morexGenes - Barley RNA-seq Database

Contig contig_1563385
Source Contig contig_1563385
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563385 (8311 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563385

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12480	1	775 bp	MLOC_12480.1	Available	Available	None
MLOC_12479	1	2243 bp	MLOC_12479.1	Available	Available	LOC_Os06g08120.1, FRAME:+1, EVALUE:5e-177, 13106.m00849 protein plant protein of unknown function domain containing protein, expressed
CDS Structure of MLOC_12480

CDS Structure of MLOC_12479

Contig Sequence (8311 bp)

>contig_1563385 8311 assembly3_WGSMorex_rbca.fasta
CCCCCGTCCGGAAATACTTGTCCTAGAAATGTATAAAGGGATGTACATTTGTAGGACAGG
TATTTCCGGACGGAGGGAATAGTAATATAGACTAGTAACATATGCATCGGAGGGGAACTT
TTGGAACCTGGATTTATATGCATCCCATATGCAGAAACAAATCCAACATAAACTCAAAAA
ATTCCAAAAATATATTTGAAATAAACTTGACCTCTCATTGTAATTGTGAAAAAAATCACA
AAAAGAAAATTACACTTTGACTTTTTTTAGAAAAAAGACAAATTTTCGGTCAAAAAAATG
TGAATAGTGACCTATAATAGCACATAAATATTATCTTTCTTGTCCGGAAATCAATGTTGC
ATTTTTCTTTGTGAAAATTTATAAAATAAATTCAAGTTTAATCTAAAAATACTTCACAAC
TATTTTGAGTTTTGTAATAATTACTAAAAAAACTCATATTACTTGCATGTACGTAAAACA
AGAAACCAAAGAGTATTCCCTTAAATCAACCTAGCTTTATATGCCCCAGGTCGAGTAATG
CTACACTTACAAAGGATTACGTAAAGATTTTACGTACAAACTGATGTGTAAGATTATAAT
TGGTAATTAAGAGATGAGGGGCCCCATCCTCATTGAAAATCAAGGGAAAAGAAGAGTTAG
TTTGAAAGGTTAAATAAACCTTTGTAAGTTTTTGTATGTCTAGCCTTGTGTATCAAGCAT
GACTTGACTTGACGTATCCATATAAGACGCCGGTGGCCTGTTGCTGGCTGGTGTGGTGGC
ACTGTAGCGAGGCGACGTCACTACGGGCTGCCGGCATGGATGGGAGAGGAAGTGAGAGAA
TCATAAATATGTGGTGGGCATGCATGCATAGGGTTTATGCCGTACCGTACGCATAGGCAG
TCCAGCAACGCTTTCTCTATATATGTAGCGCCTCTCTCTACCGTTCATCAGAACATAGAT
TAGCAAGCAACAGCCCACGGTAGAGTAGAGATAGAGATAGAGATAGAGATAGAGATAGAG
ATAGAGGCAGAGGTAGAGCTTGCAATGGCGGCCGCCGCCTCCGATCAACAACAGCAGCCG
CCCCCCCGCAGCAACCGTTACGGCTTTGAGGAGTCCGGGTGGGTGGAGAATATCCGGCAG
TCGCTCCGGAGGAGCAAGGAGGACGGCGACGGCATCCCTGTGTCTGTGTTCGACGTGCCC
AAACAGCTGCAGGTGCACAAGCCGGAGGCCTACGCCCCCCAGTTCATCGCCCTCGGCCCC
TACCACCACTGGCGCCCCGAGCTGTACGAGATGGAGGGCTACAAGATCGACGCCGCCCGC
CGCGCGCTCACCACCCTCGGGCGCGGCGGCCTCGACGACCTGGTCTCTAAGCTGGCGCTC
CACGAGTCCAAGGTCCGCGCCCACTACCACCGCTACCTCGACCTCGGCGGCGAGACGCTG
TCGCTCATGATGCTCGTCGACGGCGCGTTCCTGCTCGAGTTCCTCGCGATCCACCACGCC
ACACCCGCATGCGTGGCTGAGCGACAGACACACAGGGTGCTCCCGCTCCCGGTGAGCAGT
AGGATGGCGCACCTCGCCGACGTGGGCGGGACCGGGAGGAAGTCCTCCGCGCACGGCCTC
ATCCTCCGTGACTTGCTCATGCTGGAGAACCAGATCCCGCTCTTGGTCCTCCGAGAGATC
CTCGACGCGCAGCAGTCCGTCCACGAGTCGGAGTCCACCACGCGGCTCAATGCCATGGTC
ACTGGCCTCATCAAGGAGGTCTGCCCCTTGAAGATGAAGGGCAACTTCCCGTTCCCGGAC
AAGGAGATCGACGTTGCCAACCACGCGCACCTGCTGGAGTTGCTTTACCACCTGCTCGTG
CCCAAACCCTCAGCTAAAGCCGGCCACTTGGAGGTCGAGGTCGAGGAGCAGCCACCGGAC
GGCGACGGCCACGTCGATGAGGACATCGAGGAGCAGCGACCGGACGGCGGCGGCCAGGAG
AAGGAGAGCAAGTACGTGATGCAGCTGTTGGCCGTTATGTGGCGCATCGCGTCGAGGCTC
AAGAGCGGCCGCCTGCGTCACGTGTTGAAGCCGATGGTGTTTGCGGCCAAGGCGCCATGG
AAGATGCTCACCGGCATCTCGGCGTCCAAGGTGAACATGCTCATGCCCGCCGACGGCGAC
GGGAGCGAGGCGTCCGAGATCACCATCCCTTCGGTATCCGAGCTGGTTAGCAGCGGCATT
CAGTTGGCGCCGACCAACGGCATGCTGTCCACCATCGCCTTCAACGGCAAGACAAGGACG
CTCCATCTACCGGCGGTGACCCTGGACTGCAACACGGAGGTGGTGCTCCGGAACCTGGTG
GCCTACGAGTCATCCGCCGCGTCGGGGCCGCTGGCCCTCACCCGGTACACGGAGCTGATG
AACGGCATCGTGGACACGGGCGAGGACGTGGCGCTGCTCCGCAAGCGCGGCGTGTTGCTC
AACCGCATGAAGAGCGACGAGGAGGCGGCCAGGATGTGGAACGGCATGAGCCGGTCGGTG
CACCACTCCAGGGTGCCGGAGTTGGACGCGGTGATCGAGGACGTGAACCGATACTACGAC
GGGCGGTGGCGCGTCAAGGCCAAGCGGTGCATGCGCAAGTATGTGCTCAGCTCCTAGAAG
ATGCTCACCTTCCTCGCCACCCTCAGCATGCTGCTGCTCACCACCTTGCAGGCCTTCTGC
TCCGTCTACGCATGCTCCCGCTGGGTCACTGACACCGTTGCCACCGTCACGCCGGCAGAC
TAGCTAAGCTAGATCGCCCGCCGCAACTCTTCTGTATCAGTATCGTCGTCATGCATGCAT
GTACCCACCCGTAGTATCCATATCGATCGTGCAACTGCTGTGCCTTGTCGTTCTAGTGCT
TATTTCAGTTTAATTTGTAGAAATAATTCATCAGCGTCATGTATAATTAATTATCTTCTT
TTTTCCCATTTGGTTCTTATTTGGATTTGGTCGACATATATTTTCCCATGTATAATTATT
AAGATCAGTGTGTTGCTCTTGATTGGAGTTAATTGCATAAAACCATCACATTTCAGGCTT
TGTTTGCGAAAAACTATCGAGTGCCTAATTAGTTACATAAATCACCGCGTTTCTGGTAAT
CTTTTTTGCAAAACACACTGACCGAAGTGTTTGGCCCCTTTGATCACTTTCTCACAAGTA
GTTTCGGGGGTGGGGGTGATGGGAGCATGTTCCTCGTCGTCTCCGCGTGGATGGTCGGCG
GTGGGCTTCCTGCGGCAGCGACGGGAGCCGGTACCTCCTCGTCTCCGCGTCCGGCCGACC
AACGGTGGGCTTCTGGCAGCGGATGCAGGAGCCGATGGGGGCGACGGCGGGAGCTGGTGG
GGTGGCGCGGCACAGTCGGTGTGGGTGGGTGGGGTTGATTGCTTTCTATTATTGATTAGG
AGTGTGTGTGTAATTTTGTTTGCCTAATCAGCTCTTACCGTATGTGTCTACTTGTTAGAA
AGTGATCAAACGGGGCAAACACTCCGATCGATGTGTTTTGCAACAAGATTACCAGAAACA
CAGTGTTTTTGGCATGGAATTAGGGACTAGGTTGTTTTTCGCATACGCGGCCTGAAATGT
GGTGGTTTTATGCATTAGCTCAATGTTGATTTGGTTCTTATTTGGATTTGGTCGACATAT
CATGTAGAGGATGGATGAGAGTGCTAGTGTAAACGAAGGCACCCCTGTCCGTCGGTTCGC
TTGACAAGATGGCAGACCTGCCGAACAACCGCCACCACCTCTTCCATATGATCATCGCTG
GGATCACATAAAATCTTTCTAGAATTGGAGAGTCCACATTCAATTGAGGTCTTCAATTGA
CATTGTTACGCCCAGTTTTAACCTGATCAATAATTTCTCAAAGCTCTCTCATTTAATTAT
TTTATTTGTACTTGTATAACACTATACTCGTTAGTTTTAAAGAGTCAAATTCAATTGAGG
TCTGTAAGGCGTCAATTAAAACTAGGTCATCCGATTTTGACGGGGTCAAAAATTTCTCAA
AACTCTTTCCTTCAATTCTTTAGACAAATGCATTATGATTCCTAACGGGTTTGGTTTACG
ATTTTGATCAAACTAACAGTTTTTTCAAATCAATCAACAACAGTCGGCCTATAAAAACAT
ATCAATGACTTCCATGGAGCCCTCAACGTAAATTGTTTCCCACATATATAAGGTTGGTTG
GCATATAATATAGAATCACACCACAAAATGCCCATCAAATTATCGAATTACAAATATAAA
TAAAATACACTTTGTTATCTCCCCCAGACACATCAAACAAAACAATCCGTTAGTTTCAAA
ATATAAGGGGTATTAGGTTTTTGGAAAGAAAAATTCTTCAACTTTGACCAAGGTGAGAGT
AAAAATATCGACATCCATAATATTAAATAAAAGATATGATAATTCATTTAACGATGAATC
TAATCACAACTATTTGATATTACCAATATTGATATATTTATCTACAAATTTAATCAAACT
TCAAAAAAATGATTTTTAAAAATAATAATACATATTGTATTTTAAAACAGATTGATTAGG
TTTTTCTAATCTAACGGCGCAGCAAAGCGTGCCCATCCTTCTATTGTTCATTATGCTAGA
AGAAAGCTGAGAAGAGCAGATTGGCACGACAAACATCGTGAATATACTCCGTACCAATGT
AAATAACAACGGAAATGGGAATGGCAATAACAATAAAAAGGAACGTCAATAACAGCGGAA
ATGGGAATGGCAATAACAATAAAAAGGGAAAAGGGAATGTCGATGCATCCAGATCTAAAC
TGACAGAGTTTCACAGGACCAACACGCTAACTTCTCTCAAGCAATCACACCTCTGGAGGC
CGATGGCTGGCTAACGACCATTGAATAGAAACTGAAAATCACTCGTTGTGATGAGATAGA
CAAGGTTCCTTTTTCCACTCATTATCAGGAGGGATCTATAGGAGTTTGGTGAGATAATCT
CAAAGAGATGCTGAACGGAGGAGAAAACCCCAACTGGGCTGAATTCAAAGAACAGTTCAA
AAAAGCTCATATTCCAAAAGTGATCATCAAGCTGAAACAGAGGGAATTTCTATCCCTAGG
ACATGCACCCTCACAGTGGCTAAATATCTGAACAAATTCAACCAATTGATCAGGTACGCC
AGCCATGATTGTGACGGCCTCATTCATGACCGTGCACTAATCATAAACACAGCATGCACG
ATCATCAAAGTGACTCACGGTAGTACCACAACACAACTCTACGACATAAATTAAACATAA
AACAATATATTACAAATAGGGGTCGCAAGATCCGATATTAAATAAAAGGTTAGGTCTGGC
TATAGACAAGTTAAACAATTTTGCCTTAAAAATGATGAGTAAAGCAAGGACGCTAGATCA
AAAATGCGCAGGCATCTTGCCTAGGACCTCCGAACTACTCGGCGACGTCAAACTCCATAA
TACAAGAAATCAATTGATACATGACAGTATTCATCCATCACAGATCAGTGCATGATCATC
ATGTCAGTTCATCCATGAAGGATTTGACTAGTACTCCCTCCATTCCACAATGTAGCACAT
GTAGATTTTTCTACAAGCCAAACTTTGCCAATTTTGATCAAGTTTATAGATATGTCTACA
TCTAAACTATCAAACATATACATTATGTAAGACTAACTCATGATTTATTCATTGATGTGC
ATTTCATATACTAGATGTACGTATTTTTCTCTATAAATACGATCGAATTTCCTAATGTTT
GACTTCTAGAAATATCAATTGTTAGCTTGCTGTTTTCATTGTTTCAGATTTCTAAAACAT
ATATCTACTATGCGTACTACATTTGGATCGTCATCTCTTCGTCGAACTACTACAACTATA
CAATTTACCATTGTATTATCCACTCCTATCTATTTAAGCATGGCATGAAAAACTATAATC
CCTCATTGTCATCATAAACATGTTCACTCATAATATACTGAATGAAGATCGAACGAGCCA
AACATACTTTCAAAAACGGAGAACAAGAAACGTTCATACTCGTTTCCTTTGCCACAATCA
CTTTATCAAATATCATCGTTATTGCCTTTCACTTGCATGACTGAATGATGTGATAATAAT
AATAGTGCATGTCTGTCGTGGACTAAGCTGGAATCTGCAAGGTATTGTTGCAAAAAGGAG
AAGACATGGTAATATTGTCTCTTTTCGATCGACAATAAAGCATACGAGAGCTACTCAACA
TTTTCATCATGGTCTTCTCCTTTCATCAGTGCAAAGGAAAGAAAAAAAGTTCAGAGAAAC
ACACTGAAATATTTTTGGAGTGTTTGCTATTTCTCGAAGAAAGCAAAAAAGAAAGGAAAA
AACAACAACAAGAAAAAATATTTAAACGGGACAGCTCCCAACAAGTGAAGGAAATATTTT
AGGTTTATCATTTAATACTACAAGTACTTAAATGAAAAAGAAAAATAAAAAAGAAGCGAG
AAATATTTTTGAATTTTCTAAGGTTTTTCAAACAAACCAGAAGAAAGAAAAAAAGAACTA
ACATGGATTTACAATGAAAGAGGATGAACACCGGTAATTTATATGAAGTGTGTGAACATG
AATGTAATATATTCATCGGTGAGAAGTATGTACTCTTCCAAGCTTAGGCATTTGCCTAGC
TTGGTTATCACCATTGATAATAGCCGTCAGGTCCAGGAAAATATTGCTGCTGAGGCACCT
AAGCATCCCACGCCTGGGCTTTGGCCTCCATGGCAGACAACTCACTATGATAAGCAATTA
TGTCTGTTGGCATGACGGTATACCCGTACGTGGCATGATGATCAAATAAAGAAGGTGAAG
TCAGGGTAATAATATCACGAGTTTTCATGCTGAATACTAAAATGTAACGAAGGTTCTGCG
GTGGCTGAGGTTTTCACCAATGAACCGGTGCTCTATCGTAGACTGGTGATCAAGATAAAC
CTTAGGCAATAAATAGTCAGTGGGGCCTATGACGACATTAAAACGCTTTACTAAGCGTGT
GGCATAAATGTCGCCATGAATTTTTCATCTAGTTCGATTAAGATGTAAGCAGCATGCAAC
AATAGCTCCTAAGTGAAAAGTATTTTCATCATAAAGAGCACGCAACAATAGCTCCCAAGT
TGGAAGTATTATCATGAACTCACAAATGACTTCTTTCGCATCCAACAAGACATTGCGACG
ATCATCATGAAAGACATCGTCAAAAAGGATGTGATGTTCTTACACCAAAACGATCATGTG
AACTCGCATAGGCCTATAGCGTCAGGGCATGACACCTTTTACGAACATACAATGCATCCT
CCCGGATATGGACGGGTGGAAATTCTGGTTATTGACGACGATAATGATGATATGTCCATT
GAGTTACTACTTTGAATTTTTGTACAATGAAACTTTGTGATGTAAACGGTCCTCTAGAAC
TTACATAGTGCTCTAGTTATTTAGTTTGGGTATGATCAACTTCGTTAATTATGTTTACTA
TATGTTTCTTCTATTTGCTAAATCTTTCTCTTCGTGTTACTTAATTATATTATGTTGCAT
ATTATCAATGCATTCTCTTGGTGACGATGCATTTATGTCAGGGATATAGATCATATATAG
TGAAGAAGTGCTATGTCATGTATATAGGAAGGATTCCAGGAGTGTACGACGAGTGACCAG
AGTGTCGGGCCCAAGTTTTCCGCTTCCCGGGCAGCAAGCACAAAGAGTTTCCATGGAGAG
TGAAGCGGAAGCTAGTAACTTGAGGTTCACGCTATCGCTAGAGATGACTCAGAACCGGCT
CAAAAACTATATAATTGCACTCTTGCTCATAATGATCGCTCATGGTGAAGCGGATGCATG
ATGTCACTATGTTGTAGCACTCTGATGATTATTGTCTGATATAGTTTCATTATATGTGTA
TGTGTATATAGTTTCTACCTATATACCGTGTAAGATGAGCCAAGGAAAACTAATAATACA
TAAACTTATTAGTATCGCGGGGTAAGACCCTAGCAGCAGCATGTGGGGATGGCGCTGCTA
CTACACAAAATTAATAGTAGTGTTGGTCGGCCGACCACGCTACAGGTAAGTAGCGGCAAC
ATCCAACTCCAATATCGTCTTTTTTTTTCAACTCTTTGTAAAAAAAATTTAAGTAATTGT
TTTTTTATCCAAATTTAACTTGTTGGCAAGAATTTCTATGTCGGTTGAAATTTCCGGTTC
ACATACCTCCTAGATTAAAAAATCTATGTCACGTTCGTCGGCATAATTTTCATAAACACT
AAATAAAAATAAATAGTTATAAAATATAATA