Contig Data
morexGenes
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Map Locations of contig_1563389 (6975 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_1563389

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12482 6 2812 bp MLOC_12482.3 Available Available LOC_Os05g33310.1, FRAME:-1, EVALUE:0.0, 13105.m03442 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MLOC_12481 1 1023 bp MLOC_12481.1 Not available Available None
MLOC_12483 1 161 bp MLOC_12483.1 Available Available None





CDS Structure of MLOC_12482






CDS Structure of MLOC_12481






CDS Structure of MLOC_12483






Contig Sequence (6975 bp)

>contig_1563389 6975 assembly3_WGSMorex_rbca.fasta
ACTAGTATACCATTTGTAACATGTGGAACTTTCTAGTGACGTGTCTACTCACGAGCTTGC
TCCAACTGTTGTTGTGACACCTACACGCACAACAACAATCACACTGCCTCCTAGCCTTCA
TAACAGCCCTGGGCCTATCACTAAGTAGGAATCTCTAGTAGCAGCCTTCAGCATTGTTTC
ATTGACATTCATAGAAAAAGGCTGATTAAATTCAGTTAGCAGCAGGTACTTCAGAAGATT
GTATTGCATAATTGCGCTGTCTGATCAAGTCACTAAGCATTAGACTGTGGCTTTGATTTT
TCGTCCTTTTCCCACTTGTTCCAAGTAGAGATGACTCTGAAATTTCAGCCATTCCTAAAG
TACATCATAGGAAGCGATTAAGACTTCAATAACTTGGAGCTCAAAAGGGGCCTCCAGCTA
TAAGGCTAGAACTGGACTGATATCGTGCGGATTTAGTGATTTTCCAAGTTCATTCATATG
AATCTGCACAACCATCAGATTTTTTCCTTTCTAGAAAGCACTTGCCTTATATCCTCTTGG
TCTTTGGAAGTAACATTAGACTCATGAACTCCAGTCAATATATGGTACAAGTCACAAATT
GCGCTTGTTATTCGCTTAGAGAACCCCTATTTCGTTTAATTTGTTGGTTCACTGGGAACT
GTGCTGATGACTCTGCATTTCTTATGACTCAGGGTGAAGTGAGAAGAGGTACGACGCCAA
TTTTGCCATGTATTACTGGCTGACAACTGTTGCATTTCTGGTTACGTCCATGCCTTATTA
CAATGTATTACTTCCTCCGTTCTTAAATGTAAGTTTTTTTAGAGGTTTTACTAGCGGACT
ACATACGATTGAATATAGGCATACTTTAGAGCGTAGATTCACTCATTTTGCTCCGTATGT
AGTCTTTAGTAAATTTCTAAAAAAACTTATGCATGCTTCGGAGTAGACGGTTTCCCGAAG
AATTAGGTGATGTTTTGAAGTACCGTGCTGTTTCTCAAGGATAGTGTCACGTTATGCTGA
GTTGTGCCTGTTTTGGCAAACCATGGGATTTACACTTTGACTCACGCCGAGTAATATATA
CCGAACTGGGCTATAACATTCTCATCTCCTCTTTTTTTAAGATTGTGAATCGTTTCATTG
CATACTAGCTTAAATCTTCCCCTCTATCATCTTTGGTCTGTAAATCGTTTCATCTCCTCT
TTTTCCAACATCTTTGGTCTGAGGGCTACGATCCAAAAATAGTCTATCAGAACAAACTAC
CTATCAACATTCTTGCATTGCACATTTCCAAGAAACCAGTCTGTTTTTGATGGTTATAAA
GCTTAAAACCTGGTCGTTTGGTATCAACATATGCCAGGTGCTTTTCGGACTGTTTACTTC
TTGGACCATGCTCTTTCTAAAGGATAAAATCAGTAGTGTCTAAGACTGTAAGGATAGTTT
TGCCTGTCGTTCAAAAGAGGGAAGAACAACACAAGTGATCAACAGAGGAAACTTAATGCA
TATTCTTTCTACCTGTATATAGACCTGCAAACCCAAACTCAGCAGAACAGGAACGGCAAC
ATGACATCTATGTATGCATCCAGTTCTTTCTCCGAACCAGATGAGGAGATAGACAAAAAA
AAAAGTTTTGATTGATTCATTCTGACCTCACCTATCCCTACTCATCATCATCATATTTCT
ACGTACCGCATCGGCCCGTGCTACCCACAAGGCCACAAACTCAACTAGATTACAGGCAGA
CCAGACCAAACCCCACAAGAAGCAAAAAAGAAAAACACCAGCACCAACGAGAGTCACCAA
GCAGAATACACAGGGCAGCGTGCCCGCCCATGCGTTTTCCGAACTTTTTGCCTCGGAAGA
AGAAGAAAAACTGCTCCACGAACCAACCGGAGATATACGACGGCTTGTCCATCAGATCCA
ACGGCCACGCCGGGGTGAGGTGCGGTCCGGCGCTTCAGCCCTGAGACTCTATGGGCGACA
TCATCGCTGAGAACCGGCGCTTCTGAATGCGCGGGGGGAGGTGCTTGTTGTACCGCTTGG
GACCCACCGTCCATGGAAGAAACACACCGGTGCCGCCGCGCCCCATCCTCTTGTTAATGT
TGCTCGAGGGCGCCATCATCATGGTCCTCGCCGGCGCGGCGACCATCATCACCGGCGCTC
GGACGGCCATGCCCCACGCAGGGGCCATCATAGCCTGTGGAGCCGGACAGTAGCCGATGA
TAGCGCCATTGCTGCCATGGGGCGACTTCTGCATGCCGGCCGTTGCCATGGTCGGGGGAG
GCTGCCAGAGCGTCATGGCCTTTGTGGGTGATGGGAGCGGGCTGAGGTCCACCGGAGTCG
ATGGCCTCACCCTCACGAACGTGATGCTCACGCGCCGGTTGGATGACGGGCACACGACAT
GGCGTGCCATGTCCGCGCTGTTCCCGCGCATCACCAGAAGTGATCTGCAAATACGATCCT
TAAAAGTAAGATAACATTTCTAGTACTGCAATGCTTTCTTTAGCAAGCCGAAATAGTAAA
ATAAAAAATCACCCCCCAGAGTTTTTTGAAAAGTTTTAACACGAGCAAGTTTCGTGCAAA
TCTCCTTAAATTTCATTTGAATTTGAAGATTTTCCAGGAGGTGAATTTTTTTTGGTATCA
TTAAAGAAAGCCTTAAGCGTACATACCCTTGCTTCAGTGAGAGTGTGAGGGGTCCCTTGT
AGTTGCCGTTGCTGTCAGTGACAAGTGACCTTCCAAATGCCATTGAGGTCTCAGAGAGCA
GGAGAGTGGAAATGGGGTTGTCCAGGTGGGGAGGCTTGAAGTAGGGCTGCGAGTGTTCGT
CCTGTGAAACAATTTCACAAGTTGTCAGATACCAACACCTTATCAAGTTTCAAACATTTG
AGCTCTCAATCTATGTTCATGCCTTGAAGAAAGGCACTGTGTTATATAGTGTAGTAGCAT
TGGTATTTTACTTTTACTACGTGCTTTATAAGTATTATAGTTTATATCTACTTTATATAG
TTCATATCAAGTTCAAGTACTCCTGTGAACCATAGAGTACTTAATATGGATACTTGACCC
TACAAGAACCCACCAACTGTAATGTGCAAATTTACTTTGCTATTTGTATACTCAAGTGGC
TGTTTTTTAAGGAGAAAAAAAGTCACTACCAGTTCTGGTTCAGATTTGACCCACATATCT
CATGACAGTACAAGAAGCAAAATCTCATTCGGTTTCATTTATTTTTGTTATATGATTATT
CTGTAATTAAACACCAACCGGCAAACAGCACAACACCACCTACCTCATCGAAGAAATTGA
TGATGACACTGTTTGGTTTCCTGCTTTCTGGTATTAAGCGCCAAAGAACAAGGTGGTCGA
TGACAGCCTGCAGGACAACTGGGATTGGTTCTATATGACCTGCACACAAGGCCAAGAGAA
GAAGACAGGTGTTAGTTATGATATCATCACTCACTAGGGCATCTCTTTGTCTGGACTCTC
GAGATGCGATATCAATGCAAAAGATCCTACTCCCAAAAGAATATTCTTGCAGTAAGCAGG
TTGAAGCAAACTTAGTATGAGCTGACAGTTTTCCTGGACATACAATTGGTTTCCTCTGTG
GTATGTTGAAATAATGGGACACCGAGCTGAATGATCTCCCTCTTGTTCCCTTTGATCTGC
TTGTTGAAGAATATGAAGGTTTCACCTGGAATTGAAACTAGAGAATTAACATCAAAATGA
TCAAGGAAATACCACATGGGCAAACATGCCAACAGTGTCACATTTGGAAGACAAAGTAGC
CGAGCACACTTTACAAAGCTAACAAGAAAACTCTGTCAAGTTAAGGCAGCTTACTTACAT
CTGAAGATTTTGGCCAAAACCCTACAGGACTATACGGACGTTGTGGGGTCTATGTCAAAC
CTTCATTGAATCATACTTAGAAACAAGCAAGGCTAGCAGGTTGAGCTTATATACTTGGAT
CAAATTTTTGTGGTGCACAACTTTGGAGTTGATGTTAGAATTCCTATCCAATAAAGAGAA
GTGATTTAACATGTTACCATAATTAATGTATACATTCATGTCTAACTTTTCTTCTGTTAT
TGAGAGGCAATGTTAAGTTCGCTAGGTTAAGAAAACTATACATCCAAATCAGAAGGTATT
ATAGTCAGTGCGTCACTAGATTGATGACTGTACCTTCTCACATGCGAGTTTTACATTTCC
TAAATTAGGATGACCGGCAGCTTTCTATGCAACAGCAAGTACCCAATTATACTAATTTAG
CCTAAAAATGGAGAGAGTTGCTAGGACCTAGAACCTGTAGATACTGAGTCAGTTAGCACA
AAAGTGCATCAGACAAAACCATCACCGCCGTTAGAAAAAGTAGTAGTGCCCAAACTAGGA
CCACACTTGGGTGCCCTAGGGATATTTGGTATCTTCAAAGCATCAATTGGATAGTATCAG
AGGTTAGTTGTGGTCTTGTGGGCACAACGGAAGTATCCAGAAAGGAGTGGGCACAACGGA
AGTAAGAGAAAGCAGGAAAATAAATTGCACCACACAAAACAATGCCCAAATGCTCCAGCT
TTTGAACATTTGAAGAAGGGAAAAGCTTCAAGGCAACAAAACACAACTTACCTGAAAGTT
CCCCGTTCCTACCAGCCTGGCGAATTTCATTGATGAAATCAGCAACCTTCATGAGCTCCA
TTGTTGTGAACACGTCTTCATATATCTTCAGGCCTTTCACAACGTTAACCTGATAACACA
AGGTCATAAACATCTTGTTAGAAAAGGGCATCTTTACAAGAACTATATGATAAACTGGTA
GATGAATGGATGTGCTACTACTTCCTACAGCATCTCTAGTTCTTCAATACAGAAAGTTTG
CCGAGTGGTGTTAAGATGGAACTCGCCATGTGCCCCTTCACGGACTCCTTCGCCATGAAA
CCTTTCTGGATCTTGATCCTCTCGGGGCGGGCCATGCACTCGTCGTGGTCAGAGCAGATG
GGATAGCTCTCTGGCAGGCTGTGCTCGCCTTGAGATCCTTGGTCAGTGTTATCTGCTGAG
TAACATAGATCTCAGAGGGGTTCCAAGCATTGTATAACTGCGCATTTCAATTAGCGATTG
CAAAACGTATACAGTGTTTTGAAGTGTGCTACTGTCTAGTTTCAGAAAAAAAAAAGGATC
CACCAAGGAAGGCGTGAGAAAATGCAGCAGATAAATACTGAAGAAATGTGTCACGAGTGA
AATTCTGCTCTGTTTGGTTCATCCTGTGGGCTCCTAAAAGCAGGTGGTTGCATGAAGGTC
TTCATGCAATGAGAAACGTAGCTAGCATGCTAGATCATCACCGACAGTTTCGACAGAGAT
TCTACAAAAAGTTGAAGAAAACTTTATATAAAATACGAAGGTATTTAATCCCAGCTTTTC
TCGCATGGCGTAATCTGATCTTCACCTACCTACCTAAGGTTCGTTAGTGGGTACAGTCAC
GCAGCAACAAAGGTCAGGTCCAGCTGATCACCCCATTTGATGTTTTGAACTTACACTAGG
CTAGATCGCTCTACAGCCTCGGGCTCTGTCGTGCAGCACCGATCCGATAGCATGGTGCAG
CTTCGTTCCATCTTTCAAGATCACCATCATAACACAGGAGGAAATTGAAATGACCTTGTG
TGGAGGACTACCATGGTGTCATTTTCTACGGGGTACGGCATGCGGAGAAAAGGGAGGCTG
CCTTTGGTGGACGAAGAAAAGTGGGTATAAACGGGAGATTCCCTCAAGTTGAATGTACAT
GGACATTAGCACATCGGCATAAGTGTGGGGGCGAGGCGAGGCGATCAGGGACCAGACCAA
TACGGTGTTCAATTATTGCGGGAGAAGAAAAGTGGTATTGGGATGGTGATATTACAGGAA
CAGCAGCCTCTATGTGCTGCAGAACATCTCTCTGCTTTCGCAGCTGTGTATATATCCTTC
CTTTTCATAAAAAAAAAAGGAAAGATGAGAATTTTCATCTCCGCCCTTTTAAAAGGTTGT
GGCAGCCTCTCACTTGTCAATTTGGAAGAGATCGCGGGAAATCTTTAAGAACCGAGCCTA
CTAGCTTCGAAGGTTGGTGGCTAGCAGCAAACCGACAAGGCTGCTGCTTCAGTGATGATC
ACATCAGCTCAGCACATCATCGGGCCACATGCATATGCGACACTGGCAACGCTGGTGGGA
ACTTAGCATAACCTTAGCTATCAATTCAAAATCACGTAAGATAATCATATGGTATAATCA
CGTGCTTAACTCGCCCCTGCATGGCTACACCACCTACCCACTTCCTGAACACAACGGCAG
GCGGCTATGCGAGAGCAGCCGCGGCCCACAAGTGTACCGGTCTTTCGAGAAGGAACGTAG
CAAGTGGGACCAACGGAGTACCCGGTTGATTGGCCCGGACCCAGCAGCCAGTGGCCGAGG
GCGGACCACGTGTACAGCTCAGGCTCAGAGTTGGGAGGTGCGGCCTGGCGCCAGATCCGG
TCTCGGCCGGAGATTTTGGGCTTCTCGAATCCGATCTGGGTCCAGTCGAGTGGCTCTTCG
ACACGTGCAGGCCGTGGTGGAAAGAGCAGGAGGCGTGCAGGGATTTAATTTTCCACGGTG
GCGGTCATGTGGGTCCATTAACTCGCTCGCGCCTTCCGTTTGATTGCGATCAGACGGGTC
GTCGCCTCTGGCGCCAGGCTCTGAATTCTGACTGCGTGCCACGCCTCCGGCTGCAGAGCA
TGTCCCCGAAAGTCCTGTAGGAGACGCTGGGCAAAATACTCGTGCTCCTTCACCATTGAA
TTATACTCCCTCCGTTCCATAATANAAGTCTTTTTAAAGATTTCACTAAGGGACTATATG
CGGATGTATATAGACATACTTTAGAGTGTACATTCACTCATTTTGCTCTGTATATAGTCG
TTTAGTGAAATCGCTTAAAAGACTTANNNTTAGGAACGGAGGGAGTACATGTGTGCCCCC
CCCCCCCCCCCACCC