morexGenes - Barley RNA-seq Database

Contig contig_1563278
Source Contig contig_1563278
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563278 (5234 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563278

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12434	2	1451 bp	AK369742	Available	Available	None
CDS Structure of MLOC_12434

Contig Sequence (5234 bp)

>contig_1563278 5234 assembly3_WGSMorex_rbca.fasta
TCGGCGTGCCTGCTGAACCGCTCTTCCGATCTTAAAAGGGAGTGAGGTATTATGATGAAT
NNNNTGCTCAAGTGCTTAGAGGTAGCGACCAAAAATATGCTGCCATTCTCCCACAAAAAA
TCTCTGTCCAAAGCTACATCAGCAAAATCGGTGCCAACAACTATTTCCACTCGGCCCTAC
CGATTTTCCACCAAACAAAACCTAAGTTCCGTTGAATTTCGTCTTCAATTTGAACGGATT
TATCTTGAAAACGGCGTCTGGGGCCGACCTTTGGGGCGCGACTGGAAAACCGAGCCCCCC
AAGCCGGGTTTTTTGCCAGTTGGACCCCAGGCGGCGCTATTTCGACCCCTGAAAGCGCCT
AACGGCTGGAGATGCTCTTATTACCTTGCCTGCTGTCGGCAAGGATTGCGCCATAGATGA
TGTTGCTATGTGTACCCATTTGCATTCTTGTTGTCATGGTTGGGGTTCTATGTGTAAACG
GGGAGACATGTTTTAAAATCCTGACTAGAACCGTCACGAGGATAACTTTCTTACAATGGC
GATGTTGTTGAAGAGGAATACGACAGATTGTTACTTCATTTGGTTTTATCCTTCCAAAGA
GATCGCCTTTTTGGTTTCCTCAAGGAAAGACGCGAGAGGAATGGCCTATGACTGCAACAT
CTCAAAAATTCAAGACTTAGGCAAGGGCGGTGATCTGCATCGGTGCGCCAGCCGAAAAGT
TTCCGCCGGTCGCGCCTCGCCCGTTGGATGCGAGCCCGTGTGACCATTGGATCTGAGTAA
AAAAATCTCCTCGGATTCGTCTTCCTCGGGTTGGATTCCGCAGCTCCCGCTCGGGGTCCT
CGTCGTCGCGCCTCCGATCTCCTCCGGCGGCCGTCCTCGTCGCCAGTCCACACCCTCGCC
GACCATCCTCGTCGCTGGTCTACATCCTCTCCGGCCCTCCTCGTCATCGGTCCCCATCCT
CGTCGGTTGTCCTCGTCGTCGCCTCAACCCGTGCAACAACTGCACATGCAGTTGCAGCTC
TCACCGGCGACGGTTGTAGCTCCCCTCTGGTTGTAGCTCCGTCGCCGCCCCTCACCATTG
ATGCTCGCTAGTCGCTAAACGGAATTGCGTCGGCGGCGGCCACCAGTAATCCAACGTCGT
TGAATGGATGTAGCAAAGAAGTTCAACGGTAGTAGCAAAATCCAAATATGGTTGCAGCAA
AAATCATCGTCGTTGTCGTCGCGAAGTCGCAACACCGCCTTGATGGATGTAGCAAAAAAG
TTTATCAGTAGTAGCAAAGTACAACTATGGTTGCAGCAAAAATTCATCGCAACCGTCGCT
AGGTCGCAGGTCAGCTTGATGGATATAGCAAAAAAGTTAGCCGATATGAGCAAAATGCAA
CTACGGTTGCAGCTTTTCATGCTAGGCGGAGGCGATTGAAGCTTTTTTTTGTCTATGGTT
GAAAAAAAATTCAACAACATTTGAAGTTGTTTTAGATGACGGCTTCAACGCTTGTATAGG
TGCAAATCCGGCCATAACAGCAAGCGACGAGGACGATAGACGGAGGTTGAAACCGACGAA
GCGGACGACGGACGAGGGACGAAAACCAGCGATGTGGTCGGTCGGACAGGGGCAGACACT
GACGATGCAAATGGCAACAACGCAGGGGCGAGCGTTGGTGGGCCCCTTGGGCCATGCATC
CCACCACACGAGAGAATCAGGCCACCAGACCGGCGGAACGTTCGGCCGGCGCTCTGGCCC
GAAACGTTTCCCGCAATGTGTGTCGAGCAGATTTCGAACCCGTCTGCGGACAACCATGTG
GAGAGACGTACGCAACTTTCCGTACGCGTCCTGCTAGATATACAAGTTTCCTATAGACGA
TTTTGAATCTTGGAATTGGAAGAGGAATCCAACTTTTTCCCATTCACGCGCCAAGAGGGT
CAAGGACTCTCAACAACTTTTTCCGTTGGCGCTAAGATCCGTCGCAAACGCCGCTAGTAG
GAGCACGCATTCGCCAATGTGAAGGCAAAGGCGACCAAGTTTGACCTTGGCAAGACCACC
AAGAAGCTAGTCACTGGCTCACTGCCATAGCTGGATCTGGCCTGCTGCTTGATTACTTTT
CTGAAAGCAAAGATGAGTAGGACAGTTGGTGCGTGCAAACGATTTGGAATATCAACCCTG
TTCGTAGCCACACTTGTAAACTTACTTTAACAGTTATTATGATACATACATAAAGCCACA
AAGTTCATAGCCAACCCTGTTCACTGTTCACAACATTCACTAATTACTCTAGTATACAGT
AGTAAATAAAACCACCATAGTTCAATCGTCTGGAACCAACATTTTTTTCCCATATTTGCT
GCAAGCGACAGGCATGCGGAAGACACTGGCCATAACACCAAATTTGATCCGCGGGCGAAA
TAGTCAGGACGTTTGTTATGGTTTGTCCTGCGGTGTTTGAAGAGAATAGCCGTATTTTTT
TTATTATGAAATCTAGTATTCTTCTTCAGCAGCACTAGCAGCACTCAAATCAACGGTGAG
ATCAATAGCCTGCAATGAGAAATCAAGAATAAAGTTAGAATGGAACCATACCGGTCAGGT
TCTATAAGCTAATTAAGCAGACACCTTTACATGGTATTCTTGTGCAATTTACTCCCTTTG
TTTAACAAACCATACAACGGAACAGGAGGGGAGGGCAGGAAAGGTACTTGTATACCATAA
TAAAGGAGGTACTAATAGCATGTACAGGCGTAGTTAGCTCCAACTACTATCAAGCAGGGA
GAATATCAGGTTATATCACCACTTAGATGATCTCATGCTACCAATTTGAAAATTTCAGAT
TTAGATGTTCCAAAAAATTCCAAGAAAAATTGTGAATGCTCAACACATGTGTCAGCAAAC
CCTAAACAATTCAGATCCAATTTGAAAGTACACATTGATAAACAAAAAAATACAAATCCA
GCATGAATAGTGTCAATAAAGACAACAACATGAATAGTCTGAAAAACTACAGTATTCATA
TCTGGATTTGTTTTTTTTTCTCAAAGTTTAGCCTACAAAAACGTCTTATATTGAGACAAA
GGTCGTATATCGAATTTAGATTTGAATTTTTTAGGGGTTGCAGATACATGTGTTGTGAAC
ATTCACGATTTTTCTCATAATTTTTGAAACATTCAAATTTGAATTTTTCAAATTGGTATC
ATGGGAGCATGTAAGTGGTGGTATCACCTGATATTTTCCCCTGTCAAGCATTACAAATTT
TGAAAGGAAAATGAAGATGAAATATTACCTTTCCGGTGATCATTGTATACATGTTAAGAA
CGTCTGTCACAGTTGTCTCAAAATGTGTGGTAGCATCATAGCTCTACAGAGAAATAAACT
GTCATAAACATCCATAACAGTCTAAAAATAAACAAAACCTCTTGTTATGATACATATACT
GCAAAATTTACCGTTGAGATGAAGCAATTATCAAGAGATGGTTCGTTCACTGGTTCATAT
CTGTCATACATATCAAAAAAGAGCTCATCCACTGGACCAAGTAGATCAATGCCAGGCTTG
AGTTCGGATTGTATATTATCACTCTCCGCTTCTGCAGAGACGAATGCAATGAACTTCCCT
TTTGGTGCGACGTTGTGGGTGTATGAGCAACAGAAGACATACCTAACAAGAGCGGACCAA
TAGAAATATCATAAATGAGGATTGCGTAATCATTCAATCAAGTGATGAGCAGTAAATCTA
GTCATCCATCAAAAGAAAATTGTTTGGGCTTGAGATAGGCCTCACATGTCTGAATTGCGT
CCAAGTTGTTTCTGTGGCAAAATAATCTGGACTGAGTGGGACTCATTTGTATTTGGGATT
GGATGGCTCATAATAGCAATTGCACGTGCAACTTTGCCGATCTTTCTGACCTGTTGAAAA
ACATGAGCAAAGCATCATCATTGGAAGCAATGCATAACAAAAGCGCCAGATGGTTGTAGT
AAATATGAACTTCTCAAGAAGGGAAGGGAATAATGAAGATAAAAGGCCAAAGTTAGATTA
AATGTTTGCCATGTATTAACCTTGACAGAGTGCAGGCAAGAAGAATATTCACCTTGTTGG
TCAAGTACGAAGGATCACAGACAACTTTCTTGCATTTTGCGGTTTCACCTTCTGATGTAA
CACCACACGCTTTTCCTTCCATATCGAATTCAACCTACAAAAATTAGGTGGCACAGGTGA
AAGAAATTGTGATTTACCATACAGATCATGTGGGTTGCTAATAGGCAGGTGACAAATAAT
ACCTTGCATTCTGGCTTACATAGCATGTAAGTACCACCATAAACAGCACTTAGACGTGCA
AAACCCTGCAGCATAACAAAGCATTGTAACAAATGAGCATCTTAGTAACATGTATGTGCA
GTATGACAATAAAGGTATAGCAAATTGAAAACAACTCACTGACCTGTGGCAGCTCACCCA
GCCCATATAGAGGATAAATATAAGGCGAGCCCCCTTGAAAACGTGCAAGAGACTCTGAAT
ATAACTAAAAGCAGATGACGGCAAAATGTAATTGAAATCCATGAGTTACACAATCAAACA
AAAGCAATGACACTGCTAAAAGGAAGAACAACTACAGGGACTGGACTATGAATGATTGGT
AAATACTCCCTCTGATCCAAAATAAGTCTCCCAGTTTTGAACCAAGGTTAGTTCAACCTT
AGTTCAAAACTGCGACACTTGTTATGGATCAGAGGTAGTACATGATAAACTTATAATACC
AAACAAGGACCAACTACCAGAGCTTTTGTCAAGACTTACTTTCATCCTTTTCACAGTATC
AAGTGCTGGTTCATTGAGGTGGCGATCATCCCTATGGAGAGCAAGCGCATGGCCAATGAA
ATCCACTGTATCATCACTTAAGCCGTGCTTTCTGAAAAAACACAGATGGAAAATATAGCT
ATTTTTGTGGAGAAATGATAATAGCAAGACCAGAAAATGTCCTTTCACACCATGTACAAG
GTTGAAGGCCAGGGACTACTTTTACCATTAATAAAAGAAGCGAAAAAGTAACTGAAATAG
GTTTACAGTAGGGAAGACAATACAGTAAGCGAATTTCTGAGGAAACTGAAAAGCTGGACT
AGAACGATACTGTATTTTTTTTATTTTTTTTTATTTTTTTAGAGAAGGAGGTTAAACCCC
CGNNNNNNNNNNNNNNNNATGCATGCAGCCATCTTATTAATTATTCCACAAAGGTCTAAC
AAGAGTATACATCA