Contig Data
morexGenes
Links



Map Locations of contig_1563936 (5688 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1563936

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12718 1 2466 bp MLOC_12718.1 Available Available LOC_Os03g17950.1, FRAME:-2, EVALUE:0.0, 13103.m02147 protein expressed protein





CDS Structure of MLOC_12718






Contig Sequence (5688 bp)

>contig_1563936 5688 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATACGAAAACAACGAGATGCGTTTCTATCCGTGTCGAGGCCCTCGTGCCAAA
ATAAGGATAGAACCGCATCTTGGGCGTTACATATCAACAACGTGTTTATTCTTGATGACT
GAAGCATACAGGAGGCCTGATGTACGATTAAGTAGCAACAGCTGGATCTTCTTCATAATT
GGCGCTCATGAAAAACTTCATGCCCAACCAATCTGAAAAATCCATCACCTCTTCACCTTG
CAGAGATCACCACACCAACAATGCAGTACTTCCACCTCCAGAGGCAAACTCACACTCTTC
ATTTTCTAGGCCTAATGCTTTGATCCGAGCAAGGCAAACTCATACTGACTATGAACGAAG
TGTGACACACTGAGGCGCGGGTGTTTTGAAGTATGGCTAGACGATGGCGCAGAGTGTTTG
AGTGCCTCGTTTTATAGGCTCAAGCGGATGTGAAGGCGAGAAAATAAGGCACGAACAGAC
GAAATTTAGCAGGGAAAAAAGAGCGCGAACATAGATGAAAATTAGGCGGGAAAATAGAGC
ATCTCAACGATTCCCAGCCCTGAAAAGAAGCGCCGGCAGCATAAAATTTTATCGCCGTCT
AGCGCCACTTTCAGCCCCTGGAGCTTGGCCGGCCGCCTCGCGTGGTGGCGGCAGACCCCA
GCCGCATCGGCCTGTGACGGCAGGTGTCACACGTCACTTGGCGCGCGTGCCGCCACGAGA
TGTAGTGGTCTTTTCTGCAAATCCATACTGCATGTGGTCCTTTTCCATAATTCGACTCAC
ATATTGGTCCTTTTGAACAAAAATTCCAGTTCTTGAGCGCTTGGCTATCCGTCAAGTATG
GCATTGGCCGCAGATTTGAATCTATCTCGTACCAAAATAGCTTCACATTGTAAAGAAGTG
GTTAATGACTTGATTCGAGGCACTGATGAGCATTACGCTTCAGTTATCTGAGAGATTAAG
ATGAGAACCAGTAGCTTTTTCATGTTCCATTCATCATGAATGATGTTTATTAGATCAGGA
GGCACGCTCAGCTAAAACACGCTCTTATGTTATCTGAGTGGAGAGATGTTTGGTTTCTCA
GCCCGCAATAATCCCTACTCCCTCCGATCCGTACTAAAACTGCGATAATTAATATGAATT
GGAGGGAGTATGTAATTCCTGCAAACATTTTATTGGAGTAATAAAGCACGTGTGTTTATC
ACCAAAAAATCTTGCATAAAGTGGTCACACGTTCATTTTTTGTATTATAAAGAGATGACT
AATGAGCAGATGTAGATAATAATTGATTCACTAAAGAACATGTAGAGAAGTGACAAGTAT
TTATTTTTCTTTCTCAATAGGAATTTGGTATAGGACGAAATTCAAGGCACACAATCATTG
CATTTGAGGAGTTTGGACAGTCAGTGATTTTAAGATACAACTCAGTAATAAATTTCAGGT
GTCCCTCGACTAGGGCATATCGCATTCTAACACTAGGCTAGTTCAAGACATTGCTGGTGT
TGATAACAATGTAGCACCAGCAACTGGGACAGTCATAATTAATCTCCTTAATGGTGGTAG
AAACCAGTACTACAACAGTTCCCTCCTGGCAAGCAAACAGCCCTTCTTCAGCTCTCCATG
TCTGAATCAAGAACAGAAAGGATGTTCAAGGCAGAAGACCCGATGTGGGTTCCCCTGACA
ATACCGCCATAACCAACTTTGATTTGGTGGCATAGAAGCAAAATGGCGTCCCACAGTGCT
GTTCTTCCCTGGAAAGTGAAAACATATGTGTAGAACATTAGCATCACTTGATAATGAACT
AAATAATTAAATTTCTTTTGAGTTTAGTATAAACACTTTGCAACTTTAGTACCACGCAAA
GTTGCTCAACTCAACTTATAAAATTAATGTGTGTCTCAACAAACTTTTCCATGTCAAAAT
CATGCTACATACTCGTACCATTAATTTGTTACTCCCTCCATTCCATAATGTAGTCCATTC
CATAATGTAGTGCGCCCGCGCTTATCGAGATTTAAGTTTGACAGTAAATTTGACCAATGC
GGGCGACTGCGGTGGGAGCAAAAATTACACCATTGAAAACTTCTTTCGAATACGAATTCA
ATGGTATAATGTTTGCTCTGTCCGCAGTCACCCACGTTGATTAAATTTATGGTCAACTTT
GAATCTCGAAAAGCGCGGGCGCACTACATTATGGAACGGAGGGAGTATCATAATTCACCA
TGTTCACACCAAAATACAACCAGGCAAGGGGTAGAAAGATATACAATTGCTGCGCCATAA
CATTTATTTTCAGACACTTTTAACATGAAACATATCTCAGCTCTTTCCCCTAGATGTATA
ACACATCCCACTGACAGCCTTTTGAGATTGTTTCTCGTTAACTTTCAGTGTTTTTTTTTT
GACAGCGTTAACTTTCAGTGTTGCGTGTCTTATTAAACGCTCTATTTCATAAATTTCAGA
ACTCATGTTCAGTGATTAGATTTGGCAGTTAAGGCAAAAGGAATAATGATTGATTGATTG
ACAGAAATGCTTGAATCACCTGAAGAGAAAACTGCAGTTTCTTGTCCCAGTATAGAGCAA
AAACTGGAGGACTCTGCTTGCCCACAGCTAGCACAAGAGCTCCTGGGTGAATAATTGCTG
GAACGCCAGATATCAAAGCAACATACTTCTCCGGAAACCTCTCTTTCGGTGGAAGGATTC
CTAGAAATAAAGGATTTTTGCTGGACTGGGCACCGGAGTAGGAGGTTGGATCAACATGAA
GCATCCACTTTGGATGTTCAAGGAAAGCAGCAAACAAGTAGAGAAGAAGGTGTGAGTCAG
TTGGCAGCTCACTAGTCCATTTTTTCTCTGATTTACCATAGCCATCTCTATAACCCATGT
AATCATAATTCTTCAAGCACGTTCCTTCAGCAAGTTCTGCGTCAAGATACAAGTAAACAA
GTTGCACCGATATCAATATCTGAAATCACCCTATTTATGACTAGGCCTAAATAGCACCAA
GCGACTGAAGTCTCTATAGTTTACTTTTCCGGATAAAATAATTAATTACTCACCTTGAAC
TCTGTGAACAGTATAATCAGCACGGACGCTACTCTGTGGCAGCAAGCCTTTTATAAGCTC
TCCCTTCATCAGAGCGTTAAGCCTCTGGTGCTCTGTAATTGCATCGATACATGCTTGAAT
AGCTGGAAGGAGGAGGTTTGACTGTGGCTGTTGTGGACTACCGAAGGTTTGGGCTGTATA
GAGAAAAGAATTACTAGTAAGTCGGGAAGTCCATGCCAAACTTAATGAGTAGACTAACTT
TAACCACATCAAAGAGCCTATGCTGCGCAAGTTGATGGAAACATATGAAAAGACAAGACT
AAGCAGGAAAGTTCAAACTACACCAGCAACTCACCAACAGGAGCATTACGAGACTGCAGA
AGTGCACCCCGCATTTGATTAAGAATACCATCCTCATCAACGGTGACAGTTGGCTGCCAA
TCTTTAGTCCCACCAAGTGGAGATAAGCTAATCGGTGGTGTCGTGCTTGGCAGATCGCTT
CCAACTTGGCTAACATTAACTGAAGCTCCAATACTAGCTGTTGTTTGCTTAACCTAACAG
AGCATAATAAAAAAGATAAAATGGTGATTACTGAACTGGACTAGAAATATAGGTTCCTGC
AAAACAATGCCAATTAATTAGCACCTGGACATGGCTTGATTTAATCTTTTCGACAAGCGG
GTTCATTAAGACTGAAGAGAACCACTGCCTGAGATTGTTTCGCCACTGCTCGATCTCAGG
ATACACGCCGAGATTTTCAAAGGCATCCACTGCCTGCTCCAGGGACATTGGCGGTGGAAG
CTCACCCTCGCCCTTTTTCGGAGGCGTGCTGTACTTCTGATGGGAGCCAGGAGACATCCT
CACAGGCCTCAAAGGTGTGCTCCGTGTAGCACCAGAAGGGGTGGTTGATGTGGTGACTGA
GACAGGGCTGGCAACACCAAAGCCTGTGATGGTTGCTGGAGGGGTTGCAGTTTTACAGGC
TGAATCCGTGACATTATCAATATTTTCATCCAAGGTAGCCAAGAACTGGTCCAACATTGC
CTCGGTTTGTATGCCCTTGGCGCTGCCTGAGCTTTTCCTCGACCATGGAGTTGAAGGGGA
AGAAACAGGCTTCTGTAGTGGAGTGGAAGGCGACATCTGTAATGTGGTCAATCTCTCACT
ACCAGGGCTCAAATGGCTGGAGCCAATCCTTGGTTGCACCCGTGACGGTGTATAGCTGAA
CGAAGATCTCCTGATAGGAACAATTGGCTCTGAGGGTGTTGATGGCTTTGCCTTGGGAGG
CTTCTTGGTTTGCTCACCCATGGGAGATCCTTCTGAACCTGTGGTCTTTAACCCAAGAAG
CCCCAGTTGGCGTTCGGACAATACAACCTTGTCCTCCTTGGCCAATGCCTTCCTCCCATT
GTATAGCATCAGTGCCCTGAAGAACGCTGGCAGTGTCAAAAGTGCGACAAGACCCAGAGC
TGCCTCCACCAACCTAACAGCAAACACTGAAAAGAGCACGACAGGTTAATTGCAGGCACC
TCTAGCATAACAAAGCATCTTTATAAGACCTAAGAGTGTGAAGTTTTACAATGATCATTA
GATAATGTATGGCATTTCTGCCAGCAACTTTCGTGCGAAGCAACCAGACTAGCCAAGCTT
GGCATTTCTACAAACACGTCATGAGCAACCAAGCACAGTGCTGGCCCGCCCATACCGAGA
ATTTTCAGAACACCAAATCTGGCATGGAGACAAGAGAACTTACCGACAGCAGCCATGGAT
AGATCCGCGCCACCAGCGACCTTGAACAGCTGCCCCTCCCTGCGATAACAGCGAAACGTG
AGAACCCACGCGTTGTAATGAACTCATGATCTGGGGTTCAGGGTTTAGATGGGAGGGAGG
GGGGATGGAGGGTGGGGGCGTAGATTCAGGCTTACCGGGACGACAGGGCCATGAGGGATG
AGGCAGATGCGATGGGGGAGAGCGCAAGGAGGAGGAGGACGGGGAGGGAGGGGCGGACGC
TGCGGGAGGCGAGCGCGCGGGTGAGGGACGGGTTCTGGTACACCGAGAACTTCTCGCGCG
GCTTGCCGTCGCCCCCGCCGCCTCCCGGCGAGCCACCGTGCCGAAACTCCATCGCCGCGG
GCGTTGCCGTCGCAGTGGGCTGCCTGAGACGATGCGATGGGCCGCTGAGGGTTTGCAGCG
ACAGGGAGCGAGCTGTTTGAAATAGGAAAGCCACTGCGTTCGAAATTGAGGGGAGGCAAA
TTGGGGGCGGGTCCGCGTCGCTGCACCGGATGCCGGAAACCGGTCGAAACTCGAAAACCT
GCACAGTTTCACCTTTCGCCTTTGATTTGAATTCTACTCGGAACGAATCGGTACACGTAA
AACCAATTCCAGTCTTGCCACCCATTATTTTGTTTCGCGTCCGCGTGGAGCCATTTTCAG
CCCAAATTTGGAACTGAAATGCGTCGGTGCGGACGCGAAGCAGACGCGCGCGCCTTCTCG
ATGTCCGTCCCCAACCACCGTGGTCAATATAATTTATGACGACCGTCATCCTCGGGTCCA
CGCGTCAGCGACAGCGAGAAGGAAACACGGCGCAAGGCCGACGAGGAGGCGGCGTACCAG
TAGTAGCTCGCGGAGGCCATCGCACTGTCGGCCGCCGGCGACTGCGTC