Contig Data
morexGenes
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Map Locations of contig_1563554 (5564 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1563554

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12555 3 2671 bp MLOC_12555.1 Available Available LOC_Os11g02464.1, FRAME:-1, EVALUE:0.0, 13111.m00177 protein vacuolar-sorting receptor precursor, putative, expressed





CDS Structure of MLOC_12555






Contig Sequence (5564 bp)

>contig_1563554 5564 assembly3_WGSMorex_rbca.fasta
CGACGGCAGATTCTTCTTTAATAGTAAAGATACTGCTTCATCCGTTCATTGTTATAAGAG
ATTTCTATAACTTTTTCTTTCTTCTAATTTGAATGTATTTAGATATATTTGACTGTGTGT
TGACTCATCTCAATCCATAAGTAGTCCATACTGAAATATCTAGAACATCTTACAGTACCC
AGCAAAAAAAACATCTTACAGTAGTGAATGGATGGAGCACTTACTAGCATCTTTCCACAT
TCACCATTGCCTTTTCTGTTTTTCGAACAGAAAATTTGTTGGAACGCAGAGGACAGGGTA
AGGTGTAGAGGGTTAGTGAGCACAGAGACAGGTCTGTGGGACGCATTACGTTCCATTTCC
ATTCCAAAATTTGTTGGAACGTCCTCTCTCTCTCTCTCCTTTGCAATCAAAATCAGAAGT
GGCCTCTGCAACTACCAAACATGATCCAGCCACACTTTCCATTCTCAAGAACTGGTCTGC
AATTATTATATTATTATAATACTCCTAGCTTGAAAGAGATGTTGAGCTACTATTGCACCC
TCATCGTCGTTCTCTTTTACCAACAAGACACCTGGAAGTGGTACTACTTTACATCCATCT
TAATAACTTAGGAGAATCATCATGATCTTGGGTTAAAACGGAGAACAGAGCAAAAAAGAA
GCACACAAGACATGAGTTTTGCACAATCTCTCCTCTGATTAAAAAACAGAAGAAAAAGGA
AGAGATGATCACACCACTCAGGACAAGTGTGTTTCTCTTCCAAGTTTGATCTACCAACGA
ATTTACAGGATGGTCCGACTGGGACTGGGTGCGCTACACACAACATATGCAAGACAAGTC
TTCTTCTCCTCCTCTAATCATCCTTACCATGAGCTGAAACAAACTGCCTGTGCTGCTGCT
CTTCACATCTCAATATGGTGAGAATGGCTGGGGATCTCTCCTTGGTTGTCCAGGGGCATG
TACTGCGCCATGATAGCGCGGATCTCTGAATCCATGTAGCTCTGTGTGTAGGGAAAAAAT
AAAAGCAGTGCGGAAAAGGTTTAGAAGACAGCCTAGAGTTATCCATGTCTAACAGTTGAT
CTGTACAAGTATCTTACCCGGATCCTGTACTTGTACACGGCGTATACTGCGATTCCTGCT
GCCGCTAGGCCAAACAACACAACCCATAGGAAATTCCAGCCTACACGTGCTCCTGCATCT
TTGCCTGAATATAATGTGTTAACTTAGTAAGCTTTTAACAGCTAATCTATTAAAGAAACA
ATCATTAATAAAATGAGCGAGCATCATAAAGATTATTATAGTTAGTCTGCAATTTGGGGG
ATCTTATGGCCTCGAAATATCACAGATTAGCTTAGCTCAAGCATATAGGCGCAACTGCTG
GGGCGACAGTAAGCTTGTTATAGGAGATATGGACATACTTATGCACGTATCATGCTCCTT
CATGTACAGCAAGCCACCACCACACCCGCACTCGTAGCTTCCCCACGTGTTCTTGCATTT
GCAGTCCTTGCACTGGCATGCAGTCCTTTCCTTGCACTCATCAACATCTAGCACAAAATA
TTCCACATCAGCACAGCAACAAAGGAGTACCAATAATATATGACCAACAATGTTCAGTAC
GCTTTGGCTGTCACTGAATTCTTGGTGGATATTCATATTTGTTCACTCAAATACACAACA
TTTTTGTTACTTTTTAAAAACTACTATCTCTGTACTATATTATAAGACGTTTTTTGCAGT
TCAAAACGTCATATATTATGGTAGGAGGGAGTACAACCTACAGGTTAGTCCAAAAGAATT
GTTTCCATAGGTTCCTATTCATATTGCGCACCGGAAGCTACAAATTCTGAACAGCCAACA
AGCACTTGGGATAGCATAATGGAGTCCAGGGACCGACACTTACCTATACATTTGTGGACA
CCATCACCTTTGAACCCATCTGGACATTTACAGCCACCATCCTGCAGGTTATGACACCAG
AAATATGCCGTTAGATTCCAGATAATACATGTGGTAGCATTAAGGTTAGCAAAAATCCAA
ACTGACAACTTACAGTGCAGGCAGAGTGTGTCCGGCCATTCCTGGTCTCTTTCCAACATC
CCCCATTGTTAATCTCACAGCGACCAGATCCTGAAGCTAAAATAACAAGGGCAGGTATAA
CAATATTCAATAAGACTAAACTTGCATGTCCGGGTATAGGGTTAGAGTGGTAAAAAGTAA
TCAGCTATATGATGCAGGGTACTGTCCATGACATTATTTCAATACTGAAAAATGAAAAAG
AAAATATTGTCTAATTTCCTGGTATAGATACCTTCACAGTGAGTGTAGCCATCACCAACA
AATTTCACACCTTTGACAACCGGGCATTCGCAAACTCTACCACGGAAAGTATCCTACATA
TACAACACACAAGTAACATCATATGCATATATGCTAAGAAGAAAAGTGTCATCCCATCAA
CTAGAACTTAGCAGAGAAGATGAGACCACCAGAAGTACCTTGCATGCAGATATGTTAGTA
GCCTTATCGTGCCAACAGCCACCATTGTTCTCCAAGCACTCGTTAGTTTGTATATCTACG
ATTTGAGAACAAGAATTGAAGATGCTTAAGAGAAGGATACCAAGCAGGTTATGTTTGCCA
TACTCACAAATCAGCAGCGAGGAAAAGGGTATTGAAATCAATTCACTAACCTTCACTCAA
GCAAACGGCAGGCTCAGTAGTTTCTTGGAAACCTGCACAAAGTGCTTTAAGAACTGCCCC
TTTGTCAAGTTTCCCTGAGAAACAAATGTTAGGATAAGCACAACCGGAACCAGATAACTT
TGCTGGTAGCTATAGTGATTTGAATTGGTTTGACGGAGCACGCACCTCTGTATTGCCTAT
TATTGATGACCAGTGTTGGTAAGATAGTGACATCACCACGAGCACCTTTGCCAATCTATA
TAAGACGGTCCAAAATGATACAACATGATCACAAGTGGGATAAACAGAAGGAATAAATCA
CACAGAAGTACCAAGTACTAACCTGAGCATCCTGTTCAGCTTTCAGCACAGGATTTTCTT
CATCGGCATTTGGATCACCGATACACTTATCTATTGCTTTGTGATCAAGTCCTAAAAATC
ATGAACGCGTTCAATATAATTATCTACACCTCACTTTAGAAGATAAAAGATGCGATGCAA
AGACCAACATACCAAGTGACTTGATAACACCATCAGCACATTCCTTAGTATACTTCTTTT
CCTTCATTGGGCAGCGGATTGCAAAATCGGTCACGTAGTCCCACCATAACCAAGGCTTCT
TATTCTCCTTCGCAACTTTATAAACACAGACTTGCCGCAAATTTTGAACCACCACATCTT
TCCCGTCATACCCTTTGCTGAAATCCTGTTCCGGGTCAGGTGCACAGTACCTCCCATGGT
TGATACACTGGGACTTGCACTGCTTGCTTAGTGTGAAGGCCTCGGGGCAATACCAGGTAA
TGTAATGAGGAGTGAACTGTGTGTATCCCTTTTTCTCAAGTATCTGTGCTGGTCCTTTAA
AGCTCTTAACGAAATCAATCTGGCTGTCGCATTTGGGACCACATTCATCGTTACTGTTCG
TCCAGAACTCGTATTCAACACGCTCATCAGGGTGAGGCAGGGACTCCCTCCAATCTAAGT
TCACATTAACCATGTGACCGCTATCAACTGCTTTCCTGAGTCTGTCCCCGAAGCTTTTTG
TTATCAGCGCTGATGCTATGGTGATGTTCTCTAAATAATCAGCCCTTCCGCTCTCTTCAG
GTGTATCCATTGTAATTAGAGGCTCATCCTTGTCATCAGCAACAAGGATAGCCGCCACTC
CGGCGTTCTGAGCGTTCCATGCCTTCTTAGTGAAGAAGCAATCTGTACAGAAGAGGAAAA
ACCATGTTATGCAACCCACGGCATATTTTACTTAATCGAGTGGAACGCAACATGATTGAG
CATATTTTAATTGAATTGACTGAGTAGAATGCAACATGACCAAGCAGACAAATAAGAATG
TTAAACTAGAATCAGCTTAAACAAGATCAGCGGAACATCATCGGGAGGTCAAACACCAAG
ATAGTGACATGGGTACTAAAGAAATCACAGGAGGTCTTCAGGGTAAAGGTCTTTTCAGAT
TATATAAGTGTGACCCAGACAGTGAGACGCGGATTTCGTCCTTGTATGAAATCCGGTCAA
CTAACATTCAGCTCAATCACTATCATCAAATGACAAGATCTAATTTTTCAACGCACAGAA
AAGACTAGACGAATTAACAAAAGATACATCAGTTCTAGGGGAAGGGCCAATTATATCTGT
GCAGGCAAAAGGAAAAGAAACAATTCTCTACAGTAATTTGCTCACCTCCCCGGTCGACTA
GCAAGAAGGTGGGCAGGGACCCGGGCTTGGCCTTGTAGGAGATGTCGAAGTCGTCAAAGC
TCTTGCAGGCCTTCCTGTTGGCCTTAGGATAGGCGACGACGCCGACCATGGTGCCCCCGT
ACTACGGCACGCCGAAGTTGCCAATGGCGCACTCGTAGCTGCCCTTAAGGGAGTCCGGCG
CCGTGACCTTGAGGCTGTTCTTCTCCACGACGAATCTCCCCTCGCAGCAGCAGCAGAAGC
CGCACAGTAGCACGGCCAGCAGCAGCAGCAGCCGCGGCGCCGCCGGCGGCGCGGATCGGA
GCCTCATGCTCCAAACCGGCGACTGGGCCTCGAGGAAGGATCGATCTTGGGGGCTGTACG
GGCGAGGAAAGGCGGGGGGATAAGCGGGATTTAGCGGAAAGACTGGGACTTTAGGCCGCG
GAGGAAGGAGTTGGAGTGCGTTTATGGTATTTGGATGGGCGGAGGAGTTGGGAGTTGGGG
AGATTTTGGGGGAGAAGATGGTTGCTGGTACGGGCTACGGAGGAGAGGCCGTGGTGGTGA
AACCTCTTTTGCTTTGGATTTTCTTTACCCGAAACGTCGTAGAGTTGAACACTTTCTCTT
TTTCTGTTTTGGTTCCTTTTTCTGATGGATTCAGTGAGTTTTATTCGTGAAAACAGAGTT
AGGAAAAAGTTAACTGACGACCGTAGCTAGCAGCCAGGTTCCAGCGAACGCCGTCCTTAA
CATCAGATCTGGCCGCAAATCCGAAGCCACGTTCTGTTTGGAACCATTTAATTATATAAT
CCCTCCCTAATAATAATAATATCTTCCTAATAATAATAATCTCTCCTAATCTTTTCTAAT
AATAAAGCGCGCAGCGTTTTTGGTGTCCGTCGTCGGTTATTTTGTAAAAAAACCCTCGTA
GTTTCAGATAATTAATCCGCAGTCAAATTTTATGTCAGAACGAACTGTTTTTTGTCATTT
TGTAGAAAAGTCTTCACAATTTTAGATAATCAACCCGTGGTTCATCTTTTAGTCACAGCC
GAACCGTTTTTTGGCTTTCAAGTAATCAACCCGACGTCTCTATTTAAGTCAGCCAAAACG
TTTTTTTGTTTTAACAAAAAAACCTGACTTTTTAGTTAATCAATCCATATTTTATCTGAA
ACAAAATTATCCATATCTTTTAAACCGTAACTCCGATTTTAACA