Contig Data
morexGenes
Links



Map Locations of contig_1562928 (5441 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_1562928

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12276 1 456 bp MLOC_12276.1 Available Available None
MLOC_12275 7 1596 bp MLOC_12275.2 Available Available LOC_Os01g16146.1, FRAME:-2, EVALUE:7e-140, 13101.m01794 protein phenazine biosynthesis protein, putative, expressed





CDS Structure of MLOC_12276






CDS Structure of MLOC_12275






Contig Sequence (5441 bp)

>contig_1562928 5441 assembly3_WGSMorex_rbca.fasta
CCTCAAAAGCCTCTAGTATATATAGGAGGAAGGGAGGAGAGGAGGCAGCCTCGACCCTAA
AGGGTTCGGCCGAAGTGGAGAGGAGNNNNNNNNNNNNNNNNNNNNNCCTACTCCAAGTAG
GATTCCACTTGGGCTCCTCCTCGATGACCATCAATTAATGGCAACTCTCGGTCCTTCCTT
CCGAACTCTTATCCTATTCATTTATTTATTCTTGCAAATAGTACTGTATCAAAGATCATA
CTCCATACATGATTAGATGGTGGGTTGTCTTCAATAATTTGATTCCAAGCATACAAGTAT
AGATGGATGGCAATGGCTTGCTAGCTAGGCTAGGAGCGTGCCCATCCATCAAAGTAACAG
CATCTCCTTGAATTTGCACTTCTTTTTCCAAAACAGGAATTTGCCTCATCGATTAATTAA
ATAGAAGAAAAATGTTCGGTTAATTAATAGAAAGCCGGGTGGAACCGATACAAACATAGC
ACATACGGAGCACTCAAACAAAAGAAAATTGTTCTGTTAGTTAATGAAAAATCAGACGAA
AACGGATACAAACACAACACATATGGAGTACTCACAAACCATGAAACTCCCTGACAACAC
GATCACGAATTCACGATCGATCTGACAAACATACACAACCTGTAACAACCACAAACCCTC
ACACTTCTATATCGCAAAACAACCCCCAATGAGAACACCTCGGCAGAAGGCAACCAAATC
CTCCCTGAATTTGCACTTTCAGCAACAAGTCCTATGTACTACTACAAGAGATTCGATCTC
ATAATAACTATCTGCCACTACAGCAATTGTGTCGATGTATATTTTAAGCAACAATTCTGT
GAGGTTTAGCGGAATGCTAGGATAGAACTACGTGGGAAGAGGTTACTGGAAAATATTAGT
GGCCTTGCTCAGATCATACACTGCCGGAGTAGCCTTCAAATAACCACTGGAAGTTTTTAA
ACCAGCACAAAGCAGCATGCATATTACACCAGGAGTGTCCCGGCCATGACAGTAATAGTT
TCTCCTTGGATTTTCACTCTCCGATTTGCGTCATCCAGTTCCAGGTATAGCGTTCCACCC
CTTGGAGATGCCTGATGATGATGCATGGTCACATGAAGGAAAATTAACACGATGATTTAG
CGCTGATCAAGCGCATGTTGTAGCATTATTGTGAAATAAAATATAGGCCTGCAAACAGTT
CAAACGTCGAAGACATACTTGAAATGCCTTCAGTTTTTGCTTCCCAAGCTTTCTACCCCA
ATAGGGTCCCAATACACAGTGTATACTGCCAGTAACAGGGTCCTGCCAAAATACAGAGAT
CAGGGGTTACGAGTTATGAAAGATGAGGCTGCATTAGATGGACAACATCAGTATCCAATG
GACGCCCAAGATTAATTTAAATGAACAGGATTTTTCTATACAGGTTTTAAGTTTTAACTA
GTACGAATTGTGGCACTCTAAAATTGTAACTTGCAAGCATCGATTCCACAACAATAATTA
CAAGCATCCACTGAGTGGATAAAGTTTGTAACTATCTTAGATAATAACACTACCAATCTT
TAGCCTGTAAATCGATATTGTGAATATAGATACAATTCTAGCTAAACAGAAGTAACTCAT
GATGATACTAATTTGTCAAGGACAAGCACGGTTCAGATTTCAGAGCATGTTGAAAGTAGA
CAACACTACGGGACTACTCAAATCCAGAAGGGAAGATGTAACATGTGTGAGACGTGAGCA
CAATTAGGTGTTGGGACAGGCACTCTTGCTCTGATTTTCTTATACTTAGCTACTGCAGTA
CTAAAGAGAGAAAAAATAGATTGAAGGATGATTCCGCCGCCGCCCTCCCGAGTCCTCTCC
TAGCCAGAGTCGCCTCCGATCTGGCTGCTGAGTGCTGACGAGTTCTGGATTTCTCCACCA
ACGGTCTTCACGGATTGGCAAAGTGCTCCCAGACCTTCGATTTCGAGGGGATCCGGTCGG
ACGCATCCATAATCATCAGCTCGCGGGGCTTCAATGGGCGTGTTGGGAAGCTCTGCTATC
AATCGACAACATGGGACATGTCGAACCTCCGCTAAGATTGAAAGACCAGATGGTAACGAC
GGAGGTGGGATTCTGGACGCGATGAAGACATTGCTTCACGGACTGCCGTGTGGGTTTGGC
TGTGAGATTTTTCTTTTCCAATCCGCATAGCTTTGGTGGTGCTCTTTGAGTATTGAGTCG
AGATTTTTATGATGAAAATCTAAGGTTTGTCCTTTATTGATTATACGTGGCAATAGTTTC
GCTGAAAGCATTGTTTTGAAACTCAGACTTTCTTGAGGTGAAAACCCAAGATCTTCGATC
GGGTGACGACAACGCTTGTGCATTGTTTTCTTCTTGAAGGCGTTGCTTTTGAAGAAACTT
TTTTTTAGTTCGAATGTTGTTTTTGGTGGTGGTTAGAGCGTGTTGCTGCTACGAGTGATT
GATCACCGTGGCGAGGTCTTTTTTTTTGAATTTCACGCGGGGGCAAACGCCTAATTGTGC
AAGAGGGCAAACGCCCAGATGATTACAGGTGCACATGGCGAGGTCTTTTTTCTCCTTTTT
ATTTTCTTTTTTGGCTGTATGCATCCTTGATGTCTTCAAACATCTTGTTGGTGTAGATGC
TAGGTGTAATTGATATTTTCTCAATATTAATATACTTTTTTTATAAAAAAACTAAAGAGA
TAGGACTTTCAACACCCGGATGCCCCTACACCCTCTATGAACAGTTAATTTAAAGAAAAT
ATGAAAAAAAATCTGAAACTTTGGGGAATCAAAGATGATCAAACATTCAATGTTCTTGCA
AAATTTCAGACACAAATAACATTTGAGGAGACCTCATCTAAAAAAACAAAATCAGTGCTC
AAAGTTTATGTGTATTTTTTAGCAGTGATTTCGTTTTTGTTTGTGAGGGCTCCTCAATGT
TATTTTTGGCTGAAATTTTAAAGAACATCAAAAGTTTGATCATCTTTGATTCCCAAAGTT
CTGGAATTTTTTTTATTAGAATTTACTGTTCATGAGGTTCAAAGGGCACCCAGGAGCTGT
CACACCTTTTCCCTCCTTTTTCTACTCAAATGCCTTGGTATCTACTCAAATGCTCGATGT
CTTGGTAAGTTCAGAAATTATATAACTTTGGACTAAGAAAGGACATCACCTCATCCATCC
CAAATTTTGGGCAGAATAAACGTGTGAAGAAGTCATAACCAGATCCAGCAGGTGCCGGTC
CTGTAACCATGATACCGCCACAGGACAATTTTTTTATTTCATCGATGTTAGGAATTATGT
CGGCAACCTCTTTTGCTGAAGAAAGTTCCACCTGAAAGCCATGGAAGCTGTTTATTAGGC
AATTGATTTTTCGGAAGGAAAATTGACATAGTAGGAGAAACTAAGAGAATAGCTATCTAG
CTTAGGAGAATGACCATAGCAGCACCAACATGCTCCATCTTAAAATGGGGAGGTTTATTT
TCGAATGTAATGATGCAGGTAAAAACAGGGAGAGACATTACAATGAGATCACCGTCGGCC
GCCGATTTGTGAACACTGACCACTGATGCGCCGTTTAGGGTCTCCGGAATCGACGGCGTC
TCGTTGCAGCCCAGAAAATCAATCATGGGGAAATTCAGTTCAATAAACAGCTTCCCGTGG
GCGCCTGCGTCCCCTGGTGGAGGAACTTTCTCTGCAGTCAAGATACCGGACTTGGTCATG
AACTCGATTATGCCATGCTCCGGCAGAACGACCGTGAAGAGGAAGTGGGCGGAGGCCAAC
GTCGCGTGCCCACACAGGTCGACCTGAAAGCGACGACGCGTGCTCGGAGTCAATGCAGGC
CAGTGGTGGACTGGTTCTTCAGATCGGTCGATGCTGGTAGTAAAATGGGGATCCGAGATT
CTGGGAGGAGATGGCCGGAGGGCTATATGCTACCTCGGTGACGGGAGTGAACCATCGGAG
GTGGAAGAGCGGGGCGGCGCTGGCGGGCCGGGAGAAGTCGCGCACGAGGAAGGCGGTCTC
CGAGAGGTTGAACTCGGTGGCGACGGACTGCATCCACCGCTCGTCCGCGGCGTTGTCGTC
CTCGAGGAGGCACACCGCGGCGGGGTTGCCCTTGAACGGCTCGGTCGCGAAGGCGTCCAC
CTGCGACAAGACCACGACGGCCGGGCCAACGTCACTTTCCGACAGGTGCGACCGTGCGAG
TGAAGAGGAGAGGGGAGGATAGTAGCACTGACCACGGCGTATCGGATGGCTTTCCTGCCC
ATTTCTGCGAACACGGCGTCGGTGTCCGCGGACGCTGCTCCAAAATTTGGTGAGCAGGAG
TTTAACAAGCTGCTGATGATTGGTGAGTAGTAATCAGCAATGGCGAGTTGACGAGATGGA
GACGATGGGCTTTCCTTCCTTGTGAACGACAGGGTACCAAACACCGGTTCACTAACTTCT
CTTTTCTTTAATCGACGGGGCAGAGAACTCCTGAATATATTGCTCAAAAGCCACCTCTTA
GGCTTGGCTGATCCAGCTTACGAACAAAACCGGATCAAAAACCTAAACAAGCTCGTTTGT
TTATAAGGAAAACCAGATAAAAACAGTCCAAATAGCAAGGCTAAAAAAAGAGAAAAAAGG
ACGTCCAAAACAAGACACGCCTAGCTAGCACACACGTCGCCAACGCCATGAAAAACAAGT
AGATGTAAGGTGTTGTCAAGGGATCATAATACTAGAACTTTGTAAGGAACCTAACGCACC
GCACTTGCGTCCGTACCGAGCCCCACGACACAACTTAGAAGCATCGACAATCAACGAGTG
CCATGAACACGAACCTTGACTCGGAGCTCCACCACAAAAAACACGGGACGATTAGCAAGT
TGGGAAGGCAACTTGTGCCATCAATGAGCAAAGATGAATCGAGACATCGCCAAGAGCATG
AAGATGGCCGCAACACATGGGCAACCATGGAAGAGTCTTTAGTATGCACAACAACAAAGA
CGAGACTACTTCACAAGGGGGAAACAAGTGGCTGTTCTGCGACACCAAAGGTACCGCCGC
CGAACCCCAAAGAACACCACCAAAGAGCCACCATCGACCCTAAGCGGCCGCACCACCACC
ACCAACATCTCCGCAGCGAGCAACACACGTGCAACAACCATGCAAACCCCGAGATGATGC
CTTCAAGAAAGGTTGCGACACTGGTTGCGCCGTCATCATCCGTACCAGGAAAACCTAGAC
TAGGGATTTCCCCCGGGAAACTGGCAAAAAGGGTAAAACAACATGACAACGATGTCTCCA
AGAAGATTAGCGGCGCCCACGGGTGTCGCCATCGCTAGCTCCAGATGGAGCAAGGCTTTT
GCCACAGTTGATCACACAACCTCTCGATGGGCCGATTGAATAACAAGGATTGTGTTGGGA
ATATTGCATGGGAAACAAAAAAAAAATCCTACGCACACGCA