Map Locations of contig_1563320 (5681 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1563320

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12452 6 2113 bp MLOC_12452.2 Available Available LOC_Os05g51150.1, FRAME:-3, EVALUE:0.0, 13105.m05505 protein RNA polymerase sigma factor, putative, expressed





CDS Structure of MLOC_12452






Contig Sequence (5681 bp)

>contig_1563320 5681 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATTACGTGGATAATAAACGATTATCTTGATATTGGAATTATAATAATAACTA
TATGTANNNNNNNNTCTAGGGCATAATTCCAACATCTCTATCATTAGTGCTACTTGGGTT
TCTCGTGTCAATCTGACTTCATTGCCGCAGCTCACCTTCGACTATCTTTGTTGATTGTCG
ACCATCGGAAACGAAGAAATCTATCGGTGCGCACAATGCCACTCTTGTTCTGTGTATCAA
AGTGTTCCTTCATCCGGTCCCAATGTGTACCTCTACTTTGGTCCCCTCCAACGGTTGCAT
CCATAGACACAACCAACCATGCATGGCATAGCAAGATATCTTCGTCAGTGGTGTAGTTGC
CCGCTCTTCCTTGCGGTGCCTCGACGATTCCCTCACCATCTTCATCCACCCCATACTCAT
GACCATCTGCATGCACTTCATTGGTTTGAGAGCAATGAAAAATGTTGGAGCCAACACCCA
CAGTTGACATATATGTGTTATTATCGAAACAACAAAGCAATTGAAAGAAAACTAAGCTAT
CCATATGCATTCATTTATGTAAAAACAACAACAAAAAGGGACAAAATCATACCTTGTGGG
CATTTCATCAAACACCTTGTCCGTGTCGGGCGCCCGCACAACAAATTACGAGCTCTCCGG
TACTTCTACACTCGGTAGAGCCGCGACCGGATGCCATGCAAGTTTCTTCTTCGGCCGCCT
AGTAACATCGTCCGTTGCCTTTTTCTTTCGAGATGTCGTCTCCGCCGTAGCCGCTGCCGC
ATTCGGTCGCTTGAAGACGGGGCTCGTGGCTTCACAGTGGGCGGTGGCGCGACGTCAACC
AGCGCTGGTCGTCCGCGGCGCCATGAACAAACCGCGCGCGAGGCCAATGTTTGGAGGTGG
GGTGCCGGCGGCGCTGCTTGGAGGAGGGGCGCCGTCGGCATCGGCGGAGGGGTCGTGGGT
GTAGGGAGGGTTTGGGGGATGTCGCCGGTGCGTTTCATCGGGCAATTTCTCTGGCGACAG
CGCGGGGCGGCTGGAAAGGCAGTTGGTCTCGCGCGCGAGTTCGATTTGCTGTTCAACGCG
CACGGGCGCCTGCCAACTCTACAACATGCACGGGCGCCTGCCAACTCTACAACATGCACG
GCTTTAACGCATCTGCTGGAGCGCCCGATTCGAGTAAGCAGGCGCTAAAAGTTTCTTTTT
TATAGCGTGCCGCTAAGATAGCACGCCAATTAGAGTTGCTCTAAGAAAACTGAAAACTAA
AGAACTTCATTTTTCATTGTCTATTCACCAACATATAATCAGGTTAACCCCTGTACATGT
ACCCATCAGCCACCATCGGGACAAGTGTGTCATGCGCTGCAATGTAATTCAAATATATAC
AAACTCCTATGGAACCCTGCCACAATCTCAGTGAAAATTAGGCCTCATGGCGGAGCTACA
GTGTGCCAATCTGCACTAGGAAGGTAGGTGCCAGCTCTAGAATCCACAGAAGTCCTTGAG
CTCATTGTGCACGTCCTCGTTCCTGAGCTTCGACATGGCCGACTTCTCGATCTTCCTGAT
CCACTCCTTGGACACGTGGTAGATGCCCCCGATCTGCTCCAAGGACCGGCACCTCCCATC
CTCGAGGCCGTGCCGCAGCTTCAGCACGCGCCCTTCCCTTGCCGGAAGCCTGTCCAGAAC
AAAGAGAAGCCTCTCCCTCAGCTGCCTCCGGAAGATGGCCTCCTCGGGGTCTTCTAGTGA
TGTGTCTGGGGTCACGTCCTGCAGTTCAAACACCCTTCAGACAGATTTATTCGCCGTTCA
AATAGACGTACTGTATGTACTAACTGTAGTTTCTCAGATAATGGGGGAGTTGTTAATCTC
TTATCTGAAAAGTTTGTACATTTCCATTGATTCATTGATCATTCATAACTCTGGTTTCTG
AATGTGAGAGGGCATTCAGAGAAGGCTAGAGGGCAATACCACAAACTTGGCGTTCTGTCC
GGCTCCAACTTCCATATAGAGTGAAACGACACGACGGGAGCATTTCCGTGCCAATCTAAC
ATTGGCAACCGACGCGCCAACGAAGGTCGCGATCTCCGCGTCTATTGGGTTCCTCCCAGT
GCTGGATCGAATTGCCCGCTTAGCTTCCCTGAACTTCCGGATGATACAATCCATCCTTGC
CTACACTTGCATAATTCCATTGTCAGTTCCATATCATCAACAAAGGTATATGATTTTCTT
TTCTTGCAAGAAACACAAACTGACACATATGGAAATAGTTGTTGGTTTCAGAGGCATACG
GGCAGCTGGATCACTCCAGAATTTTCAGCGAGGAGCGCTAGCATGGGTTTCCTTATCCAG
TACTTCACATAGGTTGAGAATTTGCATCCTCTCTGGCTGTCGAACCTCTCAGCACCATCA
AGGACACCCATTTTCCCAGCCTGCATTGTCATTTCCAACAAGGCCGGTTACAAAAGGTTG
CTAGTTGTCAAGGTACAGGAGATAAGGAGAGGTTAAAAGTTTAAGCTTGCAACCTGGAGT
AGATCCTCGAAAGCTGTTCCCATTCCGGTGTATGTCCTGGCAATGTACTTGACAAGCCAC
TCGGTGGTCACTAATAACCTCTCTCTGCAGCAGTAGCCTGCTTGCAGTCTACTCTTCAGG
ACCGCTTCATCAACTCCAGCTGCTTTGGCCCACTTATGATAGCAGACCTCCTGACCTTCC
TTCACCATGTTTTCCCTGATCTTCTCAAGGTTTGCACATTCCTGGGAAAATGTTACAGAT
GAGGACATGAACAATATGCCAATGAGAGTACTGATGAGGGGGATACCTTGATAGTCATGA
GCAACTCCGACTGTTCGCGAACTATGCTCCTTCGCCGGCCTGGATAGTTTTTCCACTCGG
ATATAAATTGACTACTAGTGGACTTGTGTGATTTTCTTGCTTTTCGTGAGGATGCTTTTA
CACAAACCCCGGAGATGTTTTCTAATGCTCTAATTCTCTTGAGTTTCCTCTCTTGGCTTT
TTCCGCTTCGAATAAGGACCAGTTGATCGTCGCTTTGCTCACTGAGAGGAGTCACCGGAG
CGAATTCAGCATCATTCCAAATGAGTGCAAAATCTGATTCAAGTGAGGTCGGTGTTATGG
TGGCGCTGGACCTCGAGGCGTTAAACCAATTCAGAGCTCCAAGCTGTTCAATATGTACAA
GGATATCTCTCTCCAGCATCACCAAATCTTGAGCAGTCAAACTACTCTGTAACACATGGA
TGTTTTGCATCAATAAGTTATACTCCAAGCTGCTGCTGCTGCTTGTGTGTGCTACATTAA
TCCAAGAAGACATGTCCTCGTAGATCATGTCGAACTGCGCATTTCTGTCAAGAGCACCAC
CAATAAGGGATGTTCTATCTGCATCCACCTGGAATTGAGAATGTGGTCATTTTCTGTACC
AAAATTCAGAAAAGTAAGACCACACATGTGACTGAAACAGGGTGTGGGACCTTTGTTTTC
GGCAAGCTGGTTGCCTTGTTCTCTGTTATCTGAAGCAAACCGGATGAAGCTGCAGCAGTT
CTGGTGATGTCCCCCTGGCGCCGGCTAAGATGAGCGCGCCGATTGAGCAAGAGATGCAGG
GCCAGAACTCTCAGGGATTCAGAGCAAACTGACCTGCCACCCACTGCATCCAGCACAGAA
ACAAGAAATGTTCAGATTGCGACCTACCAAATTATCGATCCATCCAAACATCCAGTCATA
CAGAGTCATTCAGATTTCAGACGATTATTAACCGTCAGGTAACTCTGTTCTCGCACGGGG
AAGAAAAGAAGATTGGACAAGAAGTGAAGAGAGTCGAGCACTCACATCCATGGCGAGGGT
GGGGGTGCCTGGGAAGATGGGCCTGCAGCATCCACGGCGAGGAGGAGGAGGAAGAGGACG
AAGACGACGGCGAGGACGAGCAGCAGCACGGGCCGCGCACCATGGGCAGACCCATGGCGC
CGGACAGCTGCGGCAATGGCAATGGCAATGGCGCAGGTGGGGGATAGAGGATGGACAGAA
GAAGGGGATAGAGTCGCAGGGGACCTATCAATCCCCGTTTCTGGTTGGGCAGGCGAGCAG
AGAAAAAAGATGGCATCTTTTGAGGGTGAAAGTGAGCTGGGATCTTTTTTTTGTTTCTCT
CATGAGATATTTTGCCGTCTTCTCCTCATATCTAGACAACATGAGAAACAAATTTAATTT
AATTTTGAAATATGAGTATAAACACATGGTCAAACATGAAAAAGTATGCGAGGGCTTTAA
CTTGTCTAATACAGCCGACCAAGATAACTAATTTGGGACCAAGGTAATACATGTGAACAT
GTTTTAATTTTTAATTCGCTTGGGTTTAATTCTTTGTTCTTGGATACATTTTGATTCCTT
TTGTTTTTTCTTGACTTGACAGATGCTCATTTACAAAAGAATGTGTAGTTTGGCATTTGC
CGGAAGCAAGACTTGCACTTTTTTTTGGGTGTAGTTTTAAATTTAGAAATGTGTACCCGG
GGTAGCTTGCACTTTTGAGAAGCTGGAATTACGAATAGTTGTTTTTGTGTAGTTGTGGAT
TTAGAAATGTGCAAGTTTTTTGTCTACGTACTCCCACCATTTCCATATATATATATAGTG
TATTAATTCTTTAGTACTCTCTTCATTTCATAATACAAGAACATTTTCTACACTAGCCTT
CATCTCATAATACAAATGCTCTTGTATTATGAGACGGAGGGCTAGTGTAAAAATTGCTCT
TATATCATGAAACGGGGGGGAGTAGAATTTGGGCCTGAACTACTTTGGAAAGAAATGGTC
ATGGAAGGTGCAGCGAACATCCACATGGATTTGTACAAAGAGTGTGCAGACGGGGTTATT
ATGGTATAAAAGTACAGCTTCACGTTATGCTTTTGTTTTTGGAGCAACAAACCATGTGCG
CTACATATTAAAACGGAGGGAGTAGTTATTTTTGATAATGTACCATTTTTTTTAACTAGG
CATGCATTAGTTTTAAAATTCTTGAACTGTTAGATTACAATATGAGATGGGTATTTCCAA
CTCTCTCGGCCAAGTTTTTGCATTATTATTATTTTGAAATTCTAGGTTTAAAAATGTACA
ATTTGGGTTGTTTGCACTTTCGGAGGGAGAAATTGCATACTTTCTTCATTTTTATACACA
AGGCAACGAACTCATATTAATTAACCGATATAAAAAATTAATGGCTACTTAAGCCAATGT
TGCAAACTAGTCTTTTCTACCTCTCCAACACACAACAAGACAACTCTCTCACTCCTCTTT
GGTCATGGGTGGATTTGGGCCCCCGGCAGCCCAGGCCATTGCCTCGGGCGTGAAGAAAAA
TACTAGGCCTATATATATATAACAAATTGGTTTGGGGCGCAGCCATATTACAGGCCCAGG
CAGAGTCAACCTGCTGGCTAGCTTGCGGTCACGTGACCAGCCAAACACGACCCCGCGACG
CCTCGAACCCTAGACGTCTCCCGTCGTCAGCGCCCGTTATCTCCGCTTGTCGTCACCGGT
CGCCGCCTCTAGCGCCCGGCTCCATCCCCCCACCAACGCCCGATCGACCGTCCCCATCCC
CGTTCCAGCGCCCGACAGCCGAGACAGACATCCCCCTTCCCCAGTGGTTGCAGGCTTGCG
ACTACTGCCATGTCAGCCCCCCCCCGCTGCCCCCCCCCCCC