAGGAAAAGGGCAATAG
CTTTGAAGAAATCAGATCAGACCGCGGTGAAGTGAGGCTAGCTGGACGGATCGAAAGGAT
AGCTTTGGAGAAAGGGGGGCAACAGAAGAGAAGAGAAGGAAGGGGGGGGCAGCGAGCGAA
CCAGCGCAGGTCTTCTCCTTGGTGAGCTTGTAGATGAGCACGGCGATGCCGAGCGCGTGC
GCTGCCTCGGCGGCGACGAAGAGGTTGTCGTGGTCGTGGACGATGAAGCGGATGAAGACG
AGCGCGGTCATGCCCGCGACGACGGCGAGGAAGGCCTTGACCTTGGGCGGCTGCCTCCGC
ACCCAGCTCAGCACCACCGCCATCGGCTTCCGCGACGCCCTCATCTCCTCCTCCCCGCTG
CTCTAGACTAGTACCGGCGGCGAGCGAGCACGATCGGAGTCGGAGAAGGGCTTGTTTGCA
GCGCGTGCGGTCTGGTCTGGTCCGGTCCGGCCTTCGGTTTTGCAGGAGAGGGGGATGGAC
GGGTGTGGCGTGGTACGGGTACTGTGGTGGTGGTCGAGTAAAGGTCCGGACGGGTCGGGC
TGGGTTTGGTGCAGCTGCAACCGTTTCGTGTCGTCGCCTCGGGAGGGAGATCAGGCACGT
ACTGCTCCTATATGGAAACGTAGGATAAATGCGATGCTTATCTTTGCTCTGATGAGTCAC
CGGTTCTTAGCAGATTTTGGCGTTATTATACACCACTAATAACGTGCCTCCAATCCAATT
AATGGATAGAATTAGATGGATTTAGGCAATCAATCAGTATTTGCATTTCAGGATATGGTT
CCTAAGTTTGGTTCGCGTAGGTGGGGGGTTCGGCCTGGCGAGTGGGTCGATCGACGGGAG
TAGGCCGGGTTAAGCCATCTGACCGATCTACCTGGACCGATCGGGCGGCTGGGCGGCTGA
GCTGAACGATCTGGTGTTTGACCTGAGCGTGTTGGATAGAATTTTCCATTGTTAATGCGC
CTCCCTCGAGGACCTTAGCTGGGTGGGGAGCGACGACGGCGACTCGCACGGAGGCCTCGA
GAGGACCTCGTGGAGTGGAGTGCGGAGCACTGCGAGACGGCGACTTCCACCAATGGATGA
GCTCCAACGCCATGTCATCCGGGCCCGGTTCTTCTCCACCTTGCCGTGGCAGCTCGACTT
GCGTGGTTCGACCCATCCATGTTCATGTTCAGTTGTGCTACATAGCCGTGCCGGATGGGT
CGGTTGGTGTAAAGCTCCGTGGCGTGAACCAAACCACCTGCCTGCCGTCCCGTGCCTGCC
CTGCGTGGGAGGAAGGGGGGAAGTCGCGTCGGCCGTGCCATGCCGAGCGGCTCGCTGTAG
ACAGTACTCCCGCAGTCCAAGCTTTTTCATACGACACTAATATCGTGTTAAAAAGGTTTT
TTTTTATCTACTACCACTAAAAAAAAGAACAGAAGACATGATGGTGTTATAGTCCCAGGG
TAGNNTCATAGGCCTGTCCTATAGGTCCTAGGCCCCTAGACAGTTCCGACTGAACCAAGG
ACGTCTCCATCATCCAGTCGGCGACGAGCANNNNNNNNATATTTAACGTACCGACTGGAA
TCCATTCTGTACATTGTAACCTCCTAGGAGGGCAACGGTC