Contig Data
morexGenes
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Map Locations of contig_1563509 (5406 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1563509

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12540 1 328 bp AK249353.1 Available Available None
MLOC_12539 2 642 bp MLOC_12539.2 Available Available LOC_Os03g05730.1, FRAME:+1, EVALUE:2e-130, 13103.m00618 protein cell division control protein 48 homolog E, putative, expressed





CDS Structure of MLOC_12540






CDS Structure of MLOC_12539






Contig Sequence (5406 bp)

>contig_1563509 5406 assembly3_WGSMorex_rbca.fasta
AAAAAAATCAGAACACATTATGTGCCAACACTACCCATCAGAGGCCACCGCTCCACCGTT
TCCTAGCTGAAGTGGAATCTCGTTCACCTGATCACTTCCCATGGCTGAAGAAGGCCGACT
CCGTCCGGAGACTGGAGGCCGACTCCCCTTCCTTTTCAGCTCGGACTTGTACCGCAACTT
CGATTCGAAACGAAGTCGGAACAAAGCCCCCACTCCACGGAGGAGGAGAGGCTATAAAAG
GTAAGCCAACCCCCTCGAGTTCTTCCTCACATTGCACCACGAGGCCACGAAACTCAGCGC
GACGAACTGAATCGAATCGAATCGAATCGAGCATCTCAAATCCGCGTCCCATGGCGATCC
ACGGCGAGCCCTCTTCCTCCGATCCGAGCGGGAAGAAGGACTACTCCACGGCGATTCTTG
AGAGGAAGAAGTCACCGAACCGGCTGGTGGTCGACGAGGCCACCCGCGACGATAACTCCG
CCGTCGCTCTACACCCGGACACCATAGACAGGCTGCAGCTCTTCACCGGCGACACGCTCC
TGCTCAAGGGCAAGAAGCGGAAAGACACGGTCTGCATTGCGCTACCCGACGACACGTGCG
AGCATACCAAGATCCGGATGAACAAGGTCGTCAGGAAGAACCTGAGGGTGCGGCTCGGCG
ACGTCGTCTCTATTCATCAGTGCCCAGACGTCAAATACGGGAAGCGCGTGCACGTACTTC
CCATCGACGACACGGTGGAAGGGATCGACGGAAACCTGTTCGAAGCCTTCCTGAGACCAT
ACTTCCTCGAAGCCTATCGACCCGTCAGAAAAGGAGACCTTTTCCTTGTGAGAGGCGGGA
TGACAAGTGTGGAGTTCAAAGTCATAGAGACTGACCCTGCAGAGTATTGCATCGTCGCGC
CTGATACAGAGATATTCTGCGACGGCGAACCGGTCAGGAGGGAGGATGAGGAGAAGCTGG
ACGATGTCGGCTACGACGATGTCGGTGGGGTCAGGAAACAGATGGCCCAGATCAGAGAGC
TGGTTGAGCTCCCACTGCGCCATCCCCAGCTGTTCAAGTCCATTGGTGTGAAGCCTCCCA
AGGGCATCTTGCTGTATGGGCCACCTGGGACTGGCAAGACCCTCATTGCTAGAGCTGTGG
CCAATGAAACAGGTGCCTTCTTTTTCCTGATTAATGGCCCAGAGATTATGTCAAAGCTGG
CCGGAGAAAGTGAGAGCAATCTCAGAAAGGCGTTTGAAGAGGCAGAGAAGAACGCGCCGG
CCATCATCTTCATCGATGAGATTGATTCCATAGCCCCAAAGAGAGACAAGACCAACGGAG
AGGTCGAAAGGCGTATTGTTTCGCAGCTGCTCACTCTTATGGACGGGCTTAAATCACGTG
CCCATGTTATTGTTATGGGTGCTACCAACCGCCCGAATAGCATCGACCCTGCTCTCAGAA
GATTTGGTAGGTTTGACCGGGAGATCGACATTGGGGTCCCTGATGAAGTTGGACGGCTTG
AGGTTCTCCGAATTCACACTAAAAACATGAAGCTAGCTGAAGATGTTGAGCTGGAGCATG
TTTCGAGGGACACTCATGGGTATGTCGGCGCTGATCTTGCTGCCCTTTGTACCGAGGCTG
CTCTCCAGTGCATCCGTGAGAAGATGGACGTTATAGACCTCGAGGATGACACCATTGATG
CAGAGATACTGAATTCCATGGCTGTCACGAACGACCATTTCAAGATTGCGCTAGGGACAA
GCAACCCATCTGCTCTTCGTGAGACCGTTGTCGAAGTTCCAAATGTCTCTTGGGAGGATA
TTGGTGGCCTGGAGACCGTCAAAAAGGAGCTGCAGGAGACCGTCCAGTATCCGGTGGAGC
ATCCCGAGAAATTTGAGAAGTTTGGTATGTCTCCCTCCAAAGGTGTTCTGTTCTATGGAC
CTCCGGGCTGTGGTAAGACCTTGTTGGCCAAGGCAATTGCTAACGAGTGCCAGGCTAACT
TTATCAGCATCAAAGGGCCAGAGTTGCTTACCATGTGGTTTGGTGAGAGTGAGGCCAATG
TGCGTGAGATTTTCGACAAGGCTAGGGGGTCAGCGCCATGCGTCCTCTTCTTTGACGAGC
TTGACTCAATTGCCACTCAGAGAGGAAACAGTGTTGGCGATGCCGGAGGTGCCGCCGATA
GGGTGCTGAATCAGCTTCTTACCGAGATGGACGGGATGAATGCCAAGAAAACCGTGTTCA
TCATCGGCGCTACCAACAGGCCAGACATCATAGACCCTGCCTTGCTCAGGCCTGGGCGCC
TTGATCAGCTTATCTACATTCCTCTACCTGATGTTGAATCCAGGCTCCAGATCTTCAGAG
CCTGCCTCAGGAAGTCTCCTGTGGCCAAAGATGTTGATTTGAATGCTCTCGCCAAATACA
CACAGGGGTTCAGCGGTGCAGATATCACTGAAATCTGCCAGCGTGCATGCAAATATGCCA
TCAGAGAGAACATTGAAAAGGACATGGAAAAGGAGAGGCGACGCAAGGAAAACCCTGAAG
CCATGGAGGAAGACGAAATGGATGAAATCGCTGAGATCAAGGCTTCTCACTTCGAGGAGA
GCATGAGGTATGCACGCCGGAGTGTGAGTGATGCCGATATTCGCAAATACCAGGCCTTTG
CTCAGACGCTGCAGCAATCACGTGGTTTCGGCAGTCAGTTCCGTTTCCCTGACCAGCCGG
TGGCAGGTGCTACCACTGCGACCGATCCTTTTGCATCCGCTGCGGTGGCAGCTGAAGACG
ATGATTTGTACAGTTAAATTGTCTGCTGTGCCATGAACTTAGCCTAATTCAGTAATTTCC
TTGTTGTACTTATTTATATTATGCTATCATCTGTAAGAATGGGAAGACCCTGTAATTATT
TTACGTCCATGTGATATATAAACTTGTTTTTTGAATTTTTTGTGATATATAAACTGAAGA
TTGTATCCTTCACCTAAAAGATAAAAGCATTACCTAGTCTCCGATTCCAGTCTGTGTGAC
AAGGTTATTAGCATCATTGTATGTGATGCTTTTTTTCTATTAAATTTACTAGTCCAATTA
CTTTCACTGTCATTGCTAATAAACCTTCTGTTATACTGCCCTTTGGTTTTTGTTTTGTTC
TTTTGTTGCAAATGGTTAGTTGTACTGAACAATTCCACAGCCTCTCTGGAATGTTGACAA
ATTAGTTTAGCATTAGCTGAACTTTTAGTCTATACAAAATGTACCAATATCAATTTTTGG
ATTCTCCAACGAAGTAACTGAAATAATTCACAACTTAGAAGGTTATATCCGTGTTGATGT
TGATTAGCTATTCACTGCCTTTGGCATCTTCTGGCGCGGCAGCTGAAGGCGATTATATAT
TTGAATTGTCTGTCGTGCCAACTTGATGTAAATTTCTTGTTTCACTTGCTTATGATGTCA
TCTGTATAAGACACTGAAAGGCCATGTACTTACTTTTACGTTCATGCTCTGATATAATGA
AGACTGTGTCTTCCACCTAGATGAGAGAAAAAAAACTTCACCTGTCTCAGTTATGGAAAA
AAGATTAATTAGAATGTCGGTGTGCTGAATTTTTCTTTTGTTCATTGTGTACGAGTAGGC
ATTATAGTCTCTAAAATCTACAATGCATTGATCTTGATTTTGGGATTCTCGGAAAAATAA
CTGGATTATTCAGGTGGATGTTGATCAGTTATTCATTGTCAGGCCAAGTTGGTTTCCACT
GAAATATTGATAGGAGCCATAAAGGACACATGAGAAGAATTGTTGTTTGGATGTTTAAAC
CTGTACAAATTGCTACCTATATACTATCTTATTTGATATCTGAAATCTGTAGAAAACTAC
AGATATAAGCTCTTGTTCATGGTAAGCATGTGTGTAGTAGCAGAGACACTTTATATATGT
ACTTTCCGTACTATAGTTGGCACCGACCTCAACTTTTGGATTCTCCAAAAAAATAACTGG
ATTATTCATGTTGATGTTGATCCGTCATTCATTGTCGGGCTAAGTTGCCTTATGTTGAAA
TATAATGACGATCGTCTTTCACCTGGACGAAATAAAAACATCACATGTCTCAACTATGTG
GAAAGTAATACTTACAACCTTTGATGTCCTACTGTCTCGCTGTCCAATCTGTGTAGAAAT
TGTTCTCCCCGTAGACTGTAGTACGTTTGCTGCTCTACGGGCTGTGTTGAGCTGCTGGTC
AGAGGAGAACAGTGACACACTCAGTACCTGAATGTCAATGCAATGTATTAGACTATTAGC
ATCCGATTACATGGCAGGTACAGTATGATAAAAGATCAGCATTATATCTTGGAAACCATG
GCTGTGCAGCATTGATACATCTGCTCTGACGTACAAAAATATGTAGCAGTTTGCAAGTAT
GAAATCAGCTCTCCTGCGGATGAACATGGACTGTTCTAGGGTAAACGATGAAAAACAGGA
GCCAGGTTTTCTTGATGGTTTCAGTATAGCCTCTGTAGGCCTACAGGGATAAATATCAGA
TCACCAAATCAAGAAGGTAACTTGAAAGTTACAAATGATGTACTCACCAGCCAGTCTTGC
AGTTCAACGATCTCTGAATTGCTACATATCTGTAAAACATTGATAAAAGACAGTTACAGA
AGTTGTAGGTGTTCATGCCATCATTGCCAGTGTACATAGCCTGCAACACCAGTCTTCTCT
TAGAGATTTGGTATCTTTATGTCACAAATTGTACAAATCTGTCGAATTCGTAGTTGTTTT
TCAGAATATCTGATTGCTTATCGATCGCTGCAATGCAGCTGGCTCTCAAGAAATGTCCAA
TAAATGGAACCAAACTGGTTTCTTCAGCCAATTTGACATATGATTCTCAAGGTTTCCGAA
AGCAAAATCATATGGTAACAAGAACATAAACATCAACTACAGTCACATAACAGAGATCAG
TCAAATAACTAGGACATGCATAAAACGAGTAACTAGTTCAAAACCTAGGTTTCCCAAAAG
ATGCAGCAGACCAATACTAGTATTTCACATCGATCAGTTACATGACACAGTAACATCACC
AACCCAGCTACTCCACCAATTTCCATTGAGCAACCCAAATTCTAGATAAACAGCACCCAA
CTACAGTTGCTAGAGATGCATCTAAGAGGAGGTGAACTTTGTGACTGCCTTGGTGCCCTC
GGAGACGGCGTGCTTGGCGAGCTCCCAGGGAGGACGAGGCGGACGGAGGTCTGGATCTCC
CGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCAGCCTCCCCGGCGAGC
TTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCG
ATGTCGGGGTGGACCTGCTTGAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACGCTC
TTCTTG