morexGenes - Barley RNA-seq Database

Contig contig_1563201

Source Contig contig_1563201

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1563201 (2438 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1563201

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12401	1	833 bp	AK374396	Available	Available	None

CDS Structure of MLOC_12401

Contig Sequence (2438 bp)

>contig_1563201 2438 assembly3_WGSMorex_rbca.fasta
AGGCCTGCGCTGAATATGCCCAAACCATCTCGGACGATGTTAGACAAGCTTCTCTTCAAT
TGGCGCTACCTCAACTCTATCTCGTATATCATCATTCCGGATTCGGTCCTTCCTTGTGTG
GTCGCATATCCATCTCAACATGAGCATCTCCGCCACACCTTGCTGTTAATATACAAACTA
ACACAAAATACAAATTATTTTCCTGAACGGAATGACTCTTACCATTTACATCACTCTCCA
AGCAATACTAATGCACTTTTTATTTTGAGTATACAGATAATGATGTACTATTAGAATATT
AGGGCATTTTTTTCAATCCAAATTCAGTCAGGGAAAATAATTATTTGCATATATTTTCAT
TTTGTGCAGACTATTGCTATCATCAGTGCAATTGCATACTTTCTAGACAGGGACGGAAGT
TTCCGGAATAGTTTCAGTGATGGTTGGGATCGTATCTTGTCAAAGCATCCAATACCGTTC
TACTACTGCATAGGTATTGGAATAACACCTTCTGTTATAATGGTGCATATGTACCATTTA
TATTAGTGAGCAAAACTTTTGGTTGTTACAGCAACATAAAACTGCTGTTACTGAATTACC
TAACGTGTCATGTGTTGATGTTCAAGGGGTTGTGGTTTTCTTTGTGCTGCTTGGATTTTT
CGGGTTGATTGTGCACTGCTCGTCCTTGAACGACAACCAAGATCCGTGCCTAGCTGGGTG
CCGGAACTGCTGCTATGGTTGGGGCATCCTGGACTGTCTCCCTGCTTCTTTGGAGGCTTG
CTTTGCCCTGGTGGTGCTCTTCATCGTCGTGTTCGCTATCCTTGGGATTGCATATGGTTT
CCTTGCGGCAACTATGGCCGTCCAGAGGATCTGGCAGAGGCATTATCACATCCTGACCAA
AAGAGAACTCACAAAGGCAAGAGGCGCCCTCACATTGGTTGAGCTATTTCCCCAGGGCAG
TATTATTCTTTCAGATTATGAATTCGGTTTGATACTTTTTCTCATGCAGGAATACGTAGT
GGAAGATCTGCACGGCAGCTACTCGGCCCCGAAGCTTGAGCCCGAGCACGAGGAGCGACT
AAAAATGCTGAAGCTACTATAGATGGCCCATCCGCATCAAAACACTGTAAATCCCGCCTG
TATTGCTGTGTGCCGAAACAGGTGTGTACGCCTTGTCGGTAATGTTGTTGAGTTAGATAT
TCTATGAAACATAGTGCTGACACCATTCGAAACTTATGGCTTTCTGAATCGAAATCCTGC
AGTCCCCTAATTTTTTTTAACACATGAATAAATTTGCTGCATGCATCTGATTCTGATGTA
GCACCTCAGTCCCAAAATATAAATATAAGACGTTTTTGTAATTTTAAACTGCAAAAACGT
CTTATATTTTAGGAAGGAGGTAGTAGTTTTGTTATTCCACCACTTTGATGTGTGCATACA
TCACTTTTATGCTCCATGCATGCTTCATGTAACAGAATTGACTAGCTTAGCAGTTAGCCT
CCGCCGATAGATATCTGATAGCCGTGGTCGATATTAAGTCGGGGTGCCGGTGTCGAGGTA
ACCGCCATGGAGTCCGGAGTCGCCCCGAGAGGCTCCCACAGCAAGCCACGGATGGCAAGA
GCCTCTCTTCGCCCTCGACGAGCCTAGGAAGGCGGGTACTCCACCATCCTTTATAGGAGT
ATAATAAGGTTGAACTCTGATTCCTCTTTGAATAAGGGAAGATGCTCTTCCAATGAGTTT
TGGATCCCTTTATGTTTACTTTCATTATTCTGGCTGAAAAATGAATGAGATGATGATCTA
TATATAAGTAGTAGGGCATAACCATCATTGCGATGATCATAAATCTTTCACATAATGGTA
TTAGTTAATTAGAGGAGGAACACAATTGTATGAGCTAGGTCCTTAGAATGTTCAACTCAA
AGAAGCAATTCAAATGTAATCAAGTAGATAAATTAGAGCAAGTGGTGTCGGGACCTTGAT
CCTAGGTCACACATATATAGCATGTAACACATCATATCACTTTGCGACTTCACACACGGT
ATCTTATGGCTGAAGCCATTTCTGGGTCGCTAGCATCCAGTATATGATTATGTCGCTAGT
ATCTTTGCGACTTCACTTTACGTTTGCGTCTTTTGGCTCATGTATATGATTATGTCGCTA
GCATCCAAATGAGAGAGGACCTGGGTCGACATGACTAGTTATAAAACAAAGTGACACAAA
TGTACGCGGGCATACATAGATAACCCAACAATGCACGCGTTGATCATGAGCGTGTGTAAC
TGTGGGGACCCGGACCTACGAGTCGTGATCACCGACAGAACATGCTTAGTGATCCCAAAG
ATCANNNNNNNNNNNNNNNNNNNAAACTGAATAACAAGAGTCTTACGTTCATACATACCG
TTTGATACAAATAACGACCATTGCGGTCAAGTCTTACA