| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_1563557
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_12558 |
5 |
2127 bp |
MLOC_12558.1 |
Available |
Available |
LOC_Os08g39960.1, FRAME:+1, EVALUE:1e-127, 13108.m04269 protein 3-oxoacyl-reductase, chloroplast precursor, putative, expressed |
| MLOC_12559 |
5 |
2981 bp |
MLOC_12559.3 |
Available |
Available |
LOC_Os08g39950.1, FRAME:-2, EVALUE:0.0, 13108.m04268 protein potassium transporter, putative, expressed |
CDS Structure of MLOC_12558
CDS Structure of MLOC_12559
Contig Sequence (8977 bp)
>contig_1563557 8977 assembly3_WGSMorex_rbca.fasta
TTGGGTATAGTTGGTTATGGGTTTAAACAGTTTGGTTACAAACGGTTATAAACTATGGAT
CCAAACCGGTTTCTAGGCATTGGTTATGTGCAATAACCAACGATGACCGAGAACGAATAT
CTTTGATCTGCATGCCTGTTGTAATGCACTATATAATTATGTACTATCTGGAAATACCAC
ATGAAAATTGGAAGTATTTGTTTGTGCTTTGGCTGAGCAATCTTGTTTTAATACACTTGT
TAGTGAGCTATTCAAACGTGGGCGTTTTTTTTGTCTTTTGCTGTGTGTTGAATTTATCTC
AAGGATTATTTTGTTCTCAAACTATTGTAGATGCACTTATGCCTTTTGTACCTCATTTGC
TTTTTAACTTGTCAATTCGTGCAATTATATGTACATTAAAGCAAACCCATAGTTATGTAT
TGATTTTAAACTCACGGTTATGTATTGGGTTTAAGTTGGTTTGGGTGGAAAAAATAATGG
GTTTAGTTTTGATTGGGCTAAAAATGACATCAAATGGGTATGGTTTAAGTATGGTTTTAA
GAGATAAATGTATGGATATGGTTCAAGTATGGTCCAAGTATGAAACCATTTTCAGCTTTA
GGAAGATGAAACATGTCAAATACACTAAAACCAAATGATGTTATAGGATGTATGGGAATT
GAGGGGTTTCACCGGAATAATCCCCGCAAATTCCCTAAAATACACTACCAAACAAGGCCT
GGCTGTGTGCTCTCGAGTCTCGAGTGACTCTGCTTTTAACTTCCACAACAACCCAGTGCG
TGGCGACCCAACTCTACTTTCCAGCGATGGCGTCGTCACTGCCGGAGAAGGCTGGGGTTT
CCCCGTGGAGCAAGCTGGAAGGGCAGGTTGTGCTGGTGACGGGCGCCTCCTCCGGCATCG
GCCGCGATTTCTGCCTAGACCTGGCGCGCGCGGGCTGCCGGGTCGTCGCCGCCGCGCGCC
GCGCCGACCGCCTCCGCTCCCTCTGCGACGAGATCAACGCATCCGCCGCCGCGGTCGCCA
GCCTTCCCTGGGCGGTGGCCGTCGAGCTCGATGTCGCCGCCGGAGGGTCCGCCGTCGAGG
CGGCGGTGCAGAGGGCCTGGGACGCCTTCGGCCGCATCGACGTCTTGATCAACAACGCCG
GCCTCCGAGGTAACCATTCTGCTATACGGGGTTCGATTAGCCGTGTGAACACCTGTCTAG
TATTCATCTCCAACTGGAAATACTTGTCAAACTGAGCTCAAATGTGTAATTATTTTGGTC
AACAATTTAATTACGAGCGTGCGTGATCTTATCAAGTACTGTTAATTTGGCTCTGAGGGG
AGAAAAAAATATCATGTTACTGAACCTAGTACATATAATTATTGTAACTTGAAAGAGTCG
TTGTCCTTGCATACTTCAGGAGGTGTTCATTCCTCACTGGATTGGCCTGAGGATGAGTGG
GATAAACTCATCAAGACAAACCTTACCGGATTATGGCTCGTCGCCAAGCATGTATGTAGA
CACATGCGTGATGCCAAGATAAAGGGTTCAGTTATCAACATTTCGTCTGTTGCTGGCCTC
AACCGTGGCAATCTGCCTGGCTCCATTGGATACGCATCCTCCAAGTCGGCCGTGCATTCC
GTCACAAAGGTACCTCCACTATTCCTCATCAAACGTTTGTTTCGGTATTGTGTTCGTAAC
AAAGCTATATTTGATATGTTGGTGCAGCTAATGGCTTTGGAACTAGGAGCGTATGGAATT
AGAGTGAACGCAATTGCGCCTGGAATATTCCAGTCAGAGATAACTGCTCCTCTGTTGCAA
AAGAGATGGTTGAGCACTGTCGTTTCGAAGATTGTGCCACTTAAGACAAATGGCACTACT
GATCCAGCATTGACATCGCTGGTTCGTTTTCTGATCCATGAAAAGGCATCATATATAACT
GGCAACATCTTCATCGTAGATTCAGGCGTCACCGTACCTGGTGTTCCAATATTCTCTTCT
CTGTAATCTTTGTTATTAGATTACAATTAAGTCATATAGGAGTGCAACAAGCAATAAAAA
CTCCACATGTTATTTTTTGTGTTAGCGTTTCTAGGTGCACGTTACTCCAGAAGCACAATC
GTTCTGTATAACATGGTAAGCTTCTGAAGATTGCTTCTATTAATTTCTGTATTTTAAGAG
CAGCATACCCTTGCGCCCACTTCTAAATATTACACTATCCACATTTGCAAAATTGTTGGC
TGTGAAATAGAACTGTCCTGGTAAACATCACTGATTTAGGTGAGACTATTATTTGCAACC
AAACATTCAGTTAGTTTTGCTAAGGAACATGATTTAGGTGACATTCTTTTCTTCATAGAG
AATGTAGGTAAACATTCTGTTGAAAACACTAACCAAACCAAAATGACCCAAAGATATATA
GATATAAGTAATTACCAAATACAGACATTCATTAGAGATGTTGTACATGCTAGGAAAATA
TGGATTATATAATCAATTGCATGACACTCTACAACAACAAAGCCTTAATTGCATGTCACT
CTAATGGATAAAATATATATTTCGTGGCAGTTTTAGCAATTTGGCCGACATTTGAAATTC
GGCATTCAGGCATGTATAATTGGAATTAAACAGAATGATTTCACAGTTCTTCAAACAAGT
AAATATCACCATGCTGGAACAAAAAACTCTATAGTATGTCTATGAATAAGTGTGAAACAT
ACAAAACTTTGGTACGATTTAAAGTTTGACCAAGATAGCTATCGGGAAATATCTAAATAA
GATCTTCACTAATATTACACACTGAAGACATCCGGATCCCATGCATATGCACCTGCGAGT
TGCCTTCCTCAGATCTCATAGTGCATTCCAACCTGCAAGGTTTTGCCAGGAGCTATCTTT
AAACTGGACATGTTGGACCTGAAATTCTTCTGCAGGAACCTGTAAAGGCTATTAATAACA
AAGCGCTTGAAGCAGTTCCGTGTGATGCTCATCTTTAGAATAGTCCTTCCAATCACAAAG
CTTGTTCCATTTGTGAAAGCTGAATCCAACAGTAAGATCTCATCATTGTCCGCTATTTGC
TTGAGGGATGCAACAACTAATACAACGAAGTCATCATCATCCATGTTGTGGTTATCCATA
TAGCCATATTGGAGTATGCACCTATAAACACCAACATGATCTAGTTTGTCTACGAGGAAG
CGCTCTTCTGGAAGGACAGATCTCACTGGAAGAATCCTCACAGTGACAAACACCATCACT
TCACGGATGGAACCCGTGTGCTTAACATAGTGACGAACAATAGGTGGAATGCCATTCATC
AAGTCTGTGCAAAAGATGCATATCCCAGGTACCTGGCTGCTACCCGTTACTATTTTAATG
AACTCCTGCTTACCCAACAAGTTGGCTGCATCATATTCATTCTTCTTGCGTCTCCCATAA
GTCCAAGAAATTGTAATTGCAAGGAAAAATGCAGTATTTGCAAATGGAACCCAGCCACCT
TGTAAGACCTTGTTTAGAAGTGAGGTCATGTAAATCCCTTCAATGGAGAAGAAGACAACG
AAAAACAGGCCGACTGCTATGATGTTAGTTTGCCAGATGACAACCATGACAACTGTCATG
AGGGTTGTTGTAAACAGCATAACCCATATCACTACTGTGCCTGCAAACAAAATGAAAGAA
CGTTCAGTCAGATTGCAACTAATGCATGTCCACCTTTTGCATTCCTGCTATTGCATCTAT
CAAAACTGAGAAGTGTTCCCTTTCTTGTTTCTAGCACAATAACAATGGTAGGCTACTCTC
ATATTGTGTAAGTATCAACCAAACGATCAGGCCTTTCGTATGGTAACATTTTCTTATGTT
TGGTGGCTTTAAATGGCTAAATGTAGTTTAACAATAACTCTTTATCTCACATGGATAGAA
TCTCACATGGTCAGCTGCAATTAGAAATAACATGAGCATATAATAGATTGACAATTAGGA
AAAACACAAGCATATACTAGATTGCTCACCAAAGGCTTGCCCGATCTGTGGCCCCCCTTT
AAACCCATAAGTTATCAGGATGCACGTGATCATCAAGAAATAGTTAACCTCTGGAGAGTA
TACTTGGCCTTCATATTTTTCCGAGGTATGCTTCATCGTAACCCTTGGAAAACAACCTAA
TGCAATTGATTGTCGAATGATGGAGAAACTGGCTGATATTAATGCCTGGCTTGCAACAAT
AGCAGATAAAGTAGCTATGATAAACATGGGCCAAAACAACAGCTCTGGAGTGCTACTGTA
GAACGTTGTGCTGAGCTTAGAAGGGTTCTTGATCAAAAATGCTGCCTGGCCAGAATATGC
AAGGATCATTGATGGATAAACTACTGCTGAAAATCCCAGCTGCAGGGGGGAAGGAAGGAA
TATAGTTAGCACTTGAATTTTTATCATCTTATTAAAATTAAATGTTCATTTACCTGAATT
GATGACTTGTTGAAGTGACCCAAGTCAGCAAACATAGCTTCGGCACCTGATTATAATGAC
CGACATTTAGCCATACAAGGAGATCACGTAAATGAAAACAAAATCAGTAGGTATATGATT
TCAATGTTAAGTAACATGGGAAGTAAAGTGCTGACCTGTTATGCATAGAACGATTGCTCC
AAGTTGCTCCCAGGCTTTTCTTTTGTTCCTTGCGAAGAAAGTTATTATGTGGAGTGGGGA
CGCGGCTTTGAGAACTGATGGGTAATACTCGATAATATTGTACAGTCCAATGAGCGAGAC
AAATAAGAACCATAGGAGCATAATAGGAGAGAAAGCGAAGCTGACTTTGCTTGTCCCATA
GTTCTCGAAAAGGAATAGAATGATCAATATAATCACGCTTAGAATGACAACATGATCTGG
AACAAGCAAGCAGATTGTTATTGTATTGTTTTTCCTGGCCTCGTAAAGTGGAACTGCGCT
AGCTAAATAAAGCTAACGAATGAGCAGCTGTTACCTTGTGTTATCTTAGGAGATCTTGAT
TGGATTCCTTGAACAGCCGACAGAACTGTTTTATTTCAGATAGAAACAGAAAGGTCAGGA
CATTACTCAACAGAGGATTGAAATTCTATTTCTTGTCACTCTTGAAGTGGCTAATAGGAA
CAACCAGGTCGGAGTACCTGAGATGGCTGGAGTGAGAGCACCATCGCCCATCACCATGGA
AGTCGCGATCAGCACGACGTAGGTGATGACTGACTGTGCTGTTGTGCTTCTTTCCAAGAA
CTCACGCATCTTAGACGGCAGTTTCTTCTTCTTGCTGTGGAACTTGAGATTAATGTCGGA
TGCCAGCCGTGTGACTGGCATCGGCATGCTTCCGCTAAAATTCACATGCTGGCGCAGGAG
CGAGTAGAGGGCAAAAGTACCACCTGCACGAAGTAAGCGTGTGTTTGTAAGTAAGCTTCG
AAATCCTATCGCTACAGGTCCAGAGATTTTTTGGCACGCAAAAGATTATCGAATCCGAAC
AATCAAGTACCCCCTGTTTAGATAGTGATCTAAACGCGCTTATATTTTTTTACGGAGGGA
GTACCTTCTTAAGATATTTGTGCTTGTGATATACCGTGGGTACAGAATTGTATGGTGGTG
GAAACATTTTATTGGCCATTTTTCTTCTTAGTTTTACTTCCGTACACACCCCTAAAATGT
TTACACGAATCTTAAAGTTCCTTAAAAATGGTATTCTCGTACATTCACGATCAACTAATA
CTAATCCCTATTCTCCCAATAGACCAAACAATAGGTCAGAACAATCTATTTGCATCAAAA
TTTGTGAAGATTTCGTTTTTACTTTTTGAACTGGGGTAGGACTGATGGTCTTGTTGTAAT
GCAAAATGGAGCGGTAACGTCTGGATATAAATATGGATCAAACGGCGACAAACATTCCAC
AACATAGTCGAGAGTGGCTGCTGAGATGCGCACTGATGATTCTAATCTACTACGTTTGGT
AATCGAAAAAAAGGCGGATCTGCATTTACATGCAAAATAAGGATTTTGACAAAAAATATT
CGGATCCAGTACCCATATGATTAGATTATAGAGGGCAGAAGAGATAAAGCAGCAGCATCC
GTCAATCAAAGGTGACCGTAATGTAATGGGAAGGAGATCGATCGAGTGGGTAGCGGCAGT
GGTTACCTTCTCCATGGTCGTCTGCATGGAGCACGACGAAGGTGTACTTGAGGAGGCCGA
TGAGGGTGAGAGTCCAGAGGATGAGGCTGAGGATGCCGAGGAAGTCCTCCTCCCCCGGGT
CCGGCAGCGTCACGGTCGAGAACACGTACAGCGGGGACGTCCCGAGGTCGCCGTAGATGA
TGCCCAGCGACTGGTAGCTCAGCACCCCGATCTGCCACCACTTGAAATCCTGCCGTCGCA
CATGGATCGATCCATCGCGTCAGAAATGGACGAATCTGCAAAAGTTTTATATAAGAGGAC
GGATATATACGCACCGGGGCTTTGCGGTGCTCCATCTTGTAGTACTGGCTGAAGGTGCGG
CGCGTGGCGCCGGCGCTGTCATCGTGGTTCGTCGAGCTCCTCTCGTCCACGGCCGCGACG
GCGGCGGCGCTCAGCTGGACCACGACGTGGTCGGCTGGCGGCTGGTGCTCCATCGCGCCG
AGCGAGAGGGAGAGAGAGAGAGAGAGCGATCGACCTCACCAACAACCAGAGCGGCCTCCA
GGGTTTAATAAGTACTGCCAGCACCGACCTCGTCTTCTCCACGCGGGGTTTTAGGAGGGT
TCGTTCTCCTTTTGACAGTCTTTCTAGGAGGGTTAGTTGGTTGCTTAGTCAGTCAGTTCG
TTCGTTCGTTAGCAAGCCAGCAAATAGGCCGGCCGCCTCATTGATAATCGGAAAAGGTCT
ATTTTAAACCCTGAATTGGCAGTGGTCCGGCGGAATGAACCCTTAACTCAAAATTCTGAT
CGACTGTAACCTGAACTATGCGATTTCGGTCTAAATCAAACTTTAAGATTCATTTCGCCG
TATCTTTATCAATTCAGGGTTTAAAATGAACTTTTTTCTTCATAATCCGGCGTAGGCATT
GCAAGCCTCTTGCTGGACATCCGTCTTTCTACTCGGCCAAATCTTGCCATCTTTTTTCTT
TTCTTAATCTAAAGAGAAGAAAGGCCACAGATACATGACATGAGAGGGAGATATACGCTG
CAGGATGATCATCCACTGGACTCGGACTGTACTTTTACTTATTTATTTTCAAAGACGCAA
GCGTTTATATATACGCGCATACATTTTTTATGAATAATACGAAAGTTTTATTCCAAAGTC
ATAATCGCGAGGCAATAAGTCCTCACAATATGGAGAATATTCATCCCTATGAACGCGCGT
ACACACACATCATATTTCTATGAGCATCTTCGAAAGACTGAATCAGTATATCATCTTGAG
ATTTACAAAGTCATCGTAGGTGTTTCGTCATCCATGAAAACGTCTCATTTCATTGAATGC
GCATCGCCGAAAATCCTGAAACAAATTTAGGAATAATGCGAGCACCAGGATTTAAATCTT
GATGGGCTGGAAACACCACTCTCTCTCTGACCATACAATCACAGATTGATTCGCTGACTG
TACTTCTATTTATGATGTTGTTGTAATTTTTATTATGTTTAAAAAGCTTAGAATTTCTGA
TGAACCTCCTACAGATCCCAGTCCTTTCAAGAAAAATATGAGAGAAAAACTAACGGGAGA
GCAAAGAAAATTAGCCATAATAATTTGTAGGATTTTTTGTTTTTTTTAAGAAAAAGTAAG
TGTGGTTGCGAAAGTATCTTTCTACACCTGAACTCAAATGCTTCTGGTGTGAACAATACA
ATTAAAAAATAAAAAAAAAGTTAAGAAAAAAATATATTTTTTGTGGCATACTTTAGAAAA
TGATAGTTATGCATGCAAAATTTTATCATAAAATCACATTCGTGGAAGTTCGTGGCATAG
AAAACAAAACAAAATCAGAGCTCCAAAATACGTTTGGAAGTAACATTTTTAGAGTATCAA
TTTTTTTCATGCCTTTCACCAATGTGATTTCATGATAAAAATTTGCATGCACAACAAACA
TTTCTTAAAGTATGCCTAAAAAATATTTATTTATTTTCAAAATGTTTTTCTATTTCCTTT
ATTTTACTGTTCACACCAAGTGCCTTTGTGTCCGGGTGTAGAAACTCCATCTCTGTATAG
TTGACAATTCACAACAACCTCTCTCTAATCTGAACCGGGATCTAGCTTGTGAGTCAAACA
TGTGCTTAGAGCATCTATAACCGGACCCCTCGTATCCGCACCTAACGCTGCCCAATGATA
CATCTCCAATGTATCTGTAATTTCTTTATTGTTCCATGCTATTATATTATCAGTCTAGGA
TTTTTTAAGCATTTACTTACTATTTTATATTTTTTTTAGCATTAACCTATTAACCAGTGT
TGAGTGCCCGTTGTCGTTTTCTGCATGTTTTTGGCCTTTCAAGAATACTGTATCAAACAA
ACTCCAAATATGCCGAAACTTTCTGATGCTATTTTCGTGAACAAAAATAAGACCTCAAAG
CTTCCGAGGAAGACCAGAGGGTACACGAGGTGCCTCCAATCCAATAGGGCGCCCCCAGGG
GGTGGCTGTGCCATTATGTCTTGGGGCCACCTCCCAGCTCCTCTGGTCGTGATCTCTTCT
CTATAAATTCACATATTTGGGGAGAACCCTAGAGAGCCTCCTGAAAAAAAAATCCGCCGT
CACAAGTCTTTGTTCCGCTGTGTGCCCATCTGAAGCCCTATTTTAGTGCCCTGCCGGAGG
GGAGATCGATCACGGAGGGCCTCTACANNNNNNNNNNNNNNNNCATGGTGATGTATGAGT
AGTTCATCAAAGAGCCACGGGTCCGTAGTGTGACAGCCCGATGCCGACNNNNNNNNNNNT
TCCCCTTTATTTTCGTTTTCGTCGCGTGGTTATTTTTTTTGCCGCATCATCATCGCATCA
TGCACGTCATCAGCATTGCATCGGCACCCCGCTGCCG
