Contig Data
morexGenes
Links



Map Locations of contig_1563417 (3863 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1563417

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12497 2 1931 bp MLOC_12497.2 Available Available LOC_Os02g46130.1, FRAME:-3, EVALUE:4e-40, 13102.m05175 protein tRNA synthetases class II domain containing protein, expressed





CDS Structure of MLOC_12497






Contig Sequence (3863 bp)

>contig_1563417 3863 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATTACGTATAGCCAAAGCTCTCTGTGGACTAAACGTGAAATATACTAGGTAA
AAGTGNNNNNNNAAGAGACAATGTATGTTGTCATAAATTATCAAAACCACCAAGGGAGCA
TATTGTGCTTTCATGACCCTCGAAGGAAGGGGAAGAGTAGTCTCCCTCCGCCACCGTGAA
GCACAGATCAGGTTGATTTTTTGGCGGGGGAAGACGATCGTCGTGGCCTACGCCCTCGCT
CATCGGGCAAGTCACCGGTTGTGTGACCCGGCGAAGCGATGGATGTAGCCTTCGTGGGAC
CCAAGCGGCGGCCTTTGCCCATGGTCTACTTTTCTTCATTGTCCGCGAAGTATCGGTTGC
ATCGTCGTGTCGTCGGGGCGTGACCGATGCGGAATTGACGACGACGCGGACATGGCTTCT
TTATACGCCTACCGGACATGTTGCCGCCATCCCTCGTGGTGGATTTGCTGGGAGAAGGCG
TTCGCCAGCCTAAAGGACGGTGGCACCGGCTCTGGAGAGCGAGTAAGCCTGCATGTATCT
AGTTGGCTCGCCAGGTAAACCAGGCCACTGGAGTGCCGAAGAGCTCCTTATTCTGCCTGT
CGAAGAGCCCATCTCACAAGACTTTGAAGCCGGACGCCATGATAGATGTGCTGCAAGGAG
GAGATGGAGAGTGGAGGTCCGGTATGGTTCTTGGCACGCGTCTGGCCACATTTAAATAGC
GGGCAGATATGAGGCACGAGTCGAAGTGGTGTTTAATGTCGGCCGGCACGAGAACGAACG
TGTGACTCTGTGGATGTTGGAGTAGGTTCCTCGGCACACGTGCTAATATAGTGAAGGTAG
ACGGGCAAATACACGTGTGGGTGTTGGAGTAGGTTCTTCGGCACACATGCTAATTTAATG
AAGGTAGACAGGCAAATACACGTCGTTTCGATGGGAAGAGAAGGCATGTGTAGCGGGGCG
GCGCTCTCGGTCGACGAGCCGCTTCAGTGCTGGCTTAAGTGAGCTGTCGCATCTGCTCCA
GGCCCGTATGAATACAACACTGACGGTCTAACGAAAAAATAAACTAGCAAGAAAGAGGGG
TCATCATGTTTGGTGGAGGTAGACGGGCTGACATATGTCGTTTCAATAGGTAGAGAAAGC
ATGCGTAGCAAGGCGACGCTCTAGGCTGGCAAATTGGCTGACAAATTGCTTCAATGCCGG
CTTAAGTGAGCGGTCGGGTCTGCTCCGAGTCAGCATGAATACATTGCGTGGTCCCGACAG
TTTGGGCTCGGCTTTGGAGGGGCCCTTAGACCGCTTTGAATGTATCTGCTCCTTTTTTGG
CGCGGAGAATTTCATATTAACAAGAGTTGTATACGATGTGTATCGAACCTCCAATGGGGA
GAAATGTCACTCAAAATTACCCCTCCTATCAAGGATTTTTCTCAATACTCTCGTGACGCC
ACACTTAGTTGCTGTCGTAAATAAACTGGATCCACGTGAATGGACACATTGCAGTTTGAC
TAGCATGCACCGCATGAGCTTAGCACGATAATTAAATTAACACTCCCTCTGTAAAAAACG
TAAGACGTTTTGGCAGTTTAAAATAGTACAATGATTAGTGCATTTTCTGCTTCGGACATC
CCGGCTGCATCCCTAGGTTTGACATGAGACAAATAACGAAAATGGCAGCACTATCACACA
AAATCACGGCTAGCAGACCAACTTGGAAAAGCAGATTAATTTTCATTTTGTTCGAGATTG
GTTATCAACATAAGCAGCTTTGTGAGTATTAACAGAAGCTCCAACACACACTGACGGTGC
TACACATTGGCCACGCCATTAACTCAAACGTAATGAACCACGCTGCACCCATCATCGCTG
CACCCATCATCGTAGGTTGTTTCAGTACTTGACTAGCAGATTGGTGAAGATGATGACAAC
CATGGTGCAAGCTGTCGACGCAGAAAGGAAACTTATGGCGCGAGCCTCTGTGGGTCGCGA
GGGAAAAGCGATGTCTTCCTGATGTTGTTGAGGGCGCAGAACAGCATAACCACTCTCTCC
AACCCGACCCCGAAACCGCCATGAGGAGGTGCACCGTAGCTGTGATTGTCGGCATAGGAG
GAATTGAGTACCAAAGTGAAGAAAGTAAATGTATTCACATTGAGATGGATTGTTGGAAAA
CATGTAGTAAAATACTGCAATATTAGAAAGTTGCCGCTATACAATTAGACAAGATCACAA
GAACAAACCTGAATGATTCAATGTACGATGCAATAGTACTCGCATCAATTCCACACTCGA
TTGCACGTTTCCTCAGAAGTTCAGGCGTATGTATTCTTTGCGCTCCAGAAATAATTTCCT
CACCTGTCATACAAATAAAATTGGTCAGAATCAGAATCAAAACTAACAAGCACTCGTGCT
AATATATTCTGAACATAGCAGACAGTTTAATATGCAAAATCGATAATATGTTCGTTTAAG
GTCTTCATTGTTTGTATAGATGGGAGAACTTTGCTTCAATATACCACTATGTCTTCTTTT
TTCTTGAATTGTTGATGGACCTAAGAAACAAGGCAACACAAAACCGAGGCTAGGACGATG
TTAGCTATCAGTGGAAGCAGTGGAGAACTTACTTCAATATAGTTTGTTCAAGTTTGTATG
TCCTAGACTACAAACTTGTGAGGAATCAGTGGAGAGTCCAACTCATGTTAACTACTCCCT
CCGCCCCATAATGTAAAATGTCTTTGCAAGCTGACAAAGCTTGCAATATATTCTGGGACG
GAGGGAGTATGAACCTTTGTACCTCGGACACATACATAAATAGAGGAGGTGAGCACGTAT
TGCTCAAGCAAGAATGATGGTTAGTCTTTTCTCACCCAAAGGTTCTCTCATCCAGGCTAT
GTCTATATAGATATTCTTTCAAAACCCTAATCTCCTATAAAGCATGCCATATGGACATCA
TCATATTGTAAGCAAGGTTACATCATCAAGTTGTATAAATTATTTACCCGAGGAAGAACT
GACCTAATATAGATATTTGCTGTGCCATTATACTTTCACATGCAACATCTCCCTATAACC
ACAACCTGTTGAAATAATCACTACATTCTACTGTTTTTATTTTGTTGACCCAGAGACTTC
TTTTTGTATCCGACTGGAAAACTCATCCACAATAGAACATCATTCCTACCATTCTATGGG
TCTAGATATCAAAGGATAAGTATAAGAAACAGTGTCATGAAGAATAGTGGCCCTGCTCTA
CCCATCTAGTCCAATAGTTCTGCCATATGTCTGCATGATACCCCCTCCTGTTTCCAAAAT
ATGCAAAATTATAGCTTCAACTTCCATTCCAAATGTGCATCTGATTCCACGATTTTGATA
TAACTTTCAACCATTTTTCTCTTAAATTTGTATCATGTTTCGTTAATTCTCATTTATCTG
AATGTTGGTATGGACTAGAGTGACACACATCATCCCAGCAAGAAAAAGTAACCAAATGAA
TGTGGGTAATATGGTCATTCCTAGATTTGTATTGGGTTCTGTGCAAGATCCCAGAAAACA
CATGTTCAGGAACTGAGGTACCAGTATACTAGTAACTTTTATGACCCAATTAGGAAAAAT
GATGTCGCAAGAAACTCAACAGTTCTTGGCCTCGATCTCCAATTCTCCAAGGACGGTGGC
CGCTCCGTCAGCGAGGTCGCGCCAAGGCTATACGCTTGCATCCCCAAGCGACGGCGCAAG
CAGCGCCCTATTGCAGAAGGCCTCCTCAACCACACCTGGGCTAGAGACATCCACGGCCAC
CTAGGCATCCATGAAATAGGCCAATACTTGCTGCTGTGGCGCGAAACCGAAGGCTTTGTT
CTCACCGAGGGACCGGACCAGCT