morexGenes - Barley RNA-seq Database

Contig contig_1564041
Source Contig contig_1564041
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1564041 (7675 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_1564041

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12759	6	1727 bp	AK363359	Available	Available	None
MLOC_12760	3	4125 bp	MLOC_12760.1	Available	Available	LOC_Os03g62620.4, FRAME:-1, EVALUE:7e-164, 13103.m06920 protein late embryogenesis abundant protein, putative, expressed
CDS Structure of MLOC_12759

CDS Structure of MLOC_12760

Contig Sequence (7675 bp)

>contig_1564041 7675 assembly3_WGSMorex_rbca.fasta
CAGCAGCCGGGGGGCAGGGGATGACGGGGCACTGACTAAACGGTTGTCCAAACATTTAAG
ACGAATATAAAAGCGTCCGACTGTAGATGCTCTTATCCACTAGAACCAAACACAACATCT
AGCTACTGCACAATCTTCTATTTTCAGTTCTTCTAGTAGGATTCAGCGCGGCGTGGCCTA
TACATTTCCTATCATCTCCTGTTTTGATATCGTGTGAACTGAAGAAGGGCACATAGGACC
GATCAAAGAGCTTTGCCATTTTGGAGAGAGCATAATAAGTCTTGAAAAGAAGATACAACT
CTGGTTTGTGGAAAGCAACCTTTTAATCTTTCTATTCCGCCGAAATGTTACATAGAATAA
TGGAGTTTAAATAGAACTGCAAGAACGACTTACATTATGAGAAGGAGGTAGTGCTGTTTA
GGAATCATCAACGGTCAAATTGCAGACTCGAAATAAGAGAGAGAGATTTTGTAAGCCAAA
ACGGAAAATATGTTCCTGAAACGAGGATGGCGCGAATCTCGAGGCAGGGTCGAACGGCGT
GGAGGACAGGAACGGGATCGCAAGCCACAGCGACGCCACGCTGACCAGGCAGGCGACCAC
CCGTTCCCTCCTCTCCTTCCCACCTCTACTCGGCGCGGCCTCCACCACACGTCCGGAGCG
GAACGTCGGCGGCGGCGGCGGCGGAGAGAGATGGTGGGCTCGGCCGCCTACTCGGCGACG
TCCATCGTGGTGGTGATGGCCAAGGATAAGGGCAGGGGGAAGGGCACCAAAGGGGGCGCC
GCCTCCTCCTCCGGCGCCAACAAGGTTAGTTCAGCTCGATCCCCATTCCCTCCCGCTGCA
ATCAGTCCCTCTAGATTGAACCAAGATTTGTTTGTCAAGTCCGGCGCAGCATCACTCACT
CTTCTTATTTTCCGTCGATGAGCAAAAATGTTGAGAGGGGACTGAAAAAACAGTATACTT
GTTAACTCCGTTCTGAAGCTGTTCTTGGCCAGAAATGGGGAGTTCTTGCCTTTAATCCGG
AAGGGCATTGATCAGGGTATGTGCCGCTGGGAGTGTCCTCCTTACGCACTTGGTTCCTTG
TTTGCAGGTCGACCGGCGGCCTCCTAGGATTACATCCAACGTCAAGCACAACCTGAGGAT
CGTCAAATTCTGGAAGGTACTGCGCTGTACATGCCTTCCTGCATTCAGTTTCAGTTCAGA
CGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAAACATTATTGCAATATA
AGTTGTTTCCTACCTGGTCCTGTCGTTGCAATTTGTGACATTCAATTTAGAGATGAAAGC
GAATGCTCATGGAGCCAGATCATCAGATGCATGTAGTTCCAACCTGTCTTCCAGATGTGT
CTGAAACTCGTTATAGTGCCCTGTCCTGCTGCATAATGCATAATTCATCCATCGGATAAA
TGCCCACCAGGATTTGTTACAAGTAGTTTACACCTCTTTTCAGGATTACGAAAGGAAGCA
AACAACCGGGCCTCAGCCTGCCACCAGGTTCCGCAAAAAGAAAGTAATGAAGGAGGTGCT
TCCTGATGACACGGACTTCTACGAGGACCCTTCTGCCACTCTTACCTGGTCAGGCTCGTG
ATTCCTTTCATATCCAGTGCATTGCTTAGTTTTAGGTTGGCGATTCGACGTGTCTGCTGA
ATTTGCGCTGTTCTTTCCTCTAGCACAAATGACGGCAGCATAGAGATTGCCTCCCCTGTT
ATTCTTGTGGACGGCTACAACGTATGTGGCTACTGGGGAAAGCTTAAGAGTGATTTCTTG
AATGGGAATCAAGGAATTGCGAGGCAGATGCTCATTGATGAGCTGGTATCGTTCAGTGCA
GTACGAGGTTTGTACTAGATGATTAAACCATTATTTTTATGGTTCAGCTATGATTCTTCT
TCAAACAAAAAGAAAGGTCACATGTCTCAACTATGCTGTCTATTTTGCTGTTAGAAACTG
CTAGGCTGTTGTACTGCTTATTCTCTGGTTTGTAGTGAAAGAAAATTAATTACGACTTGT
AACTATGTGTATCTATCCAAGTATGGAGCACAATCTCCTGTTACTCTCTAAGACCGTAGC
TGCAATCGGTAACTTCTTATCAAGGGCCATGTGGTGTTCATGTAAATCAGCTATCTTATA
TCATTCATCACTATGATGCTTGCAGAGATAAAAGTTGTAGTGGTATTTGATGCCGCATTG
TCTGGGCAATCGACACACACTGAAACTTATAAAGGGTAAGGTATTGTTGTGTTAGACCAT
TTCCACATGTCTAAATTGACGCTTTATGCTAGACATTTCCGTCAGATGTTGATGCCCTGT
ATATTATCATAGAATAAATGTAAGTTGAATGTTCCAACCATCCCTTTTTAGTTGGTCTTT
AGGGGAACCCTAACGAACTAATTTTGCTTGAACAGGGTTGATGTGGTATATTCTGCTGAC
TTATCTGCTGATTGTTGGATTGAGAAGGAGGTAATCTAATTGTGAAGTTTTCCATCAGAG
AAAACAAATGAAGGATGCTTGAGAGTTCCTAGCTGATTAGTCCCCTGCATCCACACCAGT
GAAAAGTTAATGCAAAGTTTAATAGGCAAAAGTCCCTAATTCCATGAAGAATTTGTTGCT
AAAACTAGTCATATTAGAAAAGCAGTCAAGTTAGTTTCAACCAGCAGTGATGTCCCAGGC
ATATTTACTGGCTGTATATCACTACAATGATTATAGTACAATGTCCCAAGCACATTGTTT
AAATTTCCCCAAAAAAATTAAAAGTAAATCACTACAATGATTATAGTACAAGATTTATGA
TAATCTGAAATTGATGCACTGTAGGTTCTCCCCCACCATATTTTCATGTTGTGAGCGTTT
TTGTAAATTGTGATCCTACTAAGCTCAAGGATGGTATCACTAAACTTTCACGCCTACCAC
CAATAAGTGATCTTTTAATCAAATGGACATGGAGTGCCGTCGTACCGAATATATGTTATA
TGTGTTAATGTGTAGTGTCGCCAAGAGATTTCTTACGCTGGTTCTTACTACTAACTTAGG
TTGAGGCTTTGGTGGCAGATGGATGTCCAAAGGTCTGGGTTGTAACGTCAGATGTACTGG
AGCAACAATTATCGCATGGTGAAGTATGTTTTTGCTTCATGATTACCTTCGTCTGTTGGT
CTCTGTCTTGCACCAAACAATCATCCAGTGTATAGACTTAGATAGTGTACCTTTCATGAA
GAGTTATGCTGCATTTCTTAATTCAAAGCACATGCTAGTTTTATTGGTAGCATAGCTCTT
CTGGAAAACACAAGGACTGGTTCTCGTCCTTGAAAACAGATCATTACCTTCCAAAGAGAG
TGCCTAAAAAAACATATCACTGGATAATTTGAAGTATTGACAAAATAATAGGTGTGTTCA
GTTGTGGGCATTATCAGCCAGAGTAACATGAATCTGGGAAGGAGCTCAAACTTTATGTCT
AGATGGGGATATTGCTTGTGTTTTTCATCAGATATTACTCTTGATGATCTTGTTGTTATT
CTATGTTTTGTAGGGTGCTCTTATTTGGAGCTCTAAAAGACTGGTCAAAGAGGTTAGTTA
CTAATTTGCAGCCGTGGCATCGTTTGCTCGAAGAACTGTGCTTGACTTGTATATCTTATA
TCCATTTTGCTGGTGTAAATTGATCATTATATTCTGACCAAATGTCTTGATGCAGCAATG
GTAGCTATGTTTTTGTTCTTAAAGCCATGTGATATATATATGATATTAAAAGGTCAAACT
CAGGGCATTTGCATGATTGGATCCATGCCAATATAAATCAAGATATTGTAATTATGCTAG
CAAAAATCACAACACATTATTTTTACTCCGATGCAAATATGCAACCATCTAACAGGAGAG
TTCCATATTTCCTGTGCAGATTGCCTGACAACAAATTGTGTCATATGGTTATGCAGATAA
AAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAAGAAATCAGGTTCAGAGTCTTTCTTA
TTCAGTTTGAACATCGAGGCAAAACCACTTAGAAATGGTGGCACCAGATTCTGTTAAGAA
CTCAATAGTTGCAAATTAGTAACTGGAAACTAACCTTTTTGGGCTTTCTACTTGGCAGGT
CAACATCGTTGCAAGGAAAGATTTTTCAGCACAAGCTGAAACCTAAAGTAGTGCAAGGTT
TGAAAAATCTTCGGAATCGGCTTGAAGAACAAGAGCGAAAAAAAAAGTGACCGCTCAACG
TCAACCGATCAGCAAATCTCATCGAGCTGCTGTAACATCGGTTGGCCGAAGAAGGGGGAA
GAGAAGTGGTGTATATTTTTGTACAGGGGAGGAGCACATCGACGTTTTGGTCCATAAGTC
GAAGGTGCCAACTGCACAAACAACATGTTTGCGACCGCGATGATTGTTGATGAAGACAAC
ATGCTGATCAAGCATGCTGGCTGGCCTCATGGAAAGGAATATCTGGTCGTTGTAGGGAAG
CGGTCTGTAGGGAGGGAGACCACAAAATGTAGATTCTTTATCTTTTAACTCTTTTTTTTT
TTTGTTTATTTGATCATAATCCTGCAGAGAAAAAGCCAGGAGCTGTATAGAAGTGTAATG
TAGCTGACTCTCCCTTGGGGCTAGATGACAATATGCATGTTTATATTCAAAATAAAAGTT
TATATTTGCTGATCAAGTTTCACGTGATCAAAAATATACATATTTGTATCAATTGAAGCA
TTTGAGATTAATCCACACTAACTGGGAAAAGGAGCAGGCATGAACACAATATTGGCTGAA
AAAGGCTACCAGAAAACCCCACGAACAACAAAGGGGCGATGGAATTTATTCTCAGGTCTG
TTTCCACTTAACAAAGTTAACACGGAAAGAATACACATTGGATGGGTTCCCACAACGAAC
ACTGAGCACCGAAGCATAAAAACACGGACGATGTTCGGACGACACAATCAACAAAGATAC
CATGAGCTAGAGCGAGAGTTCAGCTGGTGCTAAGGGTATAGGTAGGCATCCCCTTGCAGC
ATCCTCCCTTGCGCCCTGTTTAACTATCTTGTATGTTTAGTAACAGCACTTCACTCCTGC
AAGGTTGGTTCAAATGGAGAGATTAGAATTTAGCAAGGCTCCAAGCCAAATTTCTCGAAA
TTCCGCTATATATTCAATAAGTTGGATATGCATAGTAAATGCCCGGATATATGTGTACGT
TTTTCTTTCATCTGCTTTTGACATGATTTGGTATTTCTAATGTGGGTGTTAAACAGGTGT
CATGGTTTCTAGCTCAGATCTGATACGGCAGAATTATGATTGCTAAGTAATCAGCAATGT
GTGTCACATAATTTTGAAAGGTGGCATGTATGATCATGGACTGTATCTGTCACTGACAAC
GCAGAATTTCAGCATAACAAATAAACACAGGCATTTCTATCAGTGAGTTTCGACTGAACA
GAGAGCATAACTCGAACAAAACTGAGAAGCAATGATTGAGAGTGTACAGAGCTTCAATGC
AGCAATTGAACAACAAAAACGACTCTGTACTATTTTTAGCGTTGAACCTCCATCAGAAAA
ATTCAGAACAGGGCTATAATTCAGCTTTTGCACGCCTACAGTTCAACATCATATCAAAGT
TGTTTCTTTCTTCCATTGTCAATTATCCTAGTCAAAACAAGATCAAAGTGCTCTAGCTAG
CTTTCTTTGCTAATATGTGATGGTTGCACAATCAGATGTAAATGCAGCAAGCAACAGCAA
ATGGTATGATATATCTCAATATTTTTTATGAACTATTTTTGGCGTCGAACCGATATATCA
GGAATAAAAACCAGAAGAGGGCTGTAATTCAGCTATTGCACTCATAATAATAGCTCAACA
CCATATCAATTTCTTGCACTGTCAAGTATCCTAGTCAAAACAAGACAAGCCTGGTCTAGC
TAGTCTGATGATTGCGCAGCAATAAGCAAGATGCAGAGGCCACAGTCAACACAGAGCAGC
AGATGCTACGAAATGAAATGATATAGTACCTCGTCATCGTCGTCATCCTTCTTGAGGCGA
GTGGTTCCGCCGACATGGTCGATGGGCAGCTTCATGTTGCCGAATGGTGTGTCGACATCG
ATCTTGCCCTTGATGCTGTAGCCGGTTCCCCTGCCCCTGATCATGTCCCAGACGGCCGAG
CCCAGGTCCTTGGGCCTGAAGGTGAATGGGATCTGCATCTTGGTGATCCCCTGCTTCTCG
ATCCTGGTGGAGTCGGTGAGCTCGGCCTCGACGATGCTGTCGTCGCCGAGCCACATCTCG
TACTGGAGCAGGTTGAGCCCGAGGTCGAAGTCGTTCTTGTTCTCGAGGCTGAGGTGGATG
GTGGCGGTGGTCTCCTCGAAGGAGAAGTGGTGGAACTTGATCTTGTCCACGTCCACGTCG
GGCTTGTAGGGGATGGGGATCTCGCCGGACTTGTCGAGCGGGATCTTGATGCGGCCGAAG
ACGGGCACGTCGACGAGGAAGACGACCCGGAGCAGGTAAGGGATGATGCTCCCGGGCTTG
ATGTCGGCGTAGGTGCTGCGGATGTCGTCGAAGTCGAGCGTGATGGGCACCTTGACCGTC
TCCTCGCCGTGGGCGCGGACGGTGCCGGCGTCCGGGATGAGGCCGGCGACGAGCTTCCGG
CCGTCGCTGTCGATGAGGTAGTCGATGTCGACGAGCGGGATGGGGACCGGGTTGGGGTTC
TTGATGAGGACGTCGACGACGAGGTCGGCGCGGTGGAGGCCGATGTGGGGCACGTGGATC
CGGGCGACGTCGGCGCTGGGCTTGCCGAACCCCACCGCCTCCTCGATCTTCTCCCCGATG
TCGTGGATGAAGTCCTTGACCTTGTCGATGAACCCGCCGCCGCCCTCCTCCTTGCTTTCC
TCCTCCTTCTTCTTCTTCTTGCCGGCGTCGGCGTCGTCCTTGTTGCTCTTGCTGGAGAAG
AGGCCGCGGTCGGTGACCTCGTTGGGGTTGTCCGACGAGGAAGACATGGCCGCTGGCTGG
CTGGCTGGCAAGATCGGAGCTTGCTTGCTTCAGATCCCGGCCGGCGGAGATGGAAAGTGG
AGATGCGGGGATCAAATGAAATCAAACAAGAGGGGATGGCGATGGACTGAGGAGGGGAAG
GGGATCCGGCTGGACGGAGCGAGTGGAGATCGCGTGCGGAGCGTGTCGCGGAGGTGGGGG
CCGGCCGGCAGGCGGCAGCTGGAGCGTGACGAGTGGAGGAGTAGTGGGAGCACGTGGAGG
TGCAGGGATGGGCTTCCACCTCACATCAGCTGGTCGGTCGGTCCGCTGGCTGGAGCCAAG
GAAAGGAAGGAGTCAAAGTCGCCAAGAAAGTGACTGGAATTTGTTTCCTTTGGACAAGGG
GAGGACCATACAGCGGATTATACCTGGCCAAACGGGCCCGGCTAAACAGGCCGGCCCGTT
AAGCCCGCCAAGACGGTACGACACGGTTCGGCCCGGCACGATTTAAATGGGTCGTGCCAG
GTACGCGACACGCCTCGAGCCATGCCTGGGCCTAAAGGTTGGTCACGCGGCCGGCACGGC
TGTTTATTTTTTTTTTACATATTTTTAATATATATACATAATATATGGCGCAATAGGCTT
AAAAACAAGCCCATGAGATTGAAATTGTGCAGCCCAGCGTGCTAATCGGGCCAAC