Contig Data
morexGenes
Links



Map Locations of contig_1563539 (4761 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1563539

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12547 5 1956 bp MLOC_12547.2 Available Available LOC_Os08g43870.1, FRAME:+2, EVALUE:3e-77, 13108.m04752 protein carrier, putative





CDS Structure of MLOC_12547






Contig Sequence (4761 bp)

>contig_1563539 4761 assembly3_WGSMorex_rbca.fasta
GCCCCGGGGTGACAGCTGGGGCCGGTTGGGACGGGGCGGGCGAATATTCAGCATTCTAAT
GTTTCTGTTTTTGAGAAAGCGCAAAAGCCTCATGTTTCATTCCATTGAAAAGTTAAAAGA
GACACAGTACGCCCCAAATGGGACGAAAAAGAAAACGATTACAGACTTACCTGTGGGCTT
CTAGAAATGAGAGGTGCTATGTGATTATGTTTGTATCAACATTAGAAATTATTTTAAGAC
ATGATGGCAGAAAGCTTCAAAGTCAATAGTAAACAGGATTTGTTAGCATCCATACCTCTC
AGTTGCAGAACAGAATCATTTGGCTGGCAAAAGAAGCAATAGCCTGAAAAGGAAAAACAA
CCTATTGGGATGCTAAACTTCACCAAAAAGAACTCATCGATGTTTGAGAATCAATTAGTC
TACCAAAAAGAAATACTCCCTCCGTCCCATAATATAAGAAGTTTCTTGCAAGCTAGCATA
GCTTGCAAAAACATCTTATATGGTGGGACGGAGAGGGTAGCATTGTATGAAAAACATCAA
AAAAAGACTGGTGAGCAGGGGCACAGTTCAGAACCTCTTCTATGTTATGGTTTGATGCGA
TATAACCATAGTACTCACACTGTGGGTGGCTCAAACTGAAAAGATGGGGATAAAATGTTG
AATTAATAAAAAGCTCCGTGTTTCCTTGTGCGTTGTATCTTGTTTTCCGATACATAAAAA
TCCCAGCTCTAAACCATGAGTATCCAACAAAAGAAAGCATGCCTGATTAAATGAAGAACA
TGCGGTAGCCAGCAGCATTCCACAACATAACAGCTTGAGCATGCAATTGTGTCAAGATCC
ATCACCAAACCACACCATTCTTTATTAGCCCTTGCTGCCAATAAGTGGAACATGACAATG
TGATGGTTCATCTCGAGGACAGCAGACATAATAAAAAACTGTAGTAAACATGAGACGGCT
TTAGTGTTGTCATCTCTATGCTCCTGCCAGATCTCAAGGCATAGCAGACAGCAGCATCAG
GGAGATGTAATGGCATGATTCTTCATGTCCACCGATTAGATGCTGCACCACTGCTGTACA
CTTCTTCTGTATAAATAGACGGCAGCAGAACTGTACATACATCAAACAAGAAGCTCTTCT
TTTCTGCTTCTCCTCCTCTCATCAACCACAATACAGAGAAAAACATCAAGCTCAGAGATG
GCTTTCCACCTAAGATCGATAAGTTTGCCTTCTAGGCCTCACGTCAGTGAGACCGAAGTC
GAGCAAGAACTTCACAGCTTAGAAGCAAGCATCTGTTCCTCCAATTCCATCAGTACGATG
TGCGATGGTCTCAGGAGTCTTGCAAACATCTACCATGCTCTTGAAGAGATTATTTGCTTA
CCAAGCAACCAAGTTTGCTCCTCCCAGCAGAGGAACATATTGGATGGAGAAATGGAAGCT
TGTCTCGAGCTGCTAGATCTCTGCAGCACTATGCAAGAGATCTTTGTCGAGATGAAGGCA
ATCATCCAAGAGCTGCAACTGGCTCTAAGGAAAGGGGATGATGCAGCTGCTCAAGCCAAG
ATCCAGTCTTACACCCACTTGGCGAAGAAGGCCAAGAAACATTTCAGGAAGACCGCGAAG
AAGGCTCCTGCAGCTTGCAAGATGGTCATGCTGTTGGCCAAGGCCAGAGAGATCTCTGTC
TCTCTGCTGGAGTCCACAATCCATCTCTTGTCGAAGCAAATCGAAATGCCAAAACAGCCT
CTTGTTTTCAAGGCATTTCACAAGAAGGCAGCTGTTTGCAAGGAGGAGCAATTGTTGGGT
CTAGAGGGCAGTATGGGAGATCTCGAGAGCGGTGCAGGACATCTGTTCAGGAAATTAGTC
CAGAGCAGAGTTTCTTTACTCAACATCCTTAGCTCGTAGATACTCCCAAGACGCTCTTGA
CACTCTTGACACTCTGATTGGCATCCACCTTTTAAGGAATAGCTGATCTTCATACAGTTT
CCCCATATTTCTACGAGATAGTATAAATGTAAATGATACTATAGAAAGAGAAACAGAAGT
TCTGATCCATTTGACCATTTCATGCTTATGTGTTTTCGTGAGCCTAGTATACTTTATTTT
AATGTCCTTAGTTAGTGGATCTTGCTTCTTGTGCATGAAACATGCCAGATCAAAGTCAGA
AGGTCTCAACTTGTTGTTAGCAGAATCAATCAATTTTATTATCCAGATTCTGTACCACCA
CCACATGTCCATATGGCTGTGCAGTCTGGCACTACAATTGAATATATTTATTGTTTCATA
CAACAAAGTCTAGATTAGTACTCTCAAGTATTAACATTGTCGACATCTATATCATTTAAG
CATTTAAGGTGAAAAATAACAAAAAACATTTATCGTAGAAGCACAACCTTTTGCATGTCC
TACAGGATTAACGATAATCTGAGCAAAACGTGATACAATCTTTTGCACTGATATTGTTAC
ATACAGTAGCCTTAGTAATGGCCTTTCTGAACAAGGGCTTGTGGAATCGGCCATTGAGTA
ATTTCTAAGTATGCCATGCAAGCCTTATATTTTTGGCTACAATGCTGTGCTGAAGGGTTT
GTGCAGACCTGCACGATGGGAGGAAGCTGGGGAGCTGATATCTAAGATGGCTAGAAAGGA
TTGTCCCCCAAATGGACTCGCATCAAAAAGGGCTTGTCGATCGTGCAATTGAGGTGTTTG
AGCAAATGCCAAAGTACGGAAGTACAACTAATATTTTCACATACAATTCCCTTATCAATG
GCTTTTCTGAACAAGGCCATCTGAATGATGCCCGCAAGTTATTAAGCACTATGTCGTGGA
AGCCCGGTGCCATTTCCTATAATTCTACATTGAAGGGTTCACATAGAGCTGAACAATGGA
TGGAAGCAGAGGAGGTTGTGGCTGAGATGCTTAGAAAGAAGTGCCCTCTAAAGGAAATAA
CATTCAATTATGCTAATCTATTGTTTATACCAAACAGGGTAACTTGAGTCAACCTTTGAA
ATCTCTTAAGAAGATGCCAATAATATAAAGTTATGCTTGGTCATCTACACTGCCCCTGCG
AAAGGCGCTTTTGTAAGCAAGAGTCTGAAGGATGCCCTGAGTTATGAATCAGTGCACTTG
TGCAAGCCTGCCACAGTCCACTCTTATGCTTCATCGAAGGATTTGTGTAGAAATGAGCAA
CAAGTAAATGCCAGAGTGTCTGGTTGAGATCAGCGCCGAGAGGTTAATCCAAGTAAGGCC
TCTTTTGGTTAGGCTGAAAATAGCCAGGATCATGGCCTAATCCACACTAGTGACAGAAAA
CATGATGTAGGCAACCAGAGGCGACAGGGGCAGAGTTGACAGAGCCTACACTTCTCGGGC
AAAAAAATTATTTCTCCTTTTCCCATAACTTGCACAGCTGAAATGAGATGACTGTGCCGT
CACCTACTTCTCTCGCACATGACCTCCGGCGGTAACGACAACGGTGGATTGGTCATTTCC
TGTAAGTACGTACACCATCCTCCGAAAATCTAGGGTTTGAGATTTCCATCTCTCCCTTCT
GATTCTTGTGTTGAGCGCCCCTGATTCTCCTCCTTCCCCTGCTTGAAAGAATTGGCGTAC
ATAGATCTTGGGCTGGAACTTGTTTATTATGTATCAATATGGATGTACTGCATGTTGCCA
CTTTTACTAGACATGCCTCTTTTTACCGATTCATGTTTGTCTCCTGTATTGATTCAGAGT
AGAATCAGCTATGTACCTTGCTTTTGTGAAGAGAAACTGTCTTTAGTTGAACAAGTGCTG
CCGATGCCATTCTTATAAAATTGTGTTATATATATATATATATATATATATACCTATATA
GATGCACTGGCTTTGCTTGCTTTCCTTCTCAAAGCATACACCAAGAGCCTGCATAATGCA
TCATCATTTTTCGCAGCTTCTCATCTGTTTGATTCACTGTTTCTGCAGATATTGCAACTA
CTACTAGCCGGAGGGAGCTTCTTGATTAAGGAACATACAGTACTATATTTTGTAGTAAGG
AGAAAATCCAGTTGCAACAAATAATTATTTGATTTTCTGTCAGTTACCAAGTGATCTCAG
ATGTTTTGTTCTGTCTGAAATGGTTGAAAAAATTAAAAACCATTGTATTTCTGAGTAATT
CTGAAAATCCATGGTTTCCTTCATATCTGGGTAATTCTTCTCATGCGCCATCTCCATGGG
AATTCTGGATCATGTGTATGTGTTACAATCCAAATACCTGCTCGGTCAGCTTCTGAAGAT
GGGAAGTTCAGAGTTCAAGCAAACAAAGGTATCGTTCTGAAACAATGCTTCCATTCCTTT
GGTTTCTTAATCTTGTGCAGTTACTTGATAGCTCTAGACTTTTCTAGTGGGGCTCAGGAG
TCTTATACTTTTACAATATTCTTTTTATATTTCAATCATTCTTGGATGATCTGCTAAGCT
TTTCTTGATTGTATCAATCCGTTATATATTCAGCAATCAAACCAAGTAAGTTAACACAGT
ATACCTACAAGTATGTTGTTCTACTTCCAGGAGATGTATTGGTTTCTATCTTCTGACCTT
TAGAAAACATATGTGCTCATTGAAACTGCATTGGTAAAAAATTAAGAGATAAATACACTG
TGAGTGCCTTAACTTGTCCGACGCGGTCACTTTGGTTCCTAAAGTTGCAAAATACGCAAA
ATCGGTGCCGTAACTTGTCCCTTCGTTCAAATATAGTGCCTCCTCGCGTATTCAGCCGTA
TGTAGCGCACAAGTGGCATGT