morexGenes - Barley RNA-seq Database

Contig contig_1563645
Source Contig contig_1563645
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563645 (6664 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_1563645

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12581	1	1387 bp	MLOC_12581.1	Available	Available	LOC_Os10g11500.1, FRAME:-2, EVALUE:1e-92, 13110.m01042 protein SCP-like extracellular protein, expressed
CDS Structure of MLOC_12581

Contig Sequence (6664 bp)

>contig_1563645 6664 assembly3_WGSMorex_rbca.fasta
CGTACTGTCAAGGGGACTCTCAAGTGAGTAGCTTGATCGTATGGTTCGTTGAGAGCTCAA
CCCATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTGTTTCTCTTTGTGAGTT
GTCGAGCTTATGGTCATCTTCATGACAAGTTTAAGTTCATCGAAAACTGAGTACATATGC
ATCATCTATGATGTTTTCGATGTTGGGAGTTTTTGCCGGTTCTTCTCGCGTAGTGCAGAA
GTCTACTTCCTCCTGCATTCACTCACGATGCACTATGCGCATAGCTCGATGCCGCCTCTA
GACATCCGGCTCGTTGAAGCAAACTTTTATAAAACCCAAGAGTTTATAGAAACTGCGGCA
TGGCCGGAAGTCATCAATGCAGGCTAGGGGATGCCGCCGATCACAACCTGTGAAGTAAGT
CACTGTCTCGAAGGAGAAAACACTGATAAGGGCTTGTAAAAACTCCGTAGAGTATTAATG
ACTGCCGAATCCAGAAGGATCAACCAAAAAGCTAAATGGCTAAACCGACAGGATCCCGAA
AGACCCGCGAGAGATACTGCTCTGCACGCGTTCCAGCGTGATAAGCATGCGAGTGCCTCA
AACCAAACACGAAAACTCTTTAGTGAAAACCTAAGGAAAAAAACAAAGCGTAAATTTTCT
TTAGGCAAAAGGAAATTTCCTGTGAATGTATTCCAACCTATAAATATACTTTTCCAAGGA
ATTATCGCACCCTAATACACATAAAAGCATGTCAAAGAGAGAAAATAGGCTAATGTTTCT
AAAATGAGTACTCCCTCCGTCTGAAATTAGTTATCGCACAAATTTATAGAAAAAGATGTA
CCTAAAACTAAAATGCCTTTAGATACATCCATTTCTATGACGAGTATTTTCGGACGAAGA
AAGTATAAAATATTAAAAAATATATAGAAAGTCACAACAACTGTAACGTCACTGGAGGTG
TCTAGTAGTATATCATAGAAGTAGGATAAGGACATCTACCTAATGGCAACCGATCGGATC
ATCATGCTTCTATAATAGTCATTTGACAGCTATGATAGAGAAGCCGGGTCAATACACAAG
TTATTCAAATTCTGACATGTTGTCCCGGCGGCTAAATCAGCTTCTGTTTGGAGTCAAGAC
AACGAAGGCTGCTGCCTGGTGGAGGATCATGTGCGTGACAGCGTAATCGAGTTTCTTCCT
TCCTCATGCAGCTCATCTCACACAAAAAACGAACTTTCAGTGAACAGCTTGTTGCAGTCA
GAAGATCCCCATCATCTATAGATAAGCTTTTAAATGAGCCGTGGAAAATTCAAAGAGCAT
TTAATATACTCCCCCTTTCCAAAACCCTTGTCTTAGATTTATCTAAAATAATTAAGCAAA
TCTAAGACAACAATTATCACTTCTAGGACGGAGTACGAAATACACCAAGGGAAACAACAT
GAACATGCAATGAATATAACCCCTGCAAAATACAGACCAGGCTCTGCATTATGTAGCCAT
AGCGTGTCGTGTCACCGTTCCTCCCTGTGACGAAAAACAGAGGTGAGAGGGAACACTACG
CCGCCTAGATGAACTCCAATCTTCGTATGGATCTAATGTCTGCCGCATCAAGAAGTATTC
CAACGTATCTAAATATATCCGTCTCTAGAGGTTTAGCCTCCTTTTCAAAAAACAAAAAAA
AAATCATCTTTAGATAAATCTAATACAAACAGTTTGGAACTAAGGTAATAGACACCCATG
CCAAACTATCAATCACACCAGCCTATTATTTTCGTCGTTCATTTGAATTGAAGTGATTAG
AGCATCTTTTTCTTTTTGAGGTAGCATCTATAGTTGCACACCCCAAAATCCCCCTCAAAT
GTTCGGACGGATGGCTCCGTCAATAATCCCAACTCAGACGTGCATCTCAAATGGACCTTA
AACGTCCAGACTGATCGGCACAACTCATATCCAATTCAAATGTAGGGTGGATATGGAGAG
GCCCGAGGCTCGACCAGGCGCGTTCGCCACATCGGACCCGACAGGCCTACCCATCATAAA
TTGTACCAAATCCATCAAACTATTTCCCTTCCTCCCGCCTCCCTCCATCATTTTCCACCC
TTGAGCCCTCGCCATCCGCCGCCTTGCTCCCCATACTCATCGCTGGTACCGATCCAACGC
CCTACATGCCGTCTAGCTCGTTCCCGATCGCCTCGACCGGGGTAGCGGTCACCTTGTCCA
TCGGCGTCCCATCCTTGACGATGTATTGCAAACAGGAGAACATTGCCCGGAGGAGCGGCG
ATGGAGGTAGCATGAGAGGGAATCGACGACGTTGCAGAAAGAGAATGTGTACATCGGTGA
CCACCCCCTCACCTTGGCTGCGCCGCGCTCAAGACCCCGCATGCCATCTAGCCAGCCATC
GACAAGGATCCTGCCGTTCGACTGGGTTGGGATATATAGAGGAGGATCCGACATCCGGTT
GAGGCATTCCGAAGAACTTTCCCTCCACATAGATGCCGCTGGTGGACGTCTGTCACTGGC
CGTAGCTCGTTCCGGCACGGACAAACATGCACACTGGTGGCGCCCAAGCTACCCACGGCC
TGTTCGACGAAATGACACAACAAGACTATATATGATATTGTTGCTCCTTTCCGATAAACT
TTATAGTGGAGCTGCCCCCGGGTCGTCGTTGGTGAATAGGGCGGCGATCCCACAGTGAAA
AGAACCACCGGCACCTCACTCCTCTCCTCCCCTCGCCGTCGCCGGAGGATGCCACCGTCA
AAGCTGCACGGTGTTGGCGGCTGCGGGCCGGTACTCGTTCCAGCGGGGCGGCTTGATCTA
GGGCGGCTCTCAATCCATGTAGGCTACACGCCACATGCCACATGGGCTAGATGCTGGCGT
GGGGCTGCAGAACGTTGATGCTTTAGCGGCCACGACTACGGCCGGTCATTGTCCATGTGT
GCTGGCCCTGTTTGCTCCGCTGCGGCATCTGGCTTGGCGTCGATCCAATAGAGACATGGT
AGCCACATCTTCTCCGATCAACTAGGTGGTCACCGTCAGTAGACCTTCGCTGCCTCGCCC
CACCACCAGGGAGCGACTCTACCGAGCACCAAGCAACCGGCCCGCCCCAACCTAGATGGG
GCCAAACGGGCCTAAATTTGGGCCGGGCGGGCGCTGCAAGTCACCAGCGTCACCGCGTCA
CCCTACGACCAATGACCATGTTGCCGCATCGAGATCCACTGTGGTACACGACATCGTCGT
TGTCGGGCCACACCGTCACTGGCCGAAAGGCACTGTCGCGAGCCGCCACAATCCGAGCAG
GGGGCCGCGCACGGGGATGACTGAATGCCAAGATTGTGTGCCACGTGTTTGGTTTCTTGC
AATGGTGGCCTCGACAAAAAGGGACGGCATCATTGGATGACTGCATTTATGGTGGTGCTC
CTTGAGTACTGAGTCTTGACTCTCAGGGTGAAAACCCAAGGTTTGGCCTTTATTGGTTGT
ACCTGGCAATGACCTTGTTGAAGGACATTCTTTTTTGGTGAACTCGGACTTTCTCCAGGG
TGAGAACCCAAGATCTTCGATGAGGCAACGCCAAAGCTTGTGCATTGTTTTCTTTTTGAA
GACGTTGCTTTTGGAGAATCTCTTTTTTAATCTTGGTGTTGTCTTCGCTGGTGGTTAGAG
TGTTGATGATGCTAGTGATTGATCATCATGGTGGGTCTTTTTTCTTGTGCTCTTTTTCTT
TCTCTTTTTTGAATGTGTGTATCATTGATGTCTTGGGTCATCTTGTTGGTATAGAGACCG
AGTGTAATTGATATCTTCATGATATTTATATATTTCCTTTATGAAAAAATTTGATCAACT
TTGCATATGTCATGTTTAATGTTTTACATAGACCGCGAGTTAATTTCGGACATGATCAAT
ACTTGAAAACTATGATCATGTAGGAGTTTATCATATTGGACACATGATTAATAATAATCA
AGATCTGGTTCAAATGCACTATGAGTTGGGGGATCCAACTTGCCCTTCATTTGATGTTGG
AACAACATCAAATTTCAATCAGAGCAAGAAAAAAAATAAGCCAAAGGCGACAAAGACATG
AGGTCCGACATTCTCAACTGGCTGCAATGGAACTTGCTAAGGCTTCATTCAAAGAAAAAA
GAATGGAATAGGACGAGGCGGTGAGCTTTTGGCAGATCATCTAGAATCTGATCGGACTAA
TGCGCAGGTTTGGTTTTCCTTTCTGATCAATCGAATGGCTTTTAATAAACCTTTTTTTAA
AAAACATCTTGTTGGTCAAATCTTGGTTGACCACACCGATGGATTTAATATGCGGCATGG
AGCAAAATGAAAAGAAGTTATTGGAATAATATTTGAAATAAATATTAAAAACAAAAGTAA
TATGTGAAGTCGCATCCTATTCCACCGGTCTCCATGCCTCACAATGGGCATTGGAACATC
CTGTTCCGCCGGTCATTTGGCCAGGTGGAAACTGTAGAGTGGGTTAGTTTGCGGGTGGCC
GTCCCTGTGCTCGCTGACTATCCGGACACCGAATCATGGCATTTTGCTTCTTCAGGTTTC
TTCTCTCTCAACTGGACATATCTTGCCCTATGATGGCGTCTAACCATAGCTTGAACCAAC
CTGCTCTGAAAAGCACCCTCTTACCCTTGAAGATCAAAAATTGTGTTCGTCAATTGCTGG
GAGGAGGTGATCAAGAGGCATGACCCTGAGAACAGTTGTGTCCTCTTTGTGGTGATGTGG
AAATGAGAACCGACATAATCTTCTTTTGGACGGCGGCTAGAATTCTTTGGAGTTTTGTTC
GTGAGGTATGAGGTATTTTTTCTGTCTGGTGTTTGCAACATTGGCATGGTCTTCATGGAT
AACATACAATAAAATGGTGATTGAACATGTCTTTCTTAGGAGGGCCTTTAACTCAAATTT
CAAATTCATTGCATTTTTTGCAAGCGCTCAGCACTCGCTTTCGAGACAGCGTGACCGCGA
TCTGCCGGACCTTATGATGGATGCAATGCATGATATGCCTATCGCCGACTTGCCTCGGTA
CAGACCCCATAGAGACTTCGACCATTTCGTGGTCTTTTTCCCATTTATTTTATATATTTT
TTGGACGAGTTTGTGATGTTGCCCCATTAAGCTATTCTATTTTCTGCACTTGAATTGATT
GTACGATTGTGGAGTTTGTTTTATTTATAAAGCATGGCTAAAACCTATTTGGAGAATTAC
AGGTTCTTATCATTGAACACAACTTCAAATTTGGTTTTGTGTAAGTATCGTTTCGTAAGT
ATCATTTTTTCCCAGGGGTTCCCAATATTATTATGTTATTTATTTGGCTAGGCCCAAGAT
TTAAACAAGAAAACAAAAGGAAAGACATTTGCATGGACGCATATATATAGGATTACATTT
ACACGCTCTACACATCCGCATCGATACATGAAGGCGGGAATGTGTGCTTATTTACGTACG
TATGTAACGTTTGTAGACGTATCAATATTCAAACCGCACACACATAAACACACGCACGTA
CGTATGCATGTATATGATCAACGTTCACACGCACGTACAGTACTACTTGGCTTCGGCGTC
AAGGGTGAGGAACGCGAACGGGCGCTCGCCGTTGAAGTTGCCCGGGGGATCGTAGTTGCA
GGTGATGAAGACGCCCCGGTTCCCAGCGCAGACCACCCGCGCGCAGCCGATGCGGATCGA
CTTGCGCCACACCACCTGCGTGTAGTGCCCGCACACCTTGCCGGCGTCGCAGGTGTTGCT
GTCAAGATGGTAGTTCTGCTTCTCGTCCACCCACAGCTTCACGGCGTCGGCGGCCGTCCA
TGACCGCCCGGACCCCCAGAAGATGTTCTCGCCGAACGGCCCCCCGGAGTGCTGCAGCCG
ACAGTCGCCGGCGCGCTCCGCCGCGTAGTTCTGTGCGAACCTGGCCACGTTGTTGTCCCA
CGCCACCGGGCCGACGCCGTCCACAGCACGGGCGCGGTTGTGCAGGTTGACGAAATCCTG
CGGGGTGTTCTGCGCCGAGACGCCGGCCACCACGGCCATGACTATGGCTAGTGCGAACAT
TGCAAGACTACTCTTGGAAGATGCCATGACTAGTAGGTGGCTCCAGATCGATGAAGAGTG
CTTGAACTTGATGGATATTTATAGGATGAGCATATAGAAAGGGTCCGTGGCAAAATTTTG
TAGGGAGTCCATAGTTCTTTATTTTCCAAGGAAGCTAGCAAGAAGATGACGTGGGGTTGA
ATCGAGTGCATGCATATGTATCAAGAATTGCTAGTTACAAGTGGCAAGGCTTCCTTTATT
TCGAGTACATATAAATACTTCTGAGTTCTGACAACGAGTGATTATTCCATGCGATTTCCC
GATATACATTGGTCGATTACTTTGAGCAGTTGAGTTTGCAATAATATAGAACTAGAATAT
AACCTCATTGGACGGGCGAAGTTGAAAAGCGTACATCCACTTGGGCGGCAGGGGCAAGTG
ACAAAATATGCTTGCGTCCTCGCTACTACTCCATCTGTCACACAGTTAAACTTGCGTGCA
TTTTCAAAATAGACAAAGTTTAAGGCGTGGAAACAATTACTCCTATTAATTAGTATTAGT
ACTACTCATGTATGCACCCTCCTAATTTGCTGCTCACACATTAGTACTAGTACTTTCTCA
GTTG