Map Locations of contig_1563476 (6747 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1563476

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12526 3 2903 bp AK358660 Available Available None





CDS Structure of MLOC_12526






Contig Sequence (6747 bp)

>contig_1563476 6747 assembly3_WGSMorex_rbca.fasta
ATTTCACTAATGGTCTACATACGAAGCAAAATGANNNNNNNNNNNNNNNNNNNNNNGTCT
ATATACATCTGTATGTAGTTCACTAGTGAAATATCTAGAAAGACTTAAGTTTAGGAACGG
AGGGAGTACAAGGCAATGTTTGTCAAATATCCTCGCAAAGAAAAAAAATAATAAGGTTCG
ATGTAGGTGGACACACATCATGCATCTACGAGTTTGATGAACTAGTATGCCGGCTAATGT
CCCAAAATAAGCATCAAAGTCTAATTTACGGTTACCGAACCACACCATGTCGATGTTTTA
TAAACTTTCATTCCAAGGCAAATCAAGTTTTTTTCTCAAAAATAAACAACCTACATATGC
ATATGATGAAGTAGTATGCCGGCTAATGTCCTAAAATAAGCATCAAAGTCTAATTTACGG
TTATTGAACCGCACGTGTCGATGTTTTATAAATATATATTTCAAGGCAAATCAAGTTCTT
TTCTCAAAAATAAACAAAGCAAATTAAACCGTGTCAATCTTACTAACGCGTGGAACCCAA
CAAAAACGAAACAACATCGCATTTTCGCACAAAATTTATCGCATGGAGGAAAACCAAGAG
GTAGCATTGGTTGAGTGGTTATCACCAATGCACTCAACCAATGCGTGTGTGAACCCGCGT
GTAAGCATAGCAATATCGCTTACTAATTATTTTTTTCTCGTCCGTGTACACTGTACGCAC
ACCCTCCAACCCTGCCCGTTGCAGTAATTTATTCCGCTCCAACCAACTTAACCGGAGACG
CCTCCGCCTCCCTCTCAGAGGCGAGCTCAGTCCTCACTCCACGCCCGCGTCTCCTGCTGC
CTCCTCCTCCTCCTCGCCCGGTTCCTCGGATCATCATCGTCACCCTCCCCATGGCTTCTC
CGAGGCACTCTCTTTGATTAGGAGGGAGGGGGGGAAGAGGTCGATTCTTTCAGGGGACGA
CGTACGTTCGTCGATGGAGATCGAGGAGGACTCCGGCGAGACGGCGCCGGAGATGGAGGT
GAGCACGGTGGCCATCGCGGTGAGCGGGAGCAGGAGCAGCAGGCACGCGCTCAGGTGGGC
CCTCGACAAGTTCGTGCCCGGCGGGAGGGTCCTCTTCCGGATCCTGCATGTCCGCCCGCC
CCTCACCATGGTGCCCACGCCAAGTCAGTCCTCTCTCTCATTTATTTTCCATTTCATCTC
CGCCCACTGTCTGAATTCACAGTTAATGGTGTCTGAACAAGAAAAGAAAAGAAAAACAGT
GTTAACAGATCATGAGCCTTTTGCTACTATGACTGCTAGTTCTTCTCTCTGACTTTTTTT
TTCCATTTCATCTCTGCCTCCTATCAGTAAACTGTATGAGTTTACAGCTCTTGATGTCTG
GACAAGATTTTTTTTTCCAGTTTTAATAGTCCATGAACCTTTTGCTACCATGACTGCTAG
TTTACTTTTATTTTATTTTTAACTACAATTTCAGACTGGCATTTTTTTATTTTTTATTGA
ACAATGACTGGCATTTCTATGCCAATTGGATAGGTTAGTTTTGGTTTTGGTATTGCAAGC
TTCATACTGTTAATCAGTCCCAATAATTGATCTTGGAAGTAGCAGCATCTATGAACAAAT
TTTATGGTTACAGTGTCACAAGGTCACACCCACCACTACCCAGGGGCACCAACTGCAGAG
TGCAGAGTTTTGTCCTTTGGCGGACTGCATTATCGTTAGGTTGATGAATATGAACCTTTG
TTGTACCAAGTGTGGGCAACATGTGATTAAGAATATACCTGCTGTTCCTAACTAATCATT
CAGAACACTGACCTGCTCTTGTTCCTCTGATGACAGTGGGCAACTACATCCCGGTCTCGC
AAGTGCGCGACGAAGTAGCTTCGGCGTACAGAGAAGAACTGGAATGGCAAGCAAGGAATA
TGTTGCTACCGTACAAGAAGATGTGTGCTCAGAGACAGGTTTCAATTGGCTTGCTAACAA
TTACGCAACTTAGCATGACAGTTGAGGTTCACACAAGTCATGATAGTGTTATGTTTGATC
AACAGGTGGAGGCTGAAGCCGTTTTACTTGAATCTGATGATGTGCCTGCTGCTATAAGCG
AGGAAATCGACAAATTCAACATTGGCAAGCTGGTCTTGGGCTCTTCGTCGAGAAGCATAT
TCCGAAGGTACATTCTGATTGTTGTCGTTTCAGCATAAGAAAACTTTTAGGATGATTAGC
TGGAGCACTGTGATAATAAAATATAAATAGTCAGAAAAGCTTAAGCATTTGGTAGGATGA
TCATTGTCTTCTCATTTAATTCCCCAGCTACCAGCCTAACACTGAATGTTGCACTGCAAC
TACTTGACTGCGAGTTTATGTGGAATTTTGGACAAAATGTAAGATTAGTAGTAACTCTTC
ACCAAAAAAAAAGGCATTATGTGTTGTAGGGACTCCACTGACTACATGCTCCTTTAGCGT
TGGTCAAAATTTCCAAAAGAAAAAATTGTACCAAAGGGAGTACTGCGCTATTTTAATGAT
GATTCGGCTTGACTAGGATTTCACATTAAGAGACAATTTTATGGAGTAAAATAAGTTTAT
CAGCAGTTATAATAAGAAACCACTGTGATACTAATCATGTGTTTGACATCGTTAACTATT
TCTAGGAAGCTCAAAGGAAGCAAGACTGCAACCAAAATATCTGAATGCATTCCAAGCTTC
TGTACAGCATACGTGGTTTCAAAGGGCAAACTTTCATTCGTGCACTCGGCTGCATCTGAT
AGATGTGAAACACCCAGGTCCATTTCTTCTTCAACCGTTTCCTCTCCTAGTTCCACAAGC
CTTTCCAGTGCACCCTCAGGTGATGCTCAAGTCTGCATTTGATTTTTGATTCAGAAATTT
GTTGGTCACGACAAACTTTCAGGAAAATGCCTTGAAAAATCAGGAACATAAATGTATTAG
TCTTACTAACGACTCTGTCTACTGCAGAATCGGCTGACAGAAATGGAGCGGCAGCTGTGT
TATTCCGCCAGTCTTCTCTGTTATCTCAGCGTGATCACGCACTTGCAAACATAAACAGAT
CAGCTAACAGGGGAGCTAGCCCTTCAGGCAGTGCTGGCAGCGAGATCTCTTACCATGCTG
ACACAAACCCAGTGTCAAATTCACACTCAATCACATCGGTAGCGCAGTTCAGTAGCAGCA
GCAGTGGGGATTCAGTTTATAGGAGCTTCCGAAGAGATAGTTTCCCAGACACCTCTGACC
TGCAGGCAGCAGTCTCAGAAGTTGCAACAAACCTCGAGCACTCTCATGACAAGGTAGGAA
TTTACCATTTAAATAAAAACAGTACGCCCTTTGCTTCAGCAAAAACAAAAAGATAATGGC
AGAACTCATCTCTAGGCCTAAGCATCATACGATGCACACAGCCAAAGTAACAAGTGTGTC
CAAGTGAATGTGCAATTTATGAACTTTCTTTGCTAAGCAGGATGATCTGAAGCTTCAAAT
TGAGAGTATGAAGGTCAAACTGCGACATCTTCAGAAGCTTCACGAGTGTGCTCATACCGA
ACCGGTTGACTCCACCCAGAAAGTAAGGGTTTACTTCCAACTGATCTATAAAGTGCGTAA
TAACCTGCAAGGTTTTTAACCGTTTCTTGTTGAAACCTCGCTGTATTTTAGTTACACAAC
AACTTGGGCATCCAGCGTGTCGCGGACGAAGTCAAACTTCGAGAGATTGACCTGACAGAA
GAAATGGTGAGGAGATTGCTAAGGCGAATGGAGAGAGAAGAAGAGGAGGCGGCCGAAAGA
GAAGCTCAACCTATACAAAGCTCTTCTGAACATAAAGCAACAGAGGGTGATGGTGATCAC
CAAACTGCTGGAGAGATCAACACAGGACTGAAAAGTGCCGGACGATGTTTAACCAAGTAT
AATAGGTACTCATGGGAGCATATCCAAGCGGCGACTTCGTCGTTTTCGAGTGATCTTGTG
ATTGGTAAGGGGACATATGGAACAGTCTACAAAGCTAAGTTTCAGCATACAGTTGCAGCA
GTGAAAGTTCTGAACTCCCTGGAAGGTTTTGGAACTCAGCAGTTACAGCAGGAGGTATAC
CGTATTTACTTGCCAACAAAGAACTGTCCTTTACTAGCTGCTCATTACACCGAACATGAT
TTTCAGAAAACATAATTAGGAAACTTTAAGACATTCCTGAGCTAATATTTGTAATTACTT
CTATTAGTAGGTGAGAGCCTATAAATGAATATCGCTAATATGAACTTTGCATGTCGCCAA
AATGAGGAAGTAAATCATTTTTCATTAAAGCACAATGGTAAACAAGAGAAAATATAGTTA
TTTAAATTAATGATATTTATATTTCTATCTGGCTAGGCTACACAATGAGGCCATGTTTCT
TATTTTCAATTTGATTTCAAATTTTGATTAAAATATTCATCCTTGACCTCGGACAGTGAG
ATCAGATATCCATCTTACATCTTATTTAGAAGGTAAGAGAAGCATCTTAAAACCGCTCAA
GAAAATTAAATCCAAACAGGGATGCAATGATTCATCAAATAAGTTTGGTTAACACCAGAC
ACACACCTATGACTTGTATTTTAAAGTTTCAAAAAAATCTGAAAAAATTATGGGATGTTA
AGAGTGATGTTTTATTGCCGGGCAAAAATTCAAGTTGAAACACATTATGGGATGTGAGCT
ATGAAAAAGAAAAATTCAGCCCTAAATAGTGACATTACTATTCGGTACTATTCACCGTTA
ATTTTATCTTTTTCATAGCTCACATCTCATAATATGTTTCAACTTGAAATTTGGTGTGGC
AATAAAACATCATCCTCTTAACACCCTGTATTTTTTTAGTTTTTTTTAACTTCAAAAAAT
CTTTTTTTGTGTGGTTTTCACCGGTATCCACCAATGTTGGTTTCCGTACGATATTCTTTC
AATACAAATGAACTGTGACTAGAACATTTTAAGGATTTCATCAAATGAATTTGGCAAAAA
CAATGGTTTTTCAATCAAAATCAAAGAGAATTCCAATTCAGCTTTTAGATATGGTCAAAT
GGACTGTCACTACAACATGTATCTGTGTTCTGAACTCTCGTTTTGCAAGTGGTCATCTCA
TCTTAAATCTATGCTGCATGCAGCTGGAGGTCCTGGGCAAGATCCGGCACCCTCACCTGT
TGCTGCTGCTGGGCGCGTGCCCGGAGCGCGGCTGCGTGGTGTACGAGTACATGGAGAATG
GCAGCCTAGACGACGCACTCCACCGCGGCAACGGCACGCCGCCGCTCGCCTGGTACGATC
GTGTCCGCGTCGCCTGGGAGGTGGCCACCGCCGTCGCGTTCCTCCACAGCGCCAGGCCGG
ACCCAATCATCCACCGCGACCTCAAGCCGGCCAATATCCTGCTCGACCGGAACCTCGCCA
GCAAGGTCGGCGACGTTGGCCTCTCCACGGCGCTGCTCCGCCACCCAGGCCCTGGAGGAG
GAGGAGGCCAGCAGCAGTCGACGATGGTGAGGAACACGGCGCCGGTGGGCACGTTCTGCT
ACATCGACCCGGAGTACCAGCGGACTGGCGCCGTGTCGGCCAAGTCGGACGTGTACGCGC
TCGGCGTGGTGGTGCTGCAGCTGCTCACGGGGCGCACGTCGCCGCTGGGGCTCGCCCATG
CCATGGAGACCGCGCTGGAGGAAGACGGCGATGATTCCTCCTTCGCGGAGATGCTGGACG
CGGCCGCCGGGGAGTGGCCGCCGGAGGAGGCACGGGAGCTGGCCTTGCTGGCGCTGCAGT
GCGCGGAGATGCGGCGCAAGGACCGGCCCGGGCTACACGAGCACGTCCTCCCGGCGCTGG
AGCGGATCAAGGGCGTCGCAGCCAGGGCCGCCAGGGAGACGAAGGCCCTTTTTCTCCGGT
CGGTGTCAGCTGCGGCCGCGGGGGCGCCCGGGCATTTCCTCTGCCCCATTCTTCAGGAAA
TCATGGAGGACCCATGCGTCGCCGCCGACGGGTACACGTACGACCGGAAGGCGATCGAGA
CGTGGGTGAGCATGAAGGACAAGTCACCGATGACCAACCTGCGGCTGCCGAGCAGGAGCC
TCATCCCCAACCACTCGCTCCGGTCAGCGATCATGGACTGGAGGTCCAAAAACACATGAT
GATCAGATGATATGAAGTAGTCTTCGCAAATACTACTATAGATTTAGTGTTGTGTTGTGC
AGCCATACTGAAAATGTGAATGTGGACCCTCAAAAGAAAATCAAAATGTGAATAAACAAA
AAAAAAATGCTCTTATGGTTTGTTTTTTATTTACATTAAAATGAAAAATATCCACCAGGG
AAAAACCTACTGTTCTCCTAAAAAAACATTTGTTTTCCTGAGGTGTACGGTTTTGCAGAC
TTGTTGAGAATTATCAGATATCTCAGTTATAGAGTATAAATCAGGATGCTCACATGAAAC
GAGGTAGAAACGAGGTTGAAAGATACCCGGCGACACTTGGTTTACAAACGCTGTTACATG
ATAGTATAATTCAGCCAGGTTTAATTACCTACTTCAGGTTTTCTGTCTTGCCAAATGCCA
GCATCACAGAAGCTTAGAGAAGTTTCAAAGCATTTCGGTGTAAGAAACAATCTTTAGAAC
ACTGAAGAATCATAAACGATTTCCTGGTGCCAATCTATACTATTAAAGGGGATCTGCCGT
CGTCGTGATGGTTCGACCTCGTACGATCCCCACTTCCTCCCACTAACACTTCCATCGATT
TTTTTTCATCCCTTCGTAAACCAGATG