morexGenes - Barley RNA-seq Database

Contig contig_1563455
Source Contig contig_1563455
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563455 (7450 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563455

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12515	9	1731 bp	MLOC_12515.3	Available	Available	LOC_Os08g02370.1, FRAME:+2, EVALUE:0.0, 13108.m00176 protein galactosyltransferase family protein, putative, expressed
CDS Structure of MLOC_12515

Contig Sequence (7450 bp)

>contig_1563455 7450 assembly3_WGSMorex_rbca.fasta
CCCTAGGACTATAACCCCATCAACACGCCTACAACAATGTTGCCCCTTTAATCACACACA
GTTTCTCAATTGGATCTTCCTTCACTTGCTCATGAGTTGCTTGATGCAGAATTTATTGAT
ACATTTGAATAAACTCATCAAATATGGTCGGATTTTGATTTAGAAGTTTGATAGGATCAC
CCATGTTGTCAAATTCAAGACCTACACAATATCCTCACCCTCATCTTTCACGGTTATATT
GTGCATGATTACACAACAATCATCACCTCCCACAAGTTCTTCAGATCCCATTGTTTACCA
GGTTCATGAAAAACTACAAAACGTGTCTCTGAGAACTCCAAACCCCCTCTCAACATCCTT
TTTAGGTGCTTCTTATATTTTGGAAGTGAAACTTTTTCTCACCAATTTGGTCAGAGACCG
TCTTAACAAAAATAGTCCACGAAGGATAGATACCGTCAACCAGATAGTAGTTTAGCATGG
TGAGTAGGGGCGGATGGTACCTGTGCGGCGAAAGGACGATAGGCGTGGAATGGCGGGGAA
GGACAAGCGGCATGGAGTCCTGGTGCAGCGATGGATGTGACATAGTCGTCATATTCCGGT
AAGGGTATGCTGGGGTAAGCTAGGGTGGTGGAGTGACAACGAGAAGAAAAAATGGGTGTA
GAGAAAAATGAGAGAGTGGAGGCGTGGGTTCGAGAGGTGTTTTGATGGGGTTTTGGGTGG
ACAAGAGAGGTGTTCTAGGTGGCTGGTTTTTGGACTCCTGCATCCCCCAAGTTTGTTTCG
AGTTTGCGAGAGAAAATTATGTCCAGACCGATAATATGATATGAAAGTGTTTCAATATTT
TTTGAGTTGTCTCAATATTAATAGTAAAGGAAAACCACAAATCGAAAGTACAAGGATTCC
ATTATCTTTATATATAGACGAGCAAAAGGGCCCGCTGCAACAGGAGATTTTTTTTCATAA
TCTTCAATGACCATGAATAAATTATGCTGCATCACCAAGATACACGATGCAACTTATCAT
TTGAACCTAGCTTTTGTTTAAGCGCCTTTTCAAATTCCTTTGAAAACTTTCCTAATAACC
CACGTCCGTTCTACTTAATTCTTTTTGTATTTACGAGAGCTTCATAAAAAATATCAACAT
TTGTAGACCCTTCTAGCTCCTACTCCTATTGAAACCAGTTGAATTATATTTAAGTGAGTT
TGAATTCAACACTTTCAAATTGGGTAAAACTTCTTTTGTTAGCCTGCTTATAAATCTCAG
GCTCCACGTAAACAATTTCAACATTTTATAAAACCCATGGCTATTTCTTTCCTTCCCTTT
TTCCTTCTCTCTATTTTTTATAAATAGGAAAAGCGAAAAAACCCAGGGAAAGAAGGAGAG
GGAGCCAACCGTGCTCAACAGCGCCGACCCATTTACACCTAGGCGCAAGAAGGCCCGAGC
GCCTCTTGTATCTTCTCGGCTCTATCTCGAGATTTCCTATTAGGGTGGGCTCCACATACT
GCTTTTTGTTGGATTCATGCGCCTCTCCTCTTTGATTGGCCGTATAGCATCCTCCTTCTT
TGTTTTGGCTTGTTGGTTCTTGTAATTTGGAACATATATAAGCTGCTAGGATTTAATGTA
AAGTGTTGGGGTGGGACTATTAATTTGAATTTGAAATTTTGGCACAAACTCTGTTTGTTG
CAGCCAGAAGGGAGGGGATGACATGTGGTGAGGTCGAACACTTTTAGGAGCCCCTAATAA
AAAGCTTTTAGCGGTCCGGGACTGTGCCATGGCTGCCAGCCGACGAGGGCCTCACCGGGG
CTGCTGGCTGACGAGCACCGGGGAGCTCAGGTGCTGGGATGGAGACGCACCTAAGGGGGG
CAGGGATGCTGGAGGTGAAGGAGAGTCCGGAAGAGCTGGAGGCGAAAGGGGGAGTAGGAC
GATCGAGGAGGCGCATGAGAGGGTGAGAGAACCGGAATCGGAGGGGAGAGCCGGACGGCC
TACGAGACCCCAGCCAAAGCTGTCCCTCGGCCCCTTCCACCTTGTGTGCCACCGGATAAG
ATGAGCAAAGGAGCGTGGGTGGTATTCATATAAAATGCAGTTTTTTTTTTACCAAAAACA
AAACATTTTTCTAGAGTGCCACTTAAAAGGGACTCGGATTGATTTCAAAGAAATAGAGAT
TTTTTTTTTGTAAAGATGCCAACGACGTACGTAGAGGAGCCATCCGTCCTTTATAAGTTC
TTTATTATTAAGTAGGTATAGATATGACATTTTTTACAAAATGACATTTACCCCAAAAAA
ATTATAAATGGACCGAAAGGAACTACACTTTCCGCAAGCTCGAGGAGCCAAAAATCACGG
AGGGGCATATGAGCCGAGTCCACGGAGCACTGAGCGCTACTGCATTGCAGGTGAGCAGAG
CAGGCCAAGGCAAAGCGCTTTCTCTCTCTCCCTTGCTCTCCCTCTCACACGGCTTTCCCT
CTCCTCCCGTTCGAACTAGGAATCCGAGGTGAGCACGGGCAAAGCGATGGCCGCGGCCAG
GCCGCACCACAGGGCGCCACCGGGCCGCGTGCCCACGAGGTGCGTCGCCGCGCTCTGCAC
CGCCTGCTTCCTCCTCGGCGTCTGCGTTGTTAACCGGTGCGCATTCAGCTCCCCACCCAC
CAAATCCGCCGTTTCTCCCGGATTTATTATCGCTATATCTACGCCTTACCCGCCCCCAAT
CTGTTCCTCTCGCCGCGAGCTGTTCCAATGCTCGTCGGTTTCGTGGGCGGAGGTGGTGAT
GTTTGCTCTACTTTTGCAGCTACTGGGCGGTTCCCGAGCCACCCGACTGCCCAAGCAAGG
TAATGCGCCGCTCCGAATCAATCCCCTCTCCCCCGTTGATGTTTATCTGGTCGCACATTG
CCAACCGACCCGGTTTTGCAGGCGAATTTTGGCCGCTCGAGGGCCGTGCTGAGCCAAGCA
CAAACCCGCGAAGTCGTCATGTAATGCCTGAACCTTAGGCAGCCATGAATCTCCCCTTCT
CGTTTGGATTCGCTTATTCTGCTTCTGTTTGGCAGCGCGTTGGACAGGACGATATCGGAC
ATCGAGATGCGCCTGGCTGCCGCTAGGGCCGCGCAGATGAGGAGCCAAGGCGCGTCGCCG
AGTGATTCAGCCGCTGACCATGGAAACATGCGACCTAGACTGCTTTTCGTCATGGGCATC
ATGACCACGTTCGACAATCGGAGGCGCAGAGACTCTCTCAGGAAGACGTGGGTGCCACAA
GGTAGATCCTGCAAGACATGGTACTTCAAATTGTTTGTGTTTCATTCATACCAGTTTTCT
ATCTAATACAATACAGTGCTCTGTCTCCAGGTGAGCGTTTGCGAAGGCTGGAGAAAGACA
AGGGCATTGCCATGCGTTTTGTTATTGGACGAAGGTATGTCTGAGTTTAAATAAATCTGG
GAAAGAAATAGTCAATGTTCCTGCTTGACACGCTACTGAGTTTTGGTGCTTACATCTCGT
AGTGCAAATCCTGGTCCTGACAGTGAAGTGGAGCGTGCCATGGATGCAGAAGATAAAGAA
TACAACGATATTCTTAGACTTGTATGCTGAGTCGACTACTTTCAACTACACTTTAGCTTT
TACTTTACCAATGACTAACAATATCGACGCCCTTTGCAGAATCACGTTGAAGGCCAGGAT
GGGCTTCCTTTGAAGATTCAGATGTTTCTTTCAACTGCTCTGTCCACGTGGGATGCTGAT
TTCTATGTCAAAGTTGACGATGATGTTCACGTCAACATTGGTATGCCTACACAGAACCCT
TTGTTGCTGGTAAACGTTTCACCGGTGTTCTCATGCACCGAGGTTTTCTCTCTTAACACA
GGTATTACCAGATCGATTTTGTCAAGGCATAGGTCAAAACCTCGGGTGTACATCGGTTGC
ATGAAATCCGGACCTGTGATTGCTAACAAGTAATACTCCAGAAACCCATATTGCCTCCAA
TTGATTAAAATACTAAACATATGGAGAGATGTGTCAGGCCTCAGACGAGAGCTTCCTTTT
TTGAATGGTAATGCAAACTCATGATATGAACTGTCGAGAGGTGTGGGGAAGGAAGTATCA
TCCGTCCGATAGTGGAAGTTAGTCATGCTACGTGCTAGCAAAGCAATTGTTTCATTTTTG
GGATTATTCATTCCTATTCTGATCGGATAATGAAGATGATGAGTTTTGAATTCTCTTATT
TACAATGACAGGTCCTACTAGAGATGCTCCCAATAGATGGTTTCATTTTACTGACATATC
TTCTAAAAGATGGAGTACTATAATGTGGTAATGCCTGCTTAATGTTCACAGTGAATCTAA
GTATTACGAACCAGATCATTGGAAGTTTGGGACTGCGGGTAACAACTATTTTAGGCACGC
AACACGGCAGCTGTATGCTATAACAAGGGACTTGGCGACCTACGTATCAGCAAACAAGTG
AGTCCTAAATTTCTGATGTGGATATGCAATGCCTGATAAAATGGATTACATTACTGCTCC
ATCTCATATCTGCTGGACATCATTTTCAGGCATATCTTGCACAAATATACAAATGAAGAT
GTATCATTTGGTTCTTGGTTGATTGGGTTGGATGTTGAGCATGTTGATGAGAGAAGTCTT
TGTTGTGGTATTCCTCCAGGTTGGCATCTCACTTCTTTACTGTTGATTTGCTTCTGCATA
GTGTCCTATTTTATCTAGATAATTATTGCATGCTCATTACGACATCGCTTAACCTAGAAG
TTATATGCTTTACAGTACTAAGTAGTTGAGCCAATCATTTTGAATTTTGTATTGAATTTT
GTACTGAGAAAATGATGATACAACTGTCTTACCAACTACAGTGTTTGTCTTACCAACTAC
AGTGTTTGTTAGCACATAGATTCAAGACTTGCCTTTACCACCTTTCTGTCCCCCAGCTCC
CCAGAAGCTGCTCTTGACACCAAACATGTCGGTACATCACATGAATATTTCATTCATCTG
AATGTTACCATCACTTAATGGTTACTACTGTACTTGATTACTCTTAGCCTGAATGGCCTC
AGAATAAGACGACACGAGTGCCTGTTGCTTGCAAATCTAGTTGGTGTTGACCTATCTTCT
CTCTCAGTTACTCTTTTGTCTGTTGCACTTCAGTAAGGCATGGACACAAACATGGCTCTA
TCTTTGTACAATGTGGTGAGTGACCATCAGTACAGTATTTTGTTTTTAGACCATAAGTAC
GTTGTTACTATCTCTCTAACTCTGGGGATATATTTACTTCACCAACCATTTGCCAGCCTT
GGTATGTGTTGTGATAATGTGATGCAAAGTCTAGCATTTGCTACCATCCAACATCAGTCT
ACCTGGCATTTGCTGCAACCTGCAATTGCAAAGCACTTCTGCTTGTTGTTCAGATTGTGG
AAGCATATGGCAGGTGACGCACATTTTCATGTGTCATCTTCTCTGATCATGCAGACTGCG
AATGGAAGGCGCAGGCTGGGAATCCATGTGGGGCATCCTTCGACTGGAACTGCTCCGGCA
TCTGCAACCCAGCAGAGAGAATGGAGGAGGTGCACCGGCGATGCTGGGAACATCGCGAGG
CTGCTCTGCCACAAGCGCAGGAGTCTTGACAGCCAAGGGGTGGCGGCATCCTTGTGCTGC
TCCATGTAAACTCATGTAAATTATTCAGTAGACGCAGACGCAGCAGCTGTCGTGCCGTGG
CCTGGGTTCTCAGAGCTACGATTTTTTGCCTTCTGACGCCGTGCATTTGCCTGAAAACGG
AGGGAAAATTTGAACAGAGCTACTGCATAGTGAAGGTTTTGCATCGTATGTGTAAGATAT
CCATATGTGAAAATGAATGCAGGAAAGCTCTGATTAAATGGTCACAATATCTCTGCAACG
GAACACCTTTTTCCTGAATTCTCAATGTGGCTGTCCTTTTCTTTTTATTTTGCAGAATGT
AAAACATTTATAGTTTGATTGTGGGTAATTGCAAAGTTGTACTGTACATTAATTTGCAAA
ATGCAAACATATTGTTCAGGAAGAGTACATGGTTTGTCAAAGGGCACATGTGGCATAACG
GATTTGGCTATGCTGCACATAGTTTTTGCTAATAGGTTCCTGATGCAGGTCTGGCTTGGA
CACAAGTATTTTTTTTCAAATAGGTTCCTGAATATCGCGAAGATAGAGTATGAAAAGAGT
GTAAGAGCAATTCTAGCAGAGTCAGCCATATTGGTGATCATCATATAGGATATGGAGGCA
TTTTATGCTACATGTAGGACCCATCTTCCATTGAGCCATCTGTTCTTTTTAGCATATTTA
CAACAATTTAGATCAAACAATGAGCATAGTTCGACAAATATTATTATAAAGCATTTATCT
GAATACAACAAATAATCCAAATGCAACAAATAATTTGATCACATAAATTGTTAAAGCGGA
AATGAATGCAATTCAAAGCAATTTAAGCACCCCTTCTCCTAGCTAGCCATGAGTGATGGT
AAATGAAATCCTCCTTCAACAACGATAGGAGGCCCGGTCTTTGATCTTCCGGTACGACTC
AAGAAATGCTTAACGTAGTTTGGGTTCCTGCAAGGCCTAACTGGTTGCCATTAGGTTCAC
AGTTAATAGGGCTTAACATATCCTTCTTATACTCTATGATCATCTTGTGCAAGATAACAC
AACATGTTGTGATATTTGCCAACATAACCTTGTTCCAGAAATGACCAGTCCCTCGGATAA
TTGCAAACCTTGATTGCATCACTCCAAATGTCCTCTTATTGTCTTTCCTATGAGCTTCTT
ACGCCTTGGCGAAATGCTTATGTTTCCTGCTCTCACGCTTAGAAACTGCCTTCATAAATT
TAGACCAGGATGGATAGATGCCATCGGCTAGATAGTAGCCTTGGTCATGTTGATGGCCAT
TCATCGTGGAGTTGCAAGGTGGAGAAGTACCATCACCTATCCTTTGAAACAGACGAGATC
TAGCCTTTGAAACGGACGAGATCTCTGCAAGACATTGATGTCATTGTGATCAAGGCAACC
TAAAGTAGCAATGACAACAATAGATCTTGGAAGGCAACGACTTCCATAACTATTGTCGGA
TCCTTGCAATGCCCGATGAATTAGTTTCTTTCAAGCTGCATGGCAATTTGTTCCACTTCC
AATGCATACAGTTCGCACTCCCTAGCATCCGAGACCGGCCTTTTGCTCTATGAATCGCTA
GAATCCTGACCGTGTCTTCGACATTGAGTGCTCGCCAAAACTTCTTTCCATAAACCTCCA
CCAGAGTTTGAGCCACCCGACACAAAGTAGTCTTGCATCAATCGGTTGTGGCCTCTATTT
TTTGTCTTGACACAAACTGTTTTTTTCATAAACGTAGCACGACCAACCTGCGATCGCAAG
CTTCCTCTTCTTTACACTAGATACTATCTGAAAGGATCGATATGGTTGACTAGACCGGGG
GGGGGGGGGG