morexGenes - Barley RNA-seq Database

Contig contig_1563464
Source Contig contig_1563464
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563464 (7015 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563464

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12521	7	2813 bp	AK360376	Available	Available	None
MLOC_12522	4	1099 bp	MLOC_12522.2	Available	Available	LOC_Os03g15850.1, FRAME:-2, EVALUE:2e-103, 13103.m01863 protein josephin, putative, expressed
CDS Structure of MLOC_12521

CDS Structure of MLOC_12522

Contig Sequence (7015 bp)

>contig_1563464 7015 assembly3_WGSMorex_rbca.fasta
CCCACCACAAGTGTTGGCGCACAAGGCGCTGGCCGGATTATAGTGTGCTAGATTGGATCA
GATCAGATCGAGGCGCTCTGCACGCCGCCGTGCACAATTGGCCCGCTGGATGCATGATTT
GTTGAATTTGTCGCGTCTTTGATCTGCCGACGAACTCCCGAGTCAATGCCTTTTCCTTGT
TGCTGTCTCGCAGTTACATCTCCGGGTACAAGAACCGGTTCCAGAACTTCATCAAGCATC
TGCGAGAGATGGGCGATGAGGTATCCAATCCTTGTTACCGACCTTGTCGCTGCTTGACTT
GACTTGTACTGTTTTCAAGATCGTTGTCCTACCTCGGAATTGACGCCTGCTTATTCGGTT
CAGGTCTTGGTCGTGACCACGCACAAAGGAGCTCCCGAGGAGTTCCATGGAGCAAAGGTC
ATTGGCTCGTGGAGGTAATCATCCAACACAAACTATCGTCGCCCTCTACCTCATCGATCA
GTCCACTCGAGAAATGCCAAGCGATTCCAACAACTACTTTGCTCAAAGCACAGAACGCAG
GAAATATGATGAAACATTTGCAGAGGAGTGTCCTGTAATCAACTGCCATGCTGATTACAA
CACTTGCTAGATATATCGTGAAATGGATGCTATATTTGTTTTGAAGTATTTTTCCCAGTC
AACTTTCTAAATTTGGAATGTCGTCAGAGTTCAGTTTGTGGAAAACTTGTTCATCTTGCA
TGTACATAGGTTGCCTAAACACCTCATTTTCAGCTTTCCATGTCCATTGTACCAAAATGT
TCCACTCTCGTTGGCATTGAGCCCCAGAATATTTTCTGCGGTGTCAAAGTTCAAGCCAGA
CATAATCCATGCTACCTCACCTGGTGTTATGGTAACTGTCAAAAACTCAATATGCATCTA
TTGCCTTATGCCCTGTTGTTTCTTATTACCACATATCATGATTTCAGGTTTTTGGTGCCC
TTGCTATTGCAAAGATGATTTCAGTTCCAATGGTGATGTCTTATCACACACATCTTCCAG
CGTGAGTTTCTTTTCCACTGCTAGGTGTCAGCTGGTTCAGGGTTGTTGAGAGATTTGCAC
TTTGGAATTGATTTCTTGTAACGTCTTCCAGGTACTTACCAGGTTACAATTTAAATTGGT
TACTTGGGCCCACATGGGGTCTTATAAGTAAGCCCATTGTCATCACTTCTATTTATGTTC
TGTACAAAAGTTCGAAGCTGAGAATAAAATAAAACTGGTCTTTCTCATTTAGTTTGTGCT
GACATTCTTATTTTGTTTCAAAGAATGTCTCCACAGGTCTGCAGATCTTACTCTAGTTCC
TTCAGTAGCTATTGCCGAGGACTTTGAAACTGCTAAAGTAGTACCAGGTTAAACAATCAA
AATAAATCTCTATTTACACATTTCAACCCTTCGTCTATCCTAACCATACCCACTTGCCTC
TACAGCAAACAGAGTACGGCTTTGGAACAAGGGCGTTGATTCTGAAAGCTTCCATCCTAA
ATTTTGGAGGCATGAAATGCGGATCAAGTTGAGGTATCACCTGTTGCTTCAAATTCAACA
AGGAAAGAGTTGAAGAAAAAGAACACGCATGCTTACTGATTTTTCTTTTCATCTCCTGTC
AGCGGTGGTGAACCAGAAAAACCATTGATAATTCATGTGGGCCGTTTTGGGCGTGAAAAG
AATTTGGATTTTCTGAAGAGGTTAGCTTTTCCCATACGCAGAATATACCATCATTATTAG
AAATATAGACATTTTGAACTACATGGAAGTAAAATGGATAGAAGTGAAAGCCATGTGGTA
TATTTTGCATCCATGATATTTAGGTATCATAGTATAGTAGCTGTTTTTTTGCTGCTTATG
GCTGTTAAAAACTGCAATACTATAATTTTCTTTTTGTATGATCAACTTATCAGTTGTCCC
TATGTAGCATTTTAGCTTCAAGTGTGCTCAGAATATAACTTCTGCTCTTGTTTTTTATGT
AACAAAGTGAGCACTTCATGTTAGCACTACTTAAACCTTTCCTATCTGTAGAGTAAGTGT
TTGCTACACGAGTGTCATTTTTCTGTGTTGTTAGTGCTTTACTTATTTGAATTGTCAATA
CAGAGTTATGGAAAAACTCCCCGGAGTAAGAATTGCTTTTGTTGGAGATGGACCATACAG
GTGAGTCATTTGTCCAACTGTTAACTATTTGCTGTTTTCAGGAAGACACAAACCTGATGA
CATGTGTGCTTATGTTCATCAGCAACTATCCGGTATTGAAAGAACATAATTTGGAGAACC
TTGTCACAAGTTGCGGATTAGTATTCCTTTTTTTCTGTTTCTTTGAGTTAATTGTATACA
TTGTTTCACCTGAGGGTTTGTTTCTTCAGTAAGTTAGAAACTCAGAGTACTACTGAAAAA
GATACTTCTGGACTAAGCAAGTAAGCTAGTGCAGCCAGTAAGTAAATTTAACACATGTCC
ACAAACAATAACAATGCTTAAATACCAAATGAGAACATAGCATGCTTTGTTTGCAATGAG
CACTGAGCAAGTGATAACGAACTTATTGTGCTAGGCCATCTGTTTGACCCCGTGGGGTTT
CCTTTTCAATTCTGGAGGCGTTTACACCATCTGTTTTATCTTGGCAGGGCTGAGCTGGAA
AAAATGTTCACAGGCATGCCTGCAGTTTTCACCGGAATGCTCCAAGGCGAGGAGCTCTCG
CAAGCGTATGCCAGTGGGGACGTGTTTGCAATGCCTTCAGAGTCTGAGACCCTCGGACAA
GTAGTGCTGGAGTCCATGGCTTCTGGAGTACCGGTTGTGGCAGCTCGTGCTGGAGGCATA
CCTGATATAATACCCAAGGACAAGGAGGGCAAGACCAGCTTCCTCTTCACACCCGGGGAT
CTCGACGAGTGCGTGAGGAAGATCGAACAGCTCCTCTCGTCGAAGAACCTCAGGGAGTCC
GTCGGAAGGGCTGCCAGGGAGGAGATGGAGAACTGCGACTGGAGAACGGCCTCGAAGACG
ATACGCAACGAGCACTACCGCACCGCGACGTTGTACTGGCAGAAGAAGACGGGTAGAACG
GGGTAGGCGTCGTTTATCAGGCCAGGCACTCCGTTTGCTGCCCTGCCTACTGTTATACAA
CCAAAGGATTTGTACATTGTACCCCAGCAGCAGCTTGCGAGCTTGTATGGCTAGCTGCAC
TCATATGTCCACTGTTACGGATGATTGACCGGCCGCTTGTATGCAGTTACTGTACATTAC
AAAGTTCTTTGAAATTGGCCATTTCCGTCGTAGTGCTAGTTTGTTTCTACTAATTACTAC
CTCTGTTTCTAAATGTAAGAGAATTTTGCAGTTCAATAAGGTTGATGCAAGGGCTCTCTA
AATTTCCAATGCATTAACCCACTAGATTTCAAAGTTATAGATATCGAAATTAGAGGCGGT
GATAGGCTTAAACAGCAGCAGCACCACCACATGACCAACAGGAGTAATATACAAGGAAAT
ATAAAACTCAGAGCAAATGGTTCAAGATGTAATGTACACATCAAATCGACAAAATAGTTT
TCCCACAAGCATATACACTTCAGTTACAAAAAGACAAAAAGGCATATACACTGCCAGAAC
AAATTCTCCTTTCCTAAGCTCTGCATACACAATCTCAGAAAAGGGAAAACTTCTATCATT
CTATGTATCTGAATTCCTATAGGCGCGCCATGATTCTCACAAGGATTGAAAGTTGCAGAC
GCAAAGGATCTCATTGTCAATTCAGAAACATGGGTAAGGGGTAAATCACGGAGGAGAAGC
CATTCGCTGTAGCCTCTCGAGATCTTAAGCAGCGCAATCATTCGTCTTGGAGCACGAGCA
TGAGCTCTCCGCCTTGACTGAGAACGCTGCCCAGGAACGCAATTAGTCTTTCTTTGCATT
GAAATGGCTCGGCCGACGGAAGATCGCTGTCCAAATTAAACCAGACGCCATCAATGCTTC
GAATTGCCACCCAATGCCTCCCGGTCCACAGACCCCTAAACCTCCTGACGGGTACATTGA
TCATCAGACCCACCAGCGCTTCAGCATCCAGATCTATCGAAGATGCCCCCTTCCGATGAT
CATGCCAAACCACCTTCTTCTTTCTAGATTCTACCGCCGCGATAAGAACATTTACATCAT
AGTTCCCGGTTAACGCATTGTGGTGGGGCTTCCATATGAATGATAGAGGAGTCCATTTGT
CCTTGTTTGGACCATTAAGAACAAGATTTTCAGCAATACCATCCAGCTCAGCTCGGGTGA
AAGATTCTTTTTCCTGAACCACACGAAACACAGTTATGGCAGTTAAAACATGGCAACCGC
AGATTAAACAAGGTGGTTCAGAGCAAAGAAACGGACTCTGCACTGTATGGTGAGATCATG
CTACTTGTATATATGTTGATGGTGACGATTGAGTTAATATCATATCTCTTCTACTCCCTC
CGTTCACAAATGTAAGATGTTTTAGATATTTCAATATGGACTACATACGGACAAAAATGA
GTGAACAAACCAAAAATGCCAAACGGAGACCAAGCTCCATGGAGGACTTTATTTGAAAAC
ATCAAAATTCGAAATTTTCAGTTTTTAAAAATTCTGAAAATAAATACACATATACCTAGA
TACATAATGTACATATGTGCAAATTTTCAGGTCGACATAGATTAAAATGTTAGCTACACA
AAAGAGACAAATCTGATGCTTTTTAGCATATGTACCGTTCATCTTTAAAGTCCATGATTT
TGTTTTTTTGCGCAGCTCGCAATTCAAGGTATTTCATCCTGAAATTTTTCACACATATAC
TTTACATCCTTGCATACATGTGTGTTTATTTTCAGAATTTTTTGAAATTGAAATTTACGA
ATTTATGATTTTTTCAAAATAAAGGACTCCATGGAGCTCGGTCTCCAAAATGCCCTACTC
ATGAACAAACACACTAAAATGCGTCTATATACATCCGAATCAGAAAACAAGTTAGTATAA
CATCTTATAATAGTGAGAAATAAAGCAATAAAAGCCAATCAGGTAGTAGCTTAAATACTT
CTTACTGATGTGCCCTCTTGGCCTCTTTCGCTCACATAGCTGCAAGCGTGCACGGCCTGG
TTCCCCAAATTCATGTCAGCGTCAATTTAAACATCAACAGGAAACTTGACCGAGACCAAA
AGATTTGTTTCTAGCTCTATCAGCTACGAATATATTTATTCACGCGCACAACTAGCAACG
CCTTCATTTGTATTCGGTGGAACAGTAGGCTGCGAAGCGTACGCATAAACCTATCATCAT
CAACATACCTAATGAACGAACAGTGCCGAATGGGCAAAGAATTGATGGTGACCTCATTTG
TTGTCTCTTTTTACTGAGAAGGTACATCTTTGCATGTTTTCAATATGTCCTGATCTTACC
ACAACACAAGTTGGAACACAATCACATAGTAAAAAAAACATGCCCACCAAGGGCACAACG
CTCCGCTACTACAACGATCCGTAGTTTCATGCCGAGTAATTTGACTAGTTAGTTCGCAGG
TGCGGGTGCTGACCGCCGATGTACCTAGATCGGAGTAATCAGGTGAACAAGAAAGCAAGA
TAGATACACAGAATCTAATTTATTGAACTCAATTAGTACTAGTACTAAACTTAGGATTAC
GCAAAGTTCTCAGGTGCAGCCACTCGAGAATCATGAAAAGAATAGCAAGAGAGGAGGAGG
GTCACCTGCATAAGGTTGTTGAGGGCGTGGAGGAGGCAGAACTGCATCCTCTGCCTCTCG
TGGTACACCTTGCTGCCGCCGCCGCTGCTTCCCGCCGGACCCGGCCCTTCCTCGTCTGGC
TTTGCTTCTGATCTGCCTCCCGACTCCATGCTGCCGCGATTGATACTGGGGCGGCGGGGG
ATTGGGTTTTATCGCCGCGGATTACAGACCGGACCGGACGGCAGCGCGGATTACAGACCG
GACCGGACCGCACCAAACAGACGCACGGCTTTTGCGGCGCCGCCTTTCGTCGTGGACGGA
ACGATTGAACAAACCGAACAGAAAGGGGATTCGCACCGCCCACCGGGAGTTCCTATGTGA
CGCGTTCCTAACTATGGTTTGGGGTATTGGATCGAAGATTCGCACTATACATGCCCAAAC
GGGCCGGGATATCCGGGCCAGCCCAGAAGCACGCAGGTCAGGTACGCTATGGGCCAGGCC
CGGCAAGGGCTAATCGGACCGTGCAAGGCACCTGGACTGTCATCCTCAACACGTGGGCCA
GCACAACACGATTCGATTAGTTTTTTTTTTACATTTTTATCCTAAATAATATTTCATCAA
ATTTTATTCCACATAATACTCTATCAAAATTTATGCCACATAATACTCTATCAAATTTAC
ATTTTTTTTTTACCTTTTTCGCTTGTTTTGACATATTTTACGAAAAATATAAAAAGCTGC
TCAAACGGATCAGCGTGCCGAACGGACCGGCGTGCCTGAACGTGCCTCTTGTCGTGTCTG
GACTACCACCCTGAGCACGTGGGCCGACACGACACGACCCGATTAGTAGTTGTGCATGGG
CGGGTCGTGTCGTGCCAGCCCGTTTAAGGTCGGGTCGTGCCGTGCCGTTCGGGCCGGCCC
GTTTGGCCAGGTATGAATCGCAGAGCGCAAGAGAAGTTCATCTTAGATCTAGGTTTATTT
GTAATGTATATCAACTATAAGATGTATGCTTAGCCATCACAGCAAGTCTTAGAGAGATGA
ATGAATGACTCACCCAGACAGCAGCCCGTGTCGAATGGTAGAAGTAAATATCTAATGGTA
CATGACGAGCGGTACACGAGGAATGATCTCACCTGTTAACTGAATCTGAACAGTTAACTG
AATCTTGACACGTACAGCTTCAGACCTCACATTGCCCCCTTCTTGAAATTCGACGTGTCC
TCACGACGATGTGGCATTGTTCCTCCATGCTTGTGATCCATAAGATTCAAAACAATAGTN
NNNNNNNNNNNNNAAAACAATAATACTTCAAGCATATTAGCAAAGTAATCATGAA