morexGenes - Barley RNA-seq Database

Contig contig_1563381
Source Contig contig_1563381
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563381 (7528 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563381

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12477	4	2133 bp	AK373198	Available	Available	None
CDS Structure of MLOC_12477

Contig Sequence (7528 bp)

>contig_1563381 7528 assembly3_WGSMorex_rbca.fasta
TCCTCCCTCCTCCCCCCTCCCCGCATTGCGCCCAGCTCCCCTCTTCTTTAGCCGCAAGGC
ACGCGCGCCAGAGCGACGCGGACAAGCAGGGCGCCGCTCTGCCGCTCCGCATTGCACCAA
GAAGCAGCCGCTCCGGCAGAGATTGCGCCCCTTCCGTCCTCGCTCCGGCAGGCGGCAGCG
CATGCCCGGCTGACGGCGATGCGGTTCACGGCGGGGGGCTCGTCGACGCGGTCGTGGCAG
CCCAGGCCGACGGCGGACACCACGGACCTCGGCTTCTGGCTGCGCTGGCGGGTGGCCGTG
TGCGCGCTCTGGGTGCTCTGCTGCGTCGCCGCCGCCGCATACCTCGTGTGGCGCCACGAG
GGCCCGCGCGCGCACCGCCGGCCCGGGGGCGCCGCAAAGCACGACGCCGCCGCCACACAG
GGCCGGCGGCCGGACGGGCTGCTGTACGACGACGAGGCGTGGCGGCCCTGCCTCCGCGAC
ATCCACCCGGCCTGGCTCCTTGCATACAGGCTCGTCTCCTTCTTCGTCCTCTTCAGCCTC
CTCATCGTCATCGTCATCTCCGACGGCGGCAACATCTTCTACTACTACACCCAGTAAGCC
CGCCCGCCTTCCTCCACTCACTCACCCATCCTCATCATCCACCGCTTGCTTTTACTTTTC
TTGCTCTGTTTCCAAGGAAACATTTTTTTTGTTAAACTTGGGTGATTCTTTTTTGACAGA
TGCAAAGTTGCATTAAAGGTTTATACTTTGGCATTTCCCAGTTATTAGGTGATCAAAATC
TTTCAGGCTGTAAAATTGACTGGAGTGGCAGCCAGCAATGCGGTGTGGCCAGCAGCAACT
TTGGCATCTGTTCTCTCTTGTTGTGAATTTCAAATTTTATCTCAGGGGAGAGGGAATAAA
GGGAGACTTCTTATCATGATTACATCAACTACTCATCTTTGACATGGTTCCTCAATCAAT
AAACTAAGAACACTGAGAATCTGCACCAAATTTCCTTGCATTGATATTGATCTTCTGTGC
ACAACTGATGGCTGGCAGAAGTTTGCTACTACCTAGCTTCCACAGCAAGCCACTCCTCAA
CTGTTGGGTTCCATTTTCAGCGTTGTTAAATTTTTTTTGGGGTTAATAATGGGTTTTACA
GGCAGTTTTTATCCATGCTGGTGTACTTCATTATTGGATAGGACCTCACAGGACATGTTT
TTGTGAAGCACATTAAAGGAAGTAATATTTTTGTGCACTATAATCTCACAACCAAAAATA
AGCAGGGCAGTGTTGAGTTTCATTTCCACTGGTACTTTTTCTTGTGGCATTAATGCAGTT
GTTTAGAGACAGCCTTGATGATGCAGTGCTTCAGTTTAATAATCAGTAAGGACCTCATGG
TAGTGGTAGTACAAGCTTTGTCAAGCACATTGAAGGAACAATCTTTTTTGCCCAGTACAA
TATCACAAGTAAACATAAGCAGGACAGTGCTGTGGGAATAGCACCTGTTCCATTGAGGAT
TTGTGATATCAGATTAGTTTAACAGCCCCCATTATGATGCCATTACTTTTCTGGGGGGCA
AATCTCCACTGTGCTTTCCTTTTCTTTTCCTCCAAAGGAAAAGAAATGTGGTGTGTAACT
GGTTGGTAGCATCAAAGTTGTCTGCAAAGATGTGATACTACTTGTTGGTGTCTGTGACTC
CGCCCTCAGTAACCAGCATTTGTCCCTAGCTTTGCACGTACTAACTGGTTGTTCAACTGT
CTATCACGCAGGTGGACCTTCATTCTGGTGACGGTTTACTTCGGGGTAAGCTAAATTAGT
CTGCCTCCTCACTGATTTCCTCACACACAATGATGAGTGCCCCCACGGCCTCTATCAATG
TCCTCACAATCCTTATCTGAAAAGACTACATGTTGTTCTGTGGATTCTTCAGCTTGCGAC
GACGCTTTCGATCTACGGGTGCAGCAAGTTCGCCGCCTGCAATGCCGTCGCGGCGATGTC
CGACGCCGAGCAGGGGCCTTACGCCATCCACGGAGCCGCCCCGAAGCCGGTCGTCGACGG
GGAGGACGACGGCACGAGGGAGGTCGCCGGGTTCTGGGGGTACCTGCTGCAGATCATCTA
TCAGGTAATTATAGGAGGTCTTCATGCCACCATAAACTTTGAAATGTTTGGCCAACATGG
AGCCCCTTTCCTCCAGATTTCATACTATTGGAGAGGGACATCTGCACTGACATCATATCT
TCATTGCATTTGCATGGAGGGGTGGTCTCATTTTTGCTTTTCAGGTGCAATTATTAGTGC
TCCTGGGCAGTTAACATCATGCACCAGAAACTAAAGTATGCTTATAATGTGCTCTGCTGA
ATTGGATTCCTGTGCATCAAAGATGAGGATGTGACCACATACTAGCATCTTTGTCTGGCA
GATCCTACATGAGCCACCTTCTTGGTTGTTGGGCTGGACCCAAATGCCCAATCTCTCACT
AGTTCCTTGCACCTGAAGGGCTGAAGGTCTTGATCACCTTTACCCCATAACTCAAGTGCA
GGGCTGGTTCTTTTAGCAGTAGCATCAGAATAAAGACAAATTGTTTGTATTTTTATATCT
GTTGATTTGCTAGGCCTGACTATATCAGAATTATGACTGGGCATCTCTCTAGGCTTTAGA
TAAGGGTTAGTAGATATTTCCACAGATACTAACTTGATTCAGCGTTCTGTACTATTGGGC
AACAGTCTACACTTCACAATCCTGTTTTCTTTTTCAACTGTACCTACAGCAGAAGAAAGG
GGAAACAATAGTAGAAAAAATGACAATTGGCAACTTATGCAAGCAGTTATCATTTTACCA
CCATTTCACCAAATTATTATTCTGACGTCTCCATCTTTGTTGACGCAGACAAATGCAGGA
GCCGTGATGCTTACAGACTGTGTCTTCTGGTTCATCATTTTTCCATTCCTCACCGTCAAA
GATTACAGTATGAACTTTGTAAGTATGTTTTGTCAATTTCATGGTACTGCATTCATCATC
TAGTGATGTTAATCTGTTCGCTAACTTCAGCCTTGTCTGACAGTTGCTGATAGGAATGCA
CTCGGTCAACGCTGTTTTCCTGCTCGGCGAAGCATCGCTAAATAGCCTGGTAAGTGGATG
AACGCTGAACTTGATCAGCCAAGCAAGTTGATGCATGTTTTTTTTTAAGTTTTACTTACG
ACTCTGATTCAACTCACACACAATTTTCACAGCGCTTCCCGTGGTTCCGGATTGCGTATT
TCTTCCTCTGGACGGCGCTATACGTTGTTTTCCAGTGGATCGTCCATGCATCTACTCCAA
CCTGGTAAAACTCCCAGCTAAAACCCCCTAGTTTCCATTCCTTCCGTAGAGCAAAAATAC
CACCACCTGCATATTATCTTTCTGTGACTGAATATAAGTTATCTGAATTCTGGCAGGTGG
CCCTACCCGTTCCTCGACCTCTCCTCTAATCTGGCGCCTCTCTGGTAATTTCATTTACCA
CCTTATAAAGCAAAAAAGAAAAATCCTTCTATGTTTCACATAGATTTTTATGAGCTGAAC
ATATAGTGATCACAAGCTGAACCAAGTTCCCTGAACCTATTGCGCAGGTACTTTGCGGTT
GCGTTCATGCAACTGCCCTGCTACCTGATCTTCAGACTGGTGATGAACCTAAAACACCAC
CTTCTCTCCAAGCATTTCCCGGACAGCATGGTTCTAGGATACTAGCACCGGTGAACAAAC
TTCCATTGCCGGTCCTCTTCCTTCGATCCTCCACACAAAAAAGGCGGTGCGAATCGGCAG
GAAAGAACAGCAACCGTACAATGGTGGCGTGGTGTGGCAACTCGGCTCGAGTTCTTTGCG
AGAAATCTTTAGTTCCTTACGCATGTGCACGCGTCTCCGAAGAAAACAACAGGGGAGCGT
GCATTTGCATTTAGACTGGTATAGTTTCGTGACGGTAAATCGGGGTGTCACGGATGGTAA
GAAGAGTTTTTGCAGTGATTGGGGGTGAAAGGAGAAAATGAAAGGAGAATTTGTACATAC
ATGCAGCTTGGTCGATTAGTTGGTGAAATGGAGATATTGTTGATTAATTGATTATTACTT
GTAGTATATAACCTGTTTTGTAGATTGGCTGATTGGTCATCATCAGCTTACCTATGTGGC
TAATGTAATCGTCGCAGGGTTACATGTTTACAGATAAACCCTATGGGCTGGAAATAGGAC
CCTGAAAATGGGGACAAAGCTTTTTTCTTTTTCTTTGAGAAACATCGTCACGAGGCACCG
GTTCCTGCATTTCATAAGGAAGAAGAAAGATGTTTCAGTTTATAAAATAAAATTGGACAC
AAAAACCTAACATGCTCGGTTAATCAAGGAAAAGCACGTGATCACCTAAAAAATAGAGTA
AAAAAAAAAATAGAGATTGGGGATATATAGGGACAAAGACAAATGCAACATTAAGTGACA
TCGTCGGGAGCCGGTGGCACAAACTTACAAGTATATGCTTATGTCTGTGATTTTACATTA
TTTTTCTTAAGAGATGGTAGGCGATTTCAAAGTAAAGTCAGTTTGTTCAAGGAAGATTCT
TGTGAGGGAAAAAGGTAGGTTGGCGTCCAAGGCTTGGAATGTGGCCATCTGATAGATAGT
AGTGACCTGATTTTGGTATCGATCCACTCTCTTCTCCCAGCAGGGCTAGCTAAGCTACCT
TATTGTAGCACGATCGATCGATCTGATCAATGATCATGGCCCGCCTTTGGCCAAAAAGGT
TTTGTCATCCATACCGATGTGACCCAAACTAGCATTAGCTAGCTAGCTAGCCCCTTAACG
TAATCATGGCGGCGACGAATCGATACGATCAAAGGTGTGAGTATTTCTGATGACAGAATC
TGATACTTGCTGTTCTCGAAGAATAAATCGGAGGATGGAGCAGTTGTGATTTGGGAAGAG
GGAGAGGGGCGTGATTGCCCAATGAATGCCATCTCCTCCTCTCCTTTCACGGACTGCTGA
CCGATGGAGGCTAATTTCAGTGTTTTGATTCTTTTACGAAAGTTAAGAAAGATTTTATTC
CCATGTAAAAGAAATCTAGATCTGACCATTTTCCTGTCTTCGGAGTCGATAGCATCATGA
CGATAGGGTATACCAGCCTACCACTGAGTCCTTGATGGTAAGCAATTTATCCACATTAAA
GCAATGCAATCCAACCGTCACAGACGCTCGTGGAAGTCTATGCAACCCTACTATCGGGGT
CGATGCTGGTAGGGTATACCAGCCTATTAATGAGTTTCCTAAGGACGGGCAATTTATTCA
CGTCAAAGCAACGACGCAACCCTACCATCGAGGTGATCGACGATAGATCCGTACAAGCAA
TATATGAATTTTTTTTCGATAGGGCGTGCACCCCTACCGTGAGGGGCCTTGACGGTAGAC
AACTGTACGCTACCGTCATCGACCCTGACGATAAGGAAAAAGTTGGATCTTGATTTTTTT
AAACCATGGTTTAATATTGCTCAACTTTCACAAAAAAACAAAACACTGAAATTAGCCATC
GATGGACGGATAAGAATGGAGAACCAGAGAAGGTCGGCGTACGGGAGTCGTTGGCGCCAT
CATCAAGGTTCCAAACTTCCAATCCAAGGGCAAGACGCCATCCTATTTCTGCCTAGGCTG
GCGGGCACATTCCAGCATGCATCTCCTCCCATGAAAGTGGAAGTGCTGAGAATTTCGTGT
ATTAGCTGAGCAGCAATTGTCAATTATCTACTCCCTTCGTTCATAAATATGTACTTCCTT
CGTCTTAAAATTTTTGTCTTTGATTTATCCAGATATAAATGTATTTAGTCACGTATTAAT
ATTTTGATACATTCATTTTTAGAAAATCCTAAGACAATAATTTTAAGACGGAGGGAGTAT
TATTTTAAAGATTCAACTATGAGGTACATACAAAGCAAATAAATAAACCTACATTCTAAA
TTATGTCTTCGTATGTAATTTATATTAAAATCTTTATAAAATATACATTTAGGAACGCGA
GGGAGTAATAAAATACTCGTGAAGGAACGCGAGGGAGTAATAAAATACTCGTGACTAATT
AGTAGGCTCCTCTTTCTACTACTAGAAGTGTTCGTTCTATAGCTAGCATCGACACGTGCA
GCAGCAGCTAGCTAGTCACGCTTTGGATAACTTCTGCATTTGGTTGTCTGGAAAGATCAG
CTGGGGCCGTAGCCGGCCAAGTGTTATCAACGATTAAATTAATCGTGCTCGATAGATATT
TAAATATGAAATGGACGTACGTTTACGTAGGAGTATCATGCATGGTGGTGATTACCATGA
TGACGCCCACAATCAGCTGATCCATCTTTGTACTAATTGTAGTTGTAGGGCATGTGCGTG
CACTAGCACTAGTATGTGTCTTGTTGATTGTTTAATTATAGAGCGGGCCTCGACTGAGTT
CTCTATGGCGGTCGATCGTTAGAGCATGGCGGACTTAGCAAATAAGACCATCTAAACGTC
TAGAGTCTAGACGTGTCCGTTTAGTGATTAACCGTGTCTTTTATTAGTTCATTTGTGTAG
TTATATTTATTTTTCGTATGTCCAATCGCTTATACGTGATTGATGAAGAGGAAGAAAAAA
AATGAACTAATAAAAAAAATTGATTTAAAATGAGGTCGCGTCCTACATGACGGACTGTCA
GAGTGTGTCATCCCTTATATTCTCCTTACATTTGAGATGAATATGAGGGATGTCGCTTAG
TCTGAATATTTGAGAAGAAAACAAAAGGTTCGCTTGGGTTAATTTTTTTTACCCAACACC
GATTGAAAAGGCGTTTCGAACATTTGAGTAGAATATAGGGATGCTCTTATGTTGGCTTTT
ACCGTTGATCCCGACGGAACGCGGACTTTGATGAATAGTGTCAAGATTACACGAGACAAG
CCTACTATACTTGGTAGGACTGCCTCGACTGAGTTCCCTACGGTGTCGGGGCCTGTTGGT
GTGTTCGGATAAAGGCGGCGGTCATAGGGTTTTTCTTGCGCTAAGACGAGGATCTGCAAT
GACGCTTGTCCTTCCTGATCTGGTCGTAGTGGCGTGTTCCGGAAGGCTCCGCCGATGAAT
TCCCATGGGCGTGCTATGCCTGAAGATTGCTGGATCGGGTGAGATTCGACCGTGTCCATC
GGTTCTCCATTAAGAAGCGAGCGACGCGAAGCTCTGCTATGTGTTGCCATCAGAAAATAT
GTTTAGCTACTTGGTGAAGTCAGAGGCGGAGAATGTCATGAAAGTTGAGATTGAAGGACC
TATAATGGTGATTGGAGCCTACAGCGTTAAGGAACTTGGTTTGAGTTTCAGGATTCATAG
CAATGGTATGTAAGTAGGACGATAACACATGTGAAGTTCAATGTCTTGTGTTTTTTTAGG
GTGAAAATTCAAGGTCTGGCCTTAGAGCATCTCCAACAGCCGNNNNNNNNGCCGCGCCCA
AAAAATGCGTTTGCCGCGCGCGCTTCNNNNGGTTTAGCGCGGGGATAGGCGCTGGTTCCA
AGAGCCGCGCTATAATGCAGCGCGCGCG