Contig Data
morexGenes
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Map Locations of contig_1563249 (5928 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1563249

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12419 3 1969 bp MLOC_12419.1 Available Available LOC_Os01g64270.1, FRAME:+1, EVALUE:4e-63, 13101.m06918 protein expressed protein
MLOC_12420 2 3498 bp AK370305 Available Available None





CDS Structure of MLOC_12419






CDS Structure of MLOC_12420






Contig Sequence (5928 bp)

>contig_1563249 5928 assembly3_WGSMorex_rbca.fasta
GAAGGTGCGCCAGTTGCGGCCGGAGCCCAGGAGGCCGTGGAGGACGAAGGCGGTGGCGGT
GGGCGGCTTCTCCGGGGAGAGCTGGATCTCGTGGAAGGCGAGGGTTTCGGTCTGGTGGGC
GGCGTCCGAGTGGACGGGGGAGGAGAGGAGCAGGCGCCAGGGAGACCATGCGGCGGGGGA
GGAGAGGAGGCTCGAGCGGAGGGAGGAGGAGGACGACGCTCGGAGGGAAGCCGCCATGGC
CGATCGCTCCGCGGGGCTTCTCGCCAGGCGCGACGCGGCTATGGGGGGCTGCCCAGCCGA
AGAGTAGAACGAAAAAAAAAGTTATAAACAAGAAAGAAAAATGTTGACAGCTGTGGGATT
TGAACCCACGCCCTTTCGGACCAGAGCCTAAATCTGGCGCCTTAGACCACTCGGCCAAAC
TGTCTTCGCTGTACGTCCCGAGGTGACAACCTTGTTAACCAAAGCCTAAATACGGTGGTG
CACTGAAGTACTGAACCACGAGACAGGAGGAGGCCGACCAACCAAATTCTCGTCTAGGCG
GTACCAGCTGGTCCATTCATTTCTCATCCCCGCAGGTTAATCGGGTGCACTCGTTAACCG
GCCCTGCCATTGCACTCTCTCAAGCCTGAACCTCCGTCCTTCCTGCCTCCCTCCCTCCTC
CTCAGAAAGAGAAAACACATGGCGGCTGCGACTGCAAGGCAGCTGTTGGTCCACAGGATC
ACTTCCTCCTGCTCCTCGGGGACGCTTCCCAAGCACGCTTCCAGCAGCCATGGCATCTCT
GCTTACAGCTCCAGGTGCTTCCACAAGGCCGAGAAGCTCCCCGGTTTCAGGGCGAGGGTG
CCCGTGAAGCCGCCGCGCGCCGTGCCGGGGAAGGCCGGCATTGTGCCGGCCGACGATGAT
GGGGTCAGCCTCGGCACCGTCAAGCTGCCCGCCAACATCGACGTCGCTCGGTTCGAGGGG
CTGCTCTTTCAGGTCAGTAGTAAGCATTCCTTGGACTTGGAGTATGATGTCTGGTCTTGT
CTCTCTCAGCTTAGGCCTTCGGGTGAATTGGTTGGTGTGTATACACAATTCGATACACCC
ACCAAGTAGAACTGATATTTACGTTGAACCTGTTTGCTTGGCAGTGGGGAAACAGTCTAT
GCCAAGGCGCCATGTTGCCACTACCAGTGCCTATCAAGGTAAGGCAACCCCAGGGCCAAC
GATATGGTTTCAATTGATACTTCAGATTTCTTCCTCAGCTGATACTGTAATTTTCCATGT
GCAAACAGGTGGACAAGGTGGAGGGTGGGATCAGGCTAGGGTTCATTGGGATCGACGACG
GCGCGACCTCGCTGCTGGCCTACATCGACTGCTTGGTGTCTCCAGCGACCGACGGCTCCG
GGTTTGTGTTCCGAGCAACCAGGAACGGTGCTATGAAGGACATGGAGCCGCCTGGGGAGC
CCAGGATCATGAGGAGCCTCCTCATGGCGCTTCAGAAGTCCATCCAGATTGCGCAAGTTT
GACAAGCCTCTTCAGATTGTGCAAATTTGACAAGTCTGCTAAACAGTAATTAAGGAAATT
GATGAAGCAGGATTGCTGTTCTCTGTTGATACGACTTGTAAACCCTCTACTTTTCAAGGT
TTCCTTTCATGTTCTCTTACAAAATAAAGATACAAATTCCATTAGAGGAAGTATATAAAA
GCTAAACTCCATTGTCCACTATTTTTCCTCTTTATTCATATTCATACTTCCCCAAGGACT
TCAATAGTTAGACTAATTGGTCGAAAATTTGAGTTACAGAGTACACACTCACACGGTAAA
GAAAAGATGTCAATATAACAACCGGAGCATTGTCAACCATCACTTTTCAAGTATACATGA
ACCACTGTCAAATTGGGCTGGAAAAAATCAGCCTAAAACTCAAAGGGCCAACCACTATTT
CAACACAACGGGTAAACACAGTTTCGATTATGAAGCGGAACAGGCTTCTAGCTTTGGGAG
GACGCTGCGCCACGCATCAGCGATGTCTTTAGCTAACTTTGCTTGACCTTTCGCAAACTC
ATGGAATGCAAGTCCAATATCAGCTGTTTTCTGCTCTTGGAATCGTGCAAGCTCGTCGTT
CATTACACTAACTATGTGCTCGTACCTCTTCGTAGCCTCCTCACTGGCTGCTTTCAACTG
CATTTATTCACAACAAAACACCGGTCAAACAAATCATTCATTCACAATTTCTGCTTGCTC
GACATAGTTCCATAAAATTAATAATACTTACCTCACTGAACTCAGTTTCTGACTCGGAAA
ACTTCTCAGGGTTCATGAACTTCATTTTTTCACTGCAGTAAGAATAGGATGAGAAATTTT
CCAGGTAATAGTACAGAATAAACTTCTCAGGGTTCATGAACTTCATTTTTTTCACTTCAG
TAAGAATAGGATCGACACTACAAGGACCTTACACTCTGTGTTGTGCTAACAGATTAGAGG
TTTTATTATTTTATACTGTGAAAAATTTAAATTGGTAGGCCCAGTTTTGATTAGTTATTA
TCCTGAAAGGTGAAATAACTCCCTTAGGACATTTTCCCTAAATTATTACACCATGTCACT
GAGAACGAAATATGGAACTTGCAATATGCGATACATACAGGTTAAGCTCTTTATACTTCC
TCTCCTGGTCCAAGTCAAAGTGCTGCCTGAAAGCATTGGCTCGATCAAGCATAGTGGCCT
GCCATGACCATGAGAAAATTAGTCATGACCTCAATTTGCTTTGACATTTCTTCAACATTA
TAAGAAATTCTCTATTTTGCTGTTAATAGATGGAAGAGAAAGAAAACTCACCTTTATTGA
CTGCACAGCACGCACATAATCTTTCAAAGGTTCTTCAAAATTAAAGAGAAGGTTATCTGC
CTGTAGTAACAGCATATCGACAGCATTAGGTAATAGAAGTACTAACTACTAAATGAATGG
TCATATGGTATTTATAATGAAGTAGTACTATCCTAACAGGTTATTGATTACCTCTCTTTG
CAGCTTTATTGACAACATTTCTGACTTCGAACCAACTTCGGAAAACACCTTCTCCAACGA
ATCCCCTTCGCAGGCGCCTAAAAGCTTAATCGCTTTCCCAAAGTCCGCCAAAGATTGCCC
AAGTTCTAATGAAAGAAAATCAGAATGGTGTAATTGGTCTTGCAATCCAGTTAAACACTC
ATAACCAACAGCAAGTTGAGATACTGTTAATGGCCTCCGAACCACAGCCTTGTGCTCATT
ATGATACCATGTAGCAGGTCATCTATTTCTATCTTTTGGAAGACCAAATTTTTAACAACC
ATAACATTTTACTGCTATTTTACATCGGGACTGAACTCAAGAAAGTTTTTTTAGGATCAA
GATATCTACCTCTGTGCCTTTTTACAAGGCGAAATGCTTGTTTCTGGGCCTCTGCTAGAT
GATTTTCTAGCTCAAATATGTAATGTTTAAGCTTCTCATATTCAGGAGAAGACTCTTCCA
CTGGCTTTTCTTTTCCCAGAACAACATCACTGACTTTTGACTGTACATCCTACAGAAATG
ATTACCAACTGTTAACCAGTAACTGCAGTTTCAATATTAAGAAAGGAGGGGGGTGGGGGT
CTAATATCAAGGACGTCTTACTGAGCAATGAAGGAACCATACCTTAAACATTTGTATGAA
ATCTCCGGGCTTCTTAAATATACCAGTCTCATAAGACCTTGCTCTATCCATTTTCTGTTT
CATGCACGTGAAGAACAAAACAATAACTTGAGCTGAAAGAATGCCATCACCGACTGGAGT
TTCTGGCCGACTCTTATTAATTATGCAGTGAAATTACTCTTATATTATTTAGTTCCTTGA
AAATTTGAGTGCAATAGCAATAATGATCAAATCACTGGAGGACGAAATATATGCCGGTCG
GACCAAGAGTTACTTGATTATTAACAGGTACCTAAGTGAACAATATGATAAGACTACAGT
AATACATGCAACTTACAATTCGTATATGTCAAAAGTATCTATAACATAGCTGTGAAGAAT
CAAAAAACTTGGCGAACATTAAATGACTATATAGATTAAAAGTTATCAATTAATTGCAAA
ACTCAGCTTATGCAAATACTTCACCTCTTCATCTGCCTGCAAAAATGTCCTCAAATCTTC
GCTTTGCTTAAGTTCCGGGTGTGAAGCTAGTCTGTTGATGAATAGGTCCAGAGCTTGGCG
CCTCAATTCAATGAATTCTTTGCTAAACCGGAATTTCTCTAAGAATAGAGCAAAGAAACA
ACAGCTCCGTAAGCAATAAAACACAATAGGCACTACAGTGGTCACTACATTTATGTTACT
CTGCAAGGAATATATGAGATAGATTGTTGATAAAATTACAATTTGTCATATTACCAACAG
CATTCTTCTCTGGAAGAGGAGGTATAAAAATGCCTTTGTACTTCTCAGCTAGCCGATCGT
GCAGCCACTCAAAATCACTATAGCGCCTGATAACAATTTTTTCTGCTCCCTCGAATTCAG
GTAGGTTAGTCTACAGAGGTAAATATTAGCAAATTAGTAAATCAATAGAACACAGTCAGC
ATATAGCCAAAAAGGAATAAATATATATATATAAATATCTTCTAAAGAAGTAAATGTGGT
ACAGCTCCTAGATAGCATGCAAGCACAAGACAAATATGGAGAATGAAAAGTAAGACGAGT
GTTGGAGGTCAATTCAATAGGCTAAACAAATGGGTGTGAATAAATGATAGAACGGTACAA
AGTGTCGTCAATTGGCGGTTTACACAATTGCCATGTCATTCCGCGATCATCTTTGTTAGC
ATACGAACCAGTAGGATCCAGAGTGTAATGGTTCGGGTCACTACAATCTTACTGTGTTGC
TTGAATCAATTAGAAAACTCACCCGTATTTAGAGTGGGTTAAGTATACAGACAGATTTAG
TGATGAATTGGTGTGAGCAATGCAACAGAGGGTGCTTCCTCATGGAATTATTTAATTATG
GAACTAAAGTATCTCCCTTTTAAGCATTGTGTTCCTTTTTTTCCAAACCATGCAGGAGAG
CTACATATAAATATATTAAGAAAGGCTAGAAGTGCAGAACATAGTTGAAGGGTTACAGCT
AGATAGTCAAAACAACCACAAAAACAACCCAAAGGTGATCTAAGGCAGGAGGGCGGCCAA
TCCATCCATCAGAGCTGGCACTTGCCACTCGGCCCTAGAGCCCTAGAAAAAATGATAGAG
GCTGTGACTTCATTATTGAAGATTCTTTGTGTTCCTTCCATATAATCGACTCAATCAAGA
TGATATAAAAACTATTAGAACCTTCGCTGAAATCGGGCAGGGGGGCGGTAAACACAGCCT
GTTTTGTGCGATCTAAGGACACCGTGTCCTGATGTTCCATAGCTACTCAACGTTCAGAAC
TATTCAATGCCCTGCAGTTTTCTTTCATCATACCTAGCTCTACCAATTAGAGAAAATCTT
TTAAATGTTTTCAGGATCCTACCCAAAGGCCATAAGAGTGTGCACACCACTGAGTTCATT
AATTACTGGACTGTTACTAGTTTCCAATGCCGGATCTAAATTAAGAAACCAGGGTCCATA
AATTGAGCTCCGCCGTTCCAGCCTGACTGACACCTAATAGCGGGCGAAATTTGCTCTAGG
AACTGGCATCACCCGATGGACATAAGGAAAACCATCAATTCGAACAGTACCACACCAAAA
ACCACTGAATCCGGACCAAATCGAGGTAACCGACGGGCCCGGGACTTGGAACAGAGAGCG
AGCCGGATGACCTTGGTGATGACGCGGTAGGAGATGTAGGACTGGACGCCGGTGCCCATC
TTGACGGGATCCGTGACGCAGATCGACAGGAACGGCGCCCCGGCCGCCGCCCCGGGCGAC
CGCGGGCTCTGCGACAGGCTCCTCTCCTGCGAGAGAGCGCATGGATAG