Contig Data
morexGenes
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Map Locations of contig_1563552 (5857 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1563552

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12553 2 1352 bp MLOC_12553.1 Available Available LOC_Os01g13210.2, FRAME:+1, EVALUE:6e-30, 13101.m01452 protein salt stress root protein RS1, putative, expressed
MLOC_12554 1 2521 bp MLOC_12554.1 Available Available None





CDS Structure of MLOC_12553






CDS Structure of MLOC_12554






Contig Sequence (5857 bp)

>contig_1563552 5857 assembly3_WGSMorex_rbca.fasta
GCGGTGCTGGCGCGCGTGCGGTGGGCGTCGTGGGCGTGTGGGGGGGGGGGGGGGGGGGGG
GGGGGCGCGGGGGGGGGATGCGGGGCGCGGCCACGTGGCGGGGCAGGGGCACGGGGTGGG
GGCGTGGAGCGGGGCGGGGCGGGGGCATTGCTATCGAGCACGAGCGGAGCGGGGGGTGGC
CGCTTGGCTGGCCTGCGTGTCTTCACCATGCTCTGTTGGTGCCGCCCACAAGGTGCTCGT
TGAAATGTATGAAAAATAAGAGGTCAAATTAGAGGGTGTGGATAAATGCAAGCAAATATA
AGGGGTCAAAACGAACACGCCGGGACATTGATCGGGCGAGTCTGCAAACGTTTGAGGGAC
ACTATTTATATATTGCGGCTATAGATGCTCTTACATGTATTCATATATACCAATATAAAA
AGATTCAGAGGGGCAGATCCAACAAATCTCGGCCATCAATCCAAGTCAATCCAACAACTT
AGTTTGCTCCAACGTCGAACGGTCAACATGATTAGCGCGCAGTTAATGCCATATCAAATA
TAAGTTACAACACTACTCATATGATTAACATGAAAATAATTATCCTATATAATATCTACA
TGCAGTTCATATATTGCCTAATATCAACGTACATTGCATGTATAACTTTATTAGTATTAT
CAAATGATCGATATGTATGTGGTTGCATGTATTTGAGATATTGAAAGTGAGGGATGTGGT
TGCATGGGCAAACATTTGAGGGATGGTCGGGCGATGTTCGGGGATGCGTCCATGGTCATA
TAGTGGGTCAGATTTATACATTCATGTAGATGGTCCAACGTGTTGGAAGAGAACAAGTAT
ATATTTGTACTCCAACATGCATAGGTAAATTCATTTTGAGAATATTTCCGAGGTGAAGAT
ATAAGATAAACATTTAAGATTCCATTTCATAACCTTTTTGCGGGATCCATTTGACAACAA
AAATTAAAACGATGCACATATTTCTCAAAATCCAGAAAGTTTTTGCCAGTAGGAATTTTT
ATTTCTTGACAGTTCCCCCTTCCAATTATATAAAATAAATAAACCATTAACCATCTCAAA
TCATTTGGGCAGCTTTCAGGACATCTAACCAGATTACCAAAGTCATAGCACAGAGAATCC
TAGCAGCATGTCCTACACTCGCTGTAGTCTGCAGCCTGTACAACTCCAGCGCAGCTTGCA
AGCCTCCACGACCCATTCAGCATTTTCTGGCTGCTTTGGCTTAATGACACCCCTTCCATA
ATCTTCTCCTCATTTGACGTTCATGCCCCTGCCCCCCTCCAACAACCAGTCCCGCGCCAC
CTCACACGGGGGGCACCCACGTAATTTCCCGCAGGGCCAGGGCGGCCTATGTGGCCAACC
CATTATATATCGCTCTCATGGCACCGTGGCTCATGTACTGCTGCCCATTGATAGGCTGGT
GATCACTTCTGTCGAGAGGAACTACGCATCCATCTCTTCAACCTCCAGCTATCTGCAGCA
CGTAAGTTTCCGTTCCTTCTAGCTTCTCTTGTTGCCTCCTTGGCTTCTCCTTCTCATGAG
AAAACATCTCATCAAGTTTTGTGTTTATGTTCTTCTGCTAGAGTAGACATCTTTGAAGGA
GAGGAATATGACGAGCGTATGGAAGACCAAGGTTCTCCCCGGGCTCAGCAAGTTCTTCGA
CAAGGATGGCAAGAAGGCCGCCGCCGCCGAGTTCTTGAAATCCTTCAACAAGGTACGTCG
AGTTCCGGGTCCTTGTGAAACTGCTGCAAAATTCTTGTGAAATTTGTGTGCTCCCAATTT
TTCAAATGGTAGATGATGTCCACACGTGTTTTGTTTGTTTGTTGATTGTGTGGGCGTGCT
CTGTGTGTGTAGGAAGAGATTGACAAGGAGATTGAGGACAAGAAGACAGAACTAGAGCCC
AAGGTTGTGGAGACTATTGAAGCATCTCCTCCAGAAATTAAGGTGAAAAGATTATTTTTT
TTCGTATCTAATTAGTATTGATTTTGTGTGGTTGCTTATAGCACATAACAGTAGGAAGTA
GCCACCTTGATGCTTATCATACTGTTATCTTGCTGTAGGGCTTGATAAAGGATAAGAAAA
CATCCAAGATCAAGAAGAATTCAGCTGCCGTCATCAAGTTCCTTGACGAGATGGCCAAGA
TTGGTAATTTATTTTTTCCCTAAGTTTTGCAAAATAGAATAGTATGAAAATAAATAAAAA
GGATGAAATACATAAATAGAATAGCTTATAGCAATCTTATCAGGTAATTTCCTAGGTTCC
ATATCTAAAATAACCTTTATCCCTTGCCTTTTGAGCAAAATAACCTCTTATTATCCTGCT
TCCACATAACTAAACTTTAGAGGAATCTTCTTAGAACAAAAAGGAGAGAAAGTAATGGAA
TCTTCTCACATATGTTTCTTGCAACAGAAGTTCACATCCAAACAGTACCGTTGCTTTTAG
GCGATGCAGACAAAACCATAACATGTGCAATTACCAACAAAAGATGAACAAATTAACAGT
AATTAATTAAGTAGCGCAAGTTTTCGTTGTTGGCACAGGTACCCTCAGCTCTCGGGCATA
CCGCCGAGAGTTTTGTGCGTTCTAGAATGAAGAAGACACTTTTACTCATTTTTAAGTAAT
CAAATTAATTATATACAGTATACGTACTTGACTTATACTAATCGAACTAATGAGTGTTGG
TCAATATGCAGGTTTCCCCGGAGCCAAGCTGGTGAGCGACGCGGTGGTCAAGTCCGGCAC
CACGCCCCTCTCCCCCGCCATCGTCTTCATCTTGGACAAGGTTGCGCCCTTCGTCCCAGC
GCCTAAAGAGGAGCCCAAGGCCGAGCCTGAGGCCGCCGCCGCCGCCCCGGCAGAGGAGAC
CACCACCCGCGAGGTCGCCGTGGAGGAGGAGAAGAAGGAAGAGGCCGAGCCCTCCGCTGC
GCCGGCAGAAGCGGCCGCACCGGCGGAGGTAGCCGCGCCCGCTGAGGTAGTGGAGGAGAA
GAAAGAGGAGGAGAAACCCGCCGAAGCCGCCGTACCTGCCGCCGCTGAGCCGGAGAAGAA
GTGATCTGTCGCCGCCGGACTCCAAGAGCAACGCAAGCCACCACCTGGCTTGCTAGCTGC
TGGTAATGGAAGAAAACATTTTAAGTTATTGTGAATTTGTGGTCGCTCTCCCGTGTCAAG
GTAGCTGCACAAAAGTAAGCACGTACGTACGTACGTACGACGACGCACTGCACTTGCCAT
GCATATCACGCATGCAAACGTACGTACACGCATGGAACATTTGTTATTCTTTCGATGGAT
CGGGTCTCCTCACCGTATGTGTACATTTTACGTGGGGCTTTCTTGCTTTTTTTTTTGTGG
TGATTAAAACCTGTGTAATTATGATTATGTTGGTGTGTTAATTTGTTGGCCATGGTAATT
AAGCACGAACTTGTGCATTCTTCTTCTCGAACTTGCGCAAACCCTGGACGATGAATCATA
CAGAGTAGCTGAACTGCTGAACGGCTGTTGATATGGTTGGTTTTGCCTTCATTCACATCA
GAGTGGATTAACAGCAATGGCTTTGCATGCATACGCCTCTCCTCGCCCAGTGGAGTAGTA
ATATAACTAGATCGATCATTCCGGCCGGTCAAGTTTCACGAGATGTAGATAAGCACGAGA
GAAGTCGGTAGGGATAGGATGGAGGTGGCGTACCAAATCGTGGCACGAAACCTAGAAACC
GGTCGATGGAGATAGCTTTGGGATATATACTGATCTCGTTTGCTTAGCCAAATCAGTGAA
AAAAACCAATCAGTGCCGGTCAGAAAGGGACGTGAGCTCAATCCTATCGCCCGGTCGCAC
GACACGCCTCTGGCTCAGCAGCTGGAGATGGAGATCTCGATCTCTCAGAGGCCCCGCACG
GCCGGGCCTGCGTGACGTACGTGCCTGCGTGCACCCAAATTATTACTTGTAATTAACAAG
GCTCGTCATTGATCCATCCACTGATGGATACACGCAGGATAAAGGAGATGTTTCGGTCGA
GATCGAAATAAAAGGGGTCGGTGTTCCGTTCTGTCCGTCCGGGCAAAGCAGTGAACCACG
CACGGTGCCTTCTGCCTTTGTCCAGTACCGTGGCTTGGTCGCTGTTGCCGGGCTCTGTCA
CGTACGTACGATACGAACCATGGCAGCGTGACACGAGCCGTGCACGCCGCAGCAATGAAG
ACGCGCCCACAAGGACGTGACACGGCAGGCGCACCACAGAAATATTTAATCAGGACGAGT
AGTTTCCAGTGGATTTTCCCAGGCATACACGTTGATTTTTGGTGTTCTCTCCTGAACCAC
GAGTGTACAAGCATGCGCTCGTGGTGCCAGCGACTGTAAACGAAGAAAGCTTCGTGGCGC
CAACTGAGCTGCGAAGAAGATTCAAGGGAATCTGGCGTGACGGCGTGAACAGCCGCGGGA
ACAAGGTTCCTGCCGTTGGTCAGCCTCGGAGCGGACGGGTGGTAGGTTTTGGATGAGACA
AGGAACGGAATCTCTTCCCCCGTTTTTGGTGTTTCTTGCTTTGCTTCCCACTTTATGTAC
CTACTCCTATTTTTGTTCCCGTTGGTAAGAGAGTTGCTAGATATTTCAAGTGCCGGTTCT
CATCATATTTATCGTTAACTACGTGGGGGTACGATACTCCAATGATGAATAGGAGTAAAA
AATAAAAAGGACTTGAAATTTGAAAAGTGTGCTTTCCTTTGCGTCGTTCTGACCCGATCT
CATGTTCTCGTTCTTGGCTGGGGTCTAGTTGTTGGACAAGGCTACAAAGGTTTAGCTGTC
TCGAGTGATTGGGCTGCATGCATAGGTTGGCAGGTAGCTGGTTCAGGCCAGGGACGGGGC
CACTTGGACAGCTAGCGAGAATCACAAGTTGGAGTTTGGTTTCATGTATGGACGCAAAAT
GGTACTTTATTTTAGAAAAGAGGATTACTCCGGCCTATGCATCCGAGCGATGAATGCAAT
CATTTTATTAATTATTTTTAAAGACCTTATAAAGCATTATATCAGTAAGCCTGAAGCCAC
CCTCTTGACGACATTTGTCGTTACTCCTAATCCCTTGATGCAGGGGTGCCGAATGTTCGA
GCCTAATACAAAACAGATATCGCATCAAAACCTAATATTTAGTGTCGGATGACCCATCCT
AGCACATACCGGGTATGAGTCACACGCCGGTCCGAAGCACTCATCGAGGCTATCGCCGCC
GTCATCCGCCTAACCGTCTTCAAAGCTGGTACCGACACAAAGACCTTGCCAGGTCAGCCG
TCGACGCCACCATGACGCCAGACATCGCCACCGCCCAGCGCTCTTCCATCCAGACGCATT
TGTCGTCGATATCCACCTGCACCATGCCGCCAATACTCGTCGTCATCGACGCGGTAGAAA
CAACATCGCACCTCTTGGCAACCTCCACACTGTCGCCGCTGTTGGAGCTACGCGAAGTCC
ATCACCCACATCATCACTCCGTCGAACATGAGAACTTTCCAAGAGGGCGCCTCCATGGAG
GGTACGACGCGAAGGACGCCGCCGCCGCCCAATCCAGGCTGAATTTTGGACTTTCGTCCG
GGAGGGTTCGGAGGTGGATAGGAGAGACCTCGACATCGCATCCGCGGAGGGTAACGGCGT
CGAGAGACGTTGCCGATGCCAGACTGAACATGCCGATCAAAGTTTCCTTCGGTCCCCATC
CTATACCACCAAACCTCGGTCGGCTCCGGATCCGGCAACGGACCACGAATCGAAACCTGC
AGAGATGAGAGAGCCATGGGGATCAACCCACCATGAAGGAGGATCGAGAAGAATCCATCG
TAGATCTCCACGCGCCGAATCCAGCGATCCGGCGTGG