morexGenes - Barley RNA-seq Database

Contig contig_1563877
Source Contig contig_1563877
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563877 (6325 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563877

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12686	2	2510 bp	MLOC_12686.1	Available	Available	LOC_Os06g12610.1, FRAME:+1, EVALUE:0.0, 13106.m01381 protein auxin efflux carrier component, putative, expressed
CDS Structure of MLOC_12686

Contig Sequence (6325 bp)

>contig_1563877 6325 assembly3_WGSMorex_rbca.fasta
ATCACGGGCACGGACTTCTACCACGTCATGACGGCGATGGTGCCGCTGTACGTGGCGATG
ATGCTCGCGTACGGGTCCGTCAAGTGGTGGCGGATCTTCACGCCGGACCAGTGCTCCGGG
ATCAACCGCTTCGTGGCGCTCTTCGCCGTGCCGCTGCTGTCCTTCCACTTCATCTCCAGC
AACAACCCCTACACCATGAACCTCCGCTTCATCGCCGCCGACACCCTGCAGAAGCTCATC
GTGCTCGCGCTGCTCACCCTCTGGAGCCACCTCTCCCGCAACGGCTCCCTCGAGTGGACC
ATCACCCTCTTCTCCCTCTCCACGCTGCCCAACACCCTCGTCATGGGCATCCCGCTCCTC
AAGGGCATGTACGGCGACGAGTCCGGCAGCCTCATGGTGCAGATCGTGGTGCTGCAGTGC
ATCATCTGGTACACGCTCATGCTCTTCATGTTCGAGTACCGCGGCGCCAGGATCCTCATC
ACCGAGCAGTTCCCCGACACCGCCGGCGCCATCGCCTCCATCGCCGTCGACCCCGACGTC
ATGTCGCTCGACGGCAGGAGGGACATGATCGAGACGGAGGCGGAGGTCAAGGAGGACGGC
AAGATTCACGTCACCGTCCGCCGCTCCAACGCCTCACGCTCCGACATCTACTCGCGCCGG
TCCATGGGGTTCTCCAGCACCACGCCGCGACCCAGCAACCTCACCAACGCCGAGATCTAC
TCGCTGCAGTCGTCGCGGAACCCCACGCCCCGGGGCTCCAGCTTCAACCACACCGACTTC
TACTCCATGGTGGGACGCAGCTCCAACTTCGCCGCCGGGGACGCGTTCGGCCCGGTGGTG
CGCACCGGGGCCACGCCGCGCCCGTCCAACTACGAGGAGGACAAGGCCGGCAACAACAAC
AACAGCAGCAACAACAAATACGGGCAGTACCCGGCGCCCAACCCCGCGATGGCGGCGCCG
CAGAAGCCGGCCAAGAAGGCGGCCAACGGGCAGGCCAAGGGCGAGGACGGCAAGGACCTG
CACATGTTCGTGTGGAGCTCCAGCGCGTCGCCCGTGTCCGACGTGTTCGGCAACGGCACC
GAGGCGTACAACGAGGCCGCCGCCAAGGACGTCCGCGTCGCCGCCGCCTCGCCGCGCAAA
GGTTTCCATTTCCTAGCCACTGATTACCGGCAAGTTAATTAGTACGGCCGCTAATTAATC
TGCTCTCTTATTGGTAACTGAATGAATCAATCACAGCGGACGGCGTGGAGCGTGACGAGT
TCAGCTTCGGGAACAAGGAGAGGGACGCGGAGGCCGGCGACGAGAAGGCCGCGGCGGAGC
AGGGCACCGCGGGCCTGGTGCCGGCGCCGACGGCGATGCCGCCGACGAGCGTGATGACGC
GGCTCATCCTCATCATGGTGTGGCGCAAGCTCATCCGCAACCCCAACACCTACTCTAGCC
TCATCGGCCTCATCTGGTCCCTCGTCTGCTTCCGGTAATGGTCACTCCTCCCCCAGCGTC
CGCCGGCGAGGTTACGTCAGTTACTGCCGAGCAGTTAACTCACTCGTTACGCGTGAATGC
AGGTGGAACTTCGTGATGCCGGCGATCATCATGAAGTCCATCGCCATCCTGTCCGACGCC
GGCCTCGGCATGGCCATGTTCAGCCTCGGTGCGCTGCTCTGCTCTGCTCTGCATCTTCGT
GCATGCATGCATCATGCATGCGAGCCAACCGTGGTTCATTTGATTCATATACGCCGTGGT
GCTGACATTCGCATGTGCAGGGCTGTTCATGGCGCTGCAGCCGCGGATCATCGCGTGCGG
GAACAAGAGGGCGACGTTCGCCATGGCCGTGCGGTTCCTGACGGGCCCGGCCGTCATGGC
CGCCGCCTCCATCGCCGTCGGCCTCCGCGGCACGCTCCTCCACATCGCCATCGTGCAGGT
ACGGCACAGAGACGATGCCCGACCAACCGAGCCGCACAAACCAAACACAGCACAGGCTTG
CACGCTGACAAGAAGCCGCCTTTCGATGAAAAAAGAATGGGGGGGACACCGGTCAAGTGG
CCGGGCACGCCGATACGACGCCATGAACGCATGCACTCCGCGCTGTTCCCTGCGCCGGGA
AAGCGCGGCAAGCGCCCGCTTTCGCTTTCGCTTTACGCTTTCGCACGCAAGAGCACGACG
CGCACAGCTTGGCTCTGGTTTGTTTAAGCTGCTCGCTCGTTTTTCTTTTTGCGCAGGCAG
CGCTGCCCCAGGGCATTGTCCCCTTCGTCTTCGCCAAGGAGTACAGCGTGCACCCCGACA
TCCTCAGCACGGCGTAAGTGCATGCAGCCGGCGACCATGCCCGTGTCCCTGAATAAAAAC
CATGAGATTCTCCACGCCTGCGTGCGTGCATTCTCGCTTGTCTCACCCGCCGTTCTCTTG
TGCATGCAGTGTCATCTTCGGCATGCTCATCGCGCTGCCCATCACGCTGGTCTACTACAT
CCTGCTGGGGCTGTGAGCTGACGGAGACATGCGCGGCCGGGCTGCAACACCATGCCGGCG
TGGCGTCGGAGACAGACAGAGGAGGCGACAAGGGAGCTGCAGCGGCTCCATGCGCCTGCC
GGGGACATGATGCGTGCTCCTGCACGCCGGAGGCTAATTACTAGGATTCTTAATTAGGTG
TAGGGGTCAGATGGGGTGAGGGGAGGAATGTTTAGGGCAAGAGTTTGGGTTGGTAAATCA
ATCAAAGGTTGGGGAGGCAGAGGATCAATCCGGTTTGGGGATTTAGAAGGGGTACTCCTG
CCATGTGTGCGTTGGGAGAGGTTTCTTTCCCTGGAGGGAGGGTGGCTGGGCTGTAAAATG
GGTGTCAATTTGATGAAATTAATGCTAAGAGCTCTTGTTCACCTTACTATATGCCACCAG
TACAATTTTTTCCCATGTGAATTAGGGCTGTAATGTTTTATCAACACTTCTTTAGGAGAG
AAGATGGTGATGCAGCATGAGCAGAGCATCCTTCTCCATGTGTTGGCCTAGCTATCAGCT
ATTGATGATGTTCCTAGCTCGGGGCCAATTTGGTGCCAAGGGTTCACGCATCAACATCTT
GCTAACCGAAACACCAATCGCGTAATAATTAGGTTCATTGTTTCTAAACATAATTTGGAC
GTATACAATTAGATTTGGATATTTATTTCTTCTGTGGCAGAGTAGTACCTAAATCTCGAG
CCACCTAAATGTTTAAAAGGGAATATGTTATACGTATTAAAATTCGACATTATTGCAATA
AGGAGGCGTAGATGGAACTTCTTGGATGTTTGTCTAATGTGGTCGTTCTCAAGGCCTAAT
TAGATTCCCTTTTTATTATTACATACTACTTCGTATTATGTACTCCCTTCGTTCGGGTTT
GTTGAGCCCATTCAACAATAGATTGAAAACTGCCCTAAAAAAATAGAATGAAAACTGTCT
AGAAAATAGATTGAAAACTGTATCACCCAGGCATTCACTACCTTATTTTAGGACTACATT
ACATTCATCATATGATTGCTCACGCGCATTTAGACTCATGCATAAACTAAAACAAATTAA
GATAACAAGAAATGACCGGTATACATATCCATATAACTGTAAAAGAATGCGACCATAAAA
TATTGAGTGGAATAGACAATGATTTTGCCGATTTTTTTTGTCTAAACTAGTCCTGCGATG
TAAAAACCGTCCATATAACGCGTGTGCGGGAGAATATAGCGTTTCAACGGTCACGCAAAA
ATATTGCGGCGGTAAAAAGGCACCAACACAGTGGGAAAAACTGCATCACGCGTGGTTTAT
TTGGTGCGTCCGCTCTAGCATGCTGAACAAGCGAATATCGCGCGCGAAACCCCAACCGCC
ACTCAGTGCTCCGACCACGCCCGCCTTCGCCCCGCCCCGCGCCTCCGCCAGTGAAATTTC
TGTGATGGACGGCCGCACCGACACCCCCTCAACCCCTTCCTATGCCCGCGACCTATCTGC
CTCCTCCGCCGCCAATGCACCGATAGATCTCTTCGCTCCCGGTGGTCGACGATCAACAAA
GATTGTCAAAGATGGTAGGCGGCAATGACGTTGGTTGACAAGATAAACCCAAGTGGCACT
AATGATAGGGATAGGGTAAGTGTCATTTCTTTATGTTCCATGTTCATGCTTCATCTTTTT
TGTTTGAGGTGGTAGCTTGTTGTTTTGTTTGTTGCACAGTATTGCACAAAGCTTGTTTCG
AGGAGAAGAAAAGAAGACCAAGAAAGGCAAGGTTAAGAGAGGGAGAGTATTTGTGTTGCC
CCATTGAAGTGTTGAATGATGAGGAGAAATGGAAGGAATGTCCTGATGATGACGAGACCA
AGAAAGACAATGCTGATGCGGTGGTCTTAGATGATGACGAGGAGGCATCAAGTGATGGTG
CAAAGCTAGATTGGCCATGGTGGTCTTAGATGATGATGATGACGAGGAGGAGATCAAGAA
AGACAATGTTGTAGGAGAAGAAATTGGCCATGTAGGAGCAAGCTAGTTTCTTGGAATATG
ATGGGCACATGATGCATGGGAGCTACCATGGGAGGCTTCGGAGGCATGTAAGCTACCATG
GGAGACTTCGGAGGCTTGTGAGCTACCATGGGCGGCATGGGTGCATGGGAGGCACGAGAG
CACCTACAGGAGGCACGAGTTTTTGGTCTCTCATGGGAGGCATGGGAGCACCTCACACGA
TGCCTCACAATCCTTCGCATGATGCCTCACATGCCTTTGGAGATAATGCAAACAATGTTC
GAGGTTCGAATGACATTGAGGTGCTTGAAGATTATGAAGAGTAGGAAAAAGAGGAGGAGG
ACGAGAAGGAAGAAGAGGAGGAAGAAGATAAGCAAAAAGATGGAGCATGATTCTTGATGT
TTCATTTGTTTTTGTGAACTTATTTGTCATGAATTGCTTGTGGTTAGATGATTTTAAACT
ATGTCATGTATTTGAACTATCCTATGTTGCTCAACTCATCATTTTGCAAATTTTAAATGT
TCAAGACCATATTATTTTAATTTTCACAAGTTGATATATGACGTTTCATATGTGACAAGC
GGCGACTAGGCGCGAGCGTTGTATTTTACCGCATCTGGTGAAGCGTAAAAGCGACTCGTT
AAATTTGGAGCATCTGGAAAATCTACCACACGTGCGCCCGTGCGCTAAAACACTATCTCG
GCGCCCAAATTTTCTTAGCTCACCACGCAACCGTGAATCTATTGAAGATTCTCTAAGGGC
CTCTTGGATTTAGGGCTTATTTGAATTGAAGGAATTTAATATGAATTTCGAAGGATTCCA
TTGCATAGGAATGTTTCATATGGAAGCCCTTTGGATCATAGGATCGAGGTCACCAAATTC
ATATGAAACATATTCCTGTGCTACACATTTCACAGGAATCTCAAGATGAGCTCAAACATC
ATTTTTTTCCTTTGAGAAGTCCAATGCACTTAAGGCATCTCCAACAGCGACTCCCTTTGT
CTTCCCCATGTATGCCCGCTCGTCTGGAGTGGCAAAGAGGGTGCTTCAGCCGGAGGGGAA
GGGGGCGCCACCACTTCCGTGGAGCCCAAACGGGGGTTGCCGTTGGTGTAAGATAAAGAA
CTGGGCAGACCACCGGTTGTACAAGCCGACGATGCATCGGTGGTGGCCCACACGGGACAC
AAGGTGCGGTGGCCTCCCACTTTCTACTTTCCCTCCATGTTGGCGGCAAACACGAACGTG
CTGGCCACCGACTCCTCAATCTCCAAGCACCCGACTTCCTTTGCCGTTAGGGAGAGGTTA
CGAGCACGTTGACGGTGGTTGGCACGGTCGCATGCACGGGAGGCGCGGTACAACGCGCAT
CACCCACGATGGCCGCTTCAACGTGCTCCCCCGCGTGCCTCTGTGGAGCTACCCTCCACT
CCTCTGCGAGAAGGATTGGAGCGACGAGTCGCTGAACCACACGCTAGCTTGGAGCTGCAT
CTTGCTCCGTCGGGCTAGGTGAAGGAGGTGGACCAGCAAGCCGCTTTACTCGTATCCGAC
GGGCTCGGTGGGCAACCCATCAACCTTTTATTTCGAAGAACTACTTGATGACCCACAAGT
ATAGGGGACCAGTCGTGGTCCTTTAAATAAGTAAGAGTGCCAAACCGAATGAGGAGGAGA
AGGAAATGATAAGCAGTTTTCAGCAAGGTATCCTGTGCAAGTCCTGTAAGTAATAGTGAT
ATATAGTTTTGTAGCAAGATAGTTCGTAACCGGTGAAAAGTAACAATAGTAACAAAGGTG
GAGCAAGGTAGCCCAATCCTTTTTATAGCAAAGGACATGCGTGGAAGTACTCTTATATAA
AGAAGTGCTCCCGAGGACACATGGG