morexGenes - Barley RNA-seq Database

Contig contig_1563069
Source Contig contig_1563069
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1563069 (10751 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1563069

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12331	1	466 bp	AK376189	Not available	Available	None
MLOC_12333	10	2852 bp	MLOC_12333.3	Available	Available	LOC_Os03g13850.1, FRAME:-1, EVALUE:0.0, 13103.m01611 protein cell cycle checkpoint protein RAD17, putative, expressed
MLOC_12330	1	277 bp	MLOC_12330.1	Available	Available	None
MLOC_12332	1	358 bp	AK371586	Not available	Available	None
CDS Structure of MLOC_12331

CDS Structure of MLOC_12333

CDS Structure of MLOC_12330

CDS Structure of MLOC_12332

Contig Sequence (10751 bp)

>contig_1563069 10751 assembly3_WGSMorex_rbca.fasta
GGCCGCTGCTGTCCTCCCAGAACATGCCCCCCGCCGCCGCCGCCGTCCCGGACCCCGGCA
CGGCCGCTCCCTCGACGAGACGGTCCGGGGGGCTAGATCACGAGAGCGGTGGGCGGGCGC
GATTCGAACCGCCGGGCAGTAGGCGGCGGAGACGGAGGAAATCTCAGGCAAGGAGGGCTG
GAGCACCAGCCGCGAAGGAGCATTCCAGTTTACAGGGGATTGGAGAGGATCGCGGCGGGT
GCGTTTGGCGTGTCGGTCGATGCTCTGCCCTTCCCTTCCCTTCCTTTTATCGGTTGGCGG
ATTGTGATGGTGATGTGAATTTTCGGCTCTTTGGTTTGTTTGATCCAAGGTGACTACGAG
TACGCACTTTACGCGCAGGATTGACCTTCCATTAAAGAATGCACCATTGGATCCTCTTGG
CCGTGTAGCACATGACGCTGTTAAGTAAGTCAACATCTGAGATCTCCTGCAAGTCAGATT
GGGAACATCTCATCTCATACTGGGGCGCATGATCGGTACTACTCCGTACCAAACGCAGTT
TAAATTGAACTGAAAAGGCGGGATTTTTCTTTCTTTTCACGGGAATCTATAGCACGAGAG
TTGCTGCGCGTCTCGGCCAAAGGCGCACTGATGGATGTTAGGCTCGCCTGCATCACACAC
ACACGCGCTCGCGCGCGCACACACACACCACACGCACGTGTAGCGCGCAACTTACTGTAC
TGACTGATGAAATGGAAGCAAGCCGAGCAGTAGTACGCAGTTGGACTGCCAAGGAACAAC
GAAGATGGCCAAAAACGCATGACCCAACCAACCACCCAGGTGAGGTCATCCTGACGATTT
ACATGTTACTTATATACTCCCTCCGTTCCTAAATATAAGTCGTAGAAATTTCACTAGTGG
ACTACATACGAATGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGCTCCGTA
TGTAGACACATAGTAAAATCGGTTAAAAGACTTATATTTAGGAACGAAGGGAGTAGTTCC
CAAAGATTCCTACCAAAGACCCTCAAAAGAAAATTCATCTCTACCAAACTAGATTACATC
TGATATGAGCTAGATCAGCATGGTCTTTACTTTTACCATTCTTCTATCTCATCTTCATCC
TCTTCACAGTTATTCCCTTCAGCGTCGAGCATATCAATCGAGTTCGGGCCACCTGCGACA
TCGTGGTGCAAGGAGTTGCTTCTGGCCATATCATTGTGGGGGCTTATCCATCTCCCGAAA
GGCCTGAAGTCAGTGACCACGTCGGAGAAGTTGCGCGAACCAGACGAGCTAGACGGATCA
AATCTTTCTTTAAGAATCAGACCCTGCGTTGTTGTTCCCAACAAAACGAAATTACGGATC
ATCGGACAACTCCAAAGAAAAAAAAATCAGACAAACATGAATAGACTGAAAATGGAAGAC
TAATCAGCGCCACACTGATCTAAGTACAGCTAAGAACTTTCATCGGCACGGTTCAGCATT
AAAGTAAAGTAAGATTTATGTGTTCAAATGTTGGGCACATGAATGTCTCCAGAGCCTAGA
AAGAAATTCTGTACATATATATTGACTTCAAAAGGAGGAAAAGGTGATACCGGTGTGTTT
ACTTTATTACAGAAGACAACATGCACAAGATGCATACACAACTCATTTTTCAAGATCTAG
TTTAATGCATGAAAGGTGACATGGTGTCAGATTACCTTCGTGGATCGAAAAGTACGCTCA
ATTTGCCAGACCTTCGGGCTGCGTATTGTATGCCATCTGCTTAGGCCAAATCAAAGAAGA
AGAAAATTAGCCCAGGATCCTTAAAAGAATCATCATATTGATAAGCAGGTACCTTGAGGG
TGAGGCATGTGCATTTCCAAAAAGAACTCCTCGTGCTGCAACAGAGGCAGCAATAAGTTG
TGACATGTTTTCCAACTCGTTTGATTCGTTTACAATCCAACGAGCCGATGCGATTGGACT
GCCAGCAAGAAGGCAGTCTGCCTCACTCAAATATGACATCACAACCCATGCATCATCAAC
AGCATCATCGTCGATGAAATCAACAACTGTAAAACATCAATTACCAATTCATTTAAATAA
ATAAATAAAATAGTGAGAACGAATTGTCAATGGCTGAGCACACTATTTTCTAGAGGGAAG
CTAAAGTCAAGGTACAAAACTAGAATTTAGTCTTATTAGAATATACCAATTAAATGGCTC
ATGGATCCATGTCCATATGTGACCAGCAGTGGTGCATGACAGAAGTAAACATAAAGGCAG
CATGTTTAGTTAAAGCAGCAACTTGTCTATAGCGCACTACATCCACATGATTACTTTTGG
TAGTTCTAGAATCACTGTTTCACAAATGAGCATGAGATCAACTGACAGCTGTGAGTCTCT
GACAAGCATAAATGTGCAGTGTACAGTATACTGCTCGAAACTGGGTTGATGTAAAAACTA
TGATAAAACTACAGCTTTAAGAACCAATTTCCCAGAAGTAGATATTTAGGGGTCGACTGT
ATCTCAAAAGCTTAAGATGCTTTGGGGTCCACCTATATCGCCACCGGGTCTGGCCATCTG
GGTCCATTGTTGCTCACAAATTCTTGATCATTTCCATGCTGAAAATTGCTATGTTGGATC
CAAGGTCAAGCGGTTTGGCTTGCTAGATGGAACCAGTCCAGGATTAGTGAGCATGACGTG
CGGGGTTTGGGCAGGAATTTAGGTGCACCCGATAACCTAGTTTTGCGATAGTATTGATCC
CTAAATTTGCAGTTTTGTGAAAATTATCCTTATCTCTGCAGGTTTATGATTTTTGCCCGG
TATTTTCACAAAATTTACTCCACAATACATGACGCTGCCTGACATGTACAATCAAGTAAA
CTCATGATGTTGCCCGCCATGTACAATCAAGTAAACTCATAGTCAAGAGCAAGCATAAGA
TGAAAAGAACAAATTCAAACTCAGCACGTAGTACATAATGCTCCTTATATAAGTAGTGCT
CTCTACTGTTTACCATTTTCATGTAGAAAGTCAGCAACAGTCCGTACTTTTCCGTGTGCT
TGAGAAAGAATCATCTCTGGAACATCCATTTTTAGTGGATTTCTTCTTAGCTGTTCTCTC
AGAGAAAATGAATCCAGATCTACAGCACCAATATGACAAAGGTTCAGAGACCAAAAGCTA
ACTTCTATATAAATGATGAACACCGCTCTCCCAAAAATGCTGAAAAACGCAACCTTCCAT
CCCATATTCCAGTTTAAAACTTGTTAATCCAGACAAAAGGTACAAGACTGGTCGTGTGTA
GCCAGTAACCACGGTTCATTGATAGAAAATGTGGAATTCAAGACATGGAAATCAAGCAAG
TATTAAACAAAGTAAATTAGGGAAATGAAGGTAATATAAATCAAGCACAAAATCCAACCA
TGATAAATGCTGCAAGAACATACAGGAATGGCCAAACGAACAAAATATTCTACAAGAAAC
AATAAAGGTACACCACTATGGAACTTGTATGTTAAAGTTAGATCAGATAGACTGAAAAGG
ATGTGTGGTCATTGTTCAATAAACGACTGTATAGGGACAAAAGAAACTAGCATAGAAAAT
GAAGTACCATATACTCCCTCCGTTTCAGTATAAGGTGCACATGCTTTTCGAGATTTAAGT
TTGACCACAAATTTAACCAATGAAATGTGTGTTATGTGTCACAAAAATTATACAATTGAA
TTCGCATTTGAAAGAATTTTTCAATCGTATAGTTTTTCGGTCACACGATTTATGTATTAC
TGACCTAACTGATGGTCAAAGTTACATTTTGAAAAGCATGTGCACCTTATATTCCGGAAT
TCTATCTAGTTCAAATAAGTCAATTAGATAAATGTTCCAAGAAATAACCTTCAGAAAAGT
AAAGAATATATAGACATTTCAATTTAAATTGATATGTGGTGTTTTAATTAACCACACTGC
GCAACGAAGATCTGTTTGAAAATGCACCAAACTCAAGAAGAGAATTGTACAGAAGATGGT
ATAATAATTACATACCGACATTGACATCACCATGTGTTTCCCTTTTATTGTGCAAAAACT
TCCCTAATGCATGAAATAATGTAAGCGTCTCATCCCTTCCGCATGGAGAATTAACTACAG
AGCTGGGGCCATAACAGTCCTGTGCTGGAGCTAGAGTAGCATAACCCTTTAAATCCGACA
GAGCAGCACTTGTTACCAATGCAGAATCTAGCCTTCTTGGATTAAGACAATAGTATTGAA
GAGACATTATCGCATGTCTGATATCACCTCCACAAGATGTAGCGATTTGATGCACCAATT
CTTCAGTTGTGCCAGAGCTTTCTTGTTTGCATATTCTAAGAAGGATTTTCTTGATAGAAC
TTATGGTTACCGGATTGAAAGCAATCTGCATAGATATTATTGGTGCACTATGAGAGACAT
GCACCGTAGTTCAAAAACTTGTTACCATTATGATAATAAAAGCTGCCAAACAAAATCTGC
AGTTATAGTTATACTAGGCAAGTGTACCTTATGAGCACCAGCACCTTGAAGCAAGGACTC
AAGTTCCTCGGAATTCCATGTCGCAGTATCATTAGCCTCATTTTTGTGATGGTGAGTAAG
TGAAATGACAGTTGGTATTTGAGTACTTTGAACTAGTCCTGTTAAACATTTCCCCAATCT
TGCAAATGAAGCTTTTCCACTTGTTACAGGGATGTCATCAATCAGAATGATGACTAGCTT
TCTTTGGGATCCAATGCTGGTTGGAGAAAGCAACGAGTATTTTCTTATCTTGTTCACAAA
ATTTTCAAATTCTTCCAACTTGGATACATACTCAAGTTCTTTCAAATGGTCATTGAAAAA
GAAAAGGAATAATCAATTAATAAAAGGCACTTGTGAGTCATAAATGGAAAGCTCATTACA
TAATACGTACTAGACTACTACTCCCACCGTTCACAAATATAAGATGTTTTGGATATTTCA
ATATAGACTATATACGGACTGAAATGAGTGAACAAACACATTAAAACATGTCTATATACA
TCCGATTCACAAAAAAGTTAGAACATCTTATCTTTGTGAACAGGGGGAGTAATAAGTACT
AAATCATGAATACAATATAAGTGCATGGATTTTGACCATACTTTTATCAGAACATTATCT
TGCAGATGATTTGCAGACTAAGGGAGAAAGTTTAGACCTCAAAGATAGGTTACCTGAATT
AGCATGCACAAGCTCAGCCCATAGTGTTGGTACTGGGGTTGTCCACTCACATAAGTCAGC
TCCTATCTCAGCAGCAATCGCTTTCACAGTTGCCTGTGGTAAGCAACAAGCAGTAAATTA
TCACTTATCAGTTAATACTTCAACAAACCAAAATACTGATGATTAATTACTGTATTCTTC
TCTTAGCTTAAGCATTGAGAAGTAACACCCATCTTGGCAAATGAGGAGATGCAAAAGAAC
AACCACAAACAAAAGAAAAGAAAACAGTAGGGAGTAGAGACAGTTGGAGGACGCATTTGT
GTCGACTAAAAGCCGCCACTAGCATACATGATATTATTTCTTTTCTTTAGAGAAAAGGGG
GTGCTGCACCGTGGTTCTGTTATCAATATTATTTCGAGTTGGGTGTGAATTCAGGGTTTT
TTTTTGTAAAAAACAAAATGTCTACCCCTGTATTTGATCTGCTATCACCAAAAGTGGGTG
GTATCTCAAGTTGGGTGTGTGTTCTCGTTTTTGTGTTTACAACAACAAAAAACTTCTAAC
CCTGTATTTTATCCGCTACTACCGAAAATGGGTTGGATTTTCAACAGGTCAAATAGAACC
GGGTTCATGATGTGCCATATCATGTCACTAAGGATCAAAATGTTACCCCAACTGATTTGT
ACAATTTATGACATGATGTTGACTATTTATGGTTCCCCAAAATGAATATGAAATACTGTG
AGAATACTAGCATGAGGAAAGGACGTACAGATTTTCCAATACCAGCTTGACCAGTAAGGA
CAAGACTCCGTCCTCCAAATGTTCCCTGCAAATTTTGCATATGCACTGTCAATATTTCTC
TATTATGAAAAATAGTAGAACATAAAAATAAGAAACGGTAACTAACAAGCCTAGAAGTTC
AATGTGCAAGATATATTTGGTGAAGTTGAACTTTAATCCCTTTCTCACCATCACGGGCAA
CACTAGACTGGTTCGAAATGTGTCAAGTTGAAAAGGTTCCTACAAGTAGGTTTGAAAATA
CGGGGGTATATAGGGCATACTAGCATCTTGAGGTGTACTATGCACTAGACCTCCAGTTTA
AACTTCAAAAAGCATTTACAAAATCTAAAAGAAATTAACAGCATGTATATATCATTTCAT
AAATTTTTAGGATTCAAATTCAACATACAACTCAGGAAACAAAAAGGACAAATTGGTCAG
TGAATAGCGCCACAAGGATATGTCGATGCTAGATGTGAATTGGTACGGTTAATAGCGTCA
TTCGTCCTTTTTGTTAATGATGAAGTTGTGAACCGAGTTTGGATATATGTGTAATTGCGT
ATTATCTTTATGCCAATAGTTAATGTCAGAATTTTTCACGACTTTTAGGTGTATTTTGGC
CTACTAGTGCACTGGTACACCTCAAGGATGCAAGTGCATTCTACATGCCCCTGGAAAATA
CTCACCAGTATCGGTTCTAGACTTGTAGGTACTGATAAAAGCAATGAATACCAATTTGGG
AACTGGGAGTGAAAATAACAGAAGAATAGTCCCATCTGATTTGCAGTAGCTTATATTGTG
ATTACCCTAACCCATCTCATAGGGTTAATATATCTTGACCTTGGTGAATATGCAGATTAT
CCAGAACACATTCCACTAAGTTGAATTATTATTATTGCCTATTCAGTGCATTCAAAGAAC
AATCACCTTTGGTGCCTTCAGCTTTTCTTCCAACCAGTTCTTTACATCTTCAACCTACAA
GGAGACAGATGAATATTACGCTATAGAAAAAAAACTCCTGCTCATTTTATAGAACTACAG
TTTAATGTACAGATTATCATAAAACTGGTTTTTTAGGGTAAAATTCACATAATCACATGT
GTAGGGCATTTTGAATCAAATAGCTATAGGATAAACCATGCGCCAAACTTTCCCATCTGG
CCTGACCACACAGGGGGCATCATGCGGCCTCTCGGTAGCGATGCACGAGAAAAACTTCTG
GACAACTAACCCCAGACATACTCCTGCTGCCGGCATGGTAAAATTTTAAGCAATATCTTC
ACTGAGCCGCCCATACCATATCCAAAGCAGCATATGCGACAATCTCTAACACCAAAATTG
AGCAATGTCTTCACTGCATTGATTGTCCAGAAAATTTCTGGCCACATAACACAGGTACAC
TGCAGCTGAAAGGAATCATAATGAGGCCGGGCAGTTAAACCTATAACGATTATATTGAAT
ATCCAAAAGTCTGTACTCCGGTGAAATTGGTCCTTAAATCTGTAGGTGTGTTATAAGGAC
AAGACTTTAGTCCTCGCTAGGATTGTCCAGAAAATTTTCTGGCCACATACACAGGTACGT
TAAATCTGTACTTACGCAAAAATTACTCTATCGCAATGATTGAGAACCACTGTACTGGTC
TATGAGTCAATACGAGGGTCTCAACTCAACTGGTTGGACAAGTGAGTGATTAGTCGACTG
GTCAAGGGTAACGTTGTCGGACTCACTGTGCAGCCCATTATCAGATTGAGCTCACATCAG
ATCAAGCCCATTCTGAAGGAGATACATCTCCTAGCGAGGCCACGGAACAACCCTACCTCC
CTGTCTTCCTCAGGTCAAGCCGCTGCCCGCTGTAGGGGCAATTGAAGGTTGTCGCCACCA
CCAAGCTCAGGCCTCAGATAAGTGAATCCCATCCTCTCCTTCCTACTGCTCTGCTCTGTG
CTCCTATCCTGCCTCTTGCGCCTCGCTGTGTCGGTATTATCTAGTGTGTGGCTGACTAGC
AAATAGTTAGATAATCTAGTGTGGGCAGCATGTACATGTGTTAGTTGTGTGGTTTATCTT
CTTATAAAGTTGTGATTAGCTTGTGAACTCTTATTCAGCAAGTAATTGTTTACATGTGCC
TCTGATAATCTGATAGCAAGATATTGTACTTCTGATTCAGCATGTAGCCATTTTAATTTT
GCCTCCCTCCTCCAAATTTTGTAGCGTAGTAGGGATCTACATGCACATGATTCTTTCACT
TGAAGAAAGATCCTTGCCAAGAACAAGAAATCTACTTGCCAGCTTCCTTTCATCCTAAAA
TCGGCCGATTGTACATTTGATTGTTTAAACGAAAGAAATTTGAAAAGAAATAAGAGCACA
ATAGGTTTATGACTGAACTGATAAACAGAAAGTTTTGGAATCCCTTCCTTCTCTTTACTT
CACAGAGCAGTAGATAGTTATCCCATTTATAGCAGGACTAGTGCAAGGCCAGTATTTGAC
TAATCCAGTAGCAGGACTAGTCACGGATAGTCTACGAGTGAGTACGACAGCAACTCAACT
TATAAACCTTGGTTTTATGCATGGCGAAACTTGACCATGAACAACTCCAATTCATACATC
AACACCCTCATGCAGTACAAAGGTTTTGAAAGCCAGGACGCTTAATGCAAAAATATATTT
ACAGATGGTGCAGTGCCTTAAGAAATTAAACCAAGCAGGTCCATCACAAAATGAATTAAA
ACCAATGATACAGACAACAAAAAGGTGACCAACCTTCTTTTTGTGAACAGCAAGCTCTGC
CAATGAGTGTGGTTTATACTTGTCAATCCAAAGCTCTTCCGTTTGACGCATAGACCCTGC
CTAGAAGTAGACTAATCAACATATTGAAAACTTACAAGAGTTACCATAGACAAATGTAGC
TTATGTAATAACTTAGCTACATTTTAGAAACGGCAAGAAAGAAAGGCACAAACATGTCAG
AAAACTCTGGAAGAAAAGTCTTGGTAATTTACAAATATGAAAGAGAGGAACTATTAACAT
TACCCAAGAATAGAAACCTATGTGGGCTATATAGTGTAAGTATCCAGATGGTTGATATTT
TATTATATGGCTGATTCTTGCATGTCATTGCGCGTGCTTGTCCATTTCGCAAAAGGCCAG
GAAACGTCAAGCCAGCAAAAAAAAGGGTAAAATTGTCTATTACCGTGGCTTAATGCATAA
CATTCATCCCAAAGTAACAGAACACTTTATTAACCAGGATTTATTTTCCTTGCAAGAGGA
TCCTGTGTGGGTTAAAAATATAGAACAAGTTCACTAAGCAGCAAATTTAATGGTCAAGTA
TGAAATCAAATTAAACATACGCTGCAAGTGATATGAATAACTAGCTTCCTTTCAAAGGAG
CCCCTTGAGCTGCTGAGTTATTCGAAGGCTGCTGGGCTCAATCAAACTGTATATTCTTCC
ATACATGAAGGTTTCCATATTGACACTATCATGTCTGATATAAAAGATCACTGACAGGTA
GATAAGCAACACAGCCTACTTGACAGCATCTCATTTTCCAAATGTTTTGTCAACGTATTA
TTTAGAACTGTGGCCATCATGAAATATGTACATGCTGGTGTAGGCAAGCATCATAGCTCC
AGTACTGCAAAGAACATCTAACTGAGATATGTCCAGTGTCCTAAAATCTATATAAAAAAA
AGGTTGCAACTTTAGGGAGTTTATCAAGTACGAAAGGATCCATGATTTAACTGAGGTGCG
CTGTACAAAACATAGTCAACTGAGCAGCTTAAACATAACACTATGTAAACTTTCCAGTAA
GTAGTGATGAAACAACCTTGTAATATATTGAACAATGAACAGAACCCCACTCAAATAGCA
ATGCATTTTGCATGCATGTTAGTTTTAACTGACGTCAGGCGGGGGAGCGGAGAACTAGGT
GTTTGTATCATATATGAACAAAAAATGGGAGTTGGCTAGGTAAAGTACCTGACACGCCCA
AGTCATTTAGACATTCCGAAAAATCTTCAGTTAGCATGTCGAATTCATCCTTTACAAGAC
AGGAGAACACGTCAACAAAACATTGAGCTATTTTAACAGGAGAGACATTTGCAGTCAGTC
AGCTTGTAGCTCTGGTTAAATCAGGATCAAATCTTCTTGTGAGTTTAAGATCACTAATCA
ATAATCATACAAGAGCGCAAGTTCAATCTCAAGTGGTTGTCACAGATAAGAAATATCTCT
ACATTTTAAAGTGGACTCTTGTCAGAAAACACGGTCACTTACTTTATTGCTACTGAAATG
AACATGAAAATGATATACAAGGGTTATTTTCTTTGGGGGTACATAACGGTGATCTAGTTT
TGAGCTAATGTTCGCATCCAGCTAATGCAGAACACAGGAATCATGAAACTTAACTATCAA
CAAATGCATCGACCCAAATTTGAGTTCAGAATCATGACCACTAAAAGTAACCATGGGTAC
CCAATCCGATAAGTCAGAATATATCACATTCCACTAAGATCAAACGGATCACAGTACTGG
CTACGCGCACCATACAGCATTTGTAACTGCAAGCAGAACTCTAACTCGAGTTTAGCACCT
TCAGGGAGCCGGACAGCGCGGCGTCCGAAGCACGCCGGCGCCCCCTTCCCCCGCTGCTCC
CGCGGCGCGGCTTCTTCCTCGAGCTGCTCGGCGCCCGCTTCGACGGCGGCGCCGTCGCGG
GGGGCTTTGTGCTGCGCGTCGGCGGGCCGCGGGCGGCCGCGCCGCCGCCCCCGCCCGCGC
CCTCCGCGGGG