morexGenes - Barley RNA-seq Database

Contig contig_1562893

Source Contig contig_1562893

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1562893 (4525 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1562893

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12254	1	356 bp	MLOC_12254.1	Available	Available	None
MLOC_12255	4	2307 bp	AK373338	Available	Available	None

CDS Structure of MLOC_12254

CDS Structure of MLOC_12255

Contig Sequence (4525 bp)

>contig_1562893 4525 assembly3_WGSMorex_rbca.fasta
TAGGGCATATTTCCAACAGTTATGCCGCGGCCCGTGTTGGGAAAAAACTTGTGTAGCCGC
TTGCTCAAACTGCGTACACACCATCTTGAACAACGGTTGATGCTCGAGTCGTTGTAGTGT
AGATCACATACGAAACAAGTTCGTATAACAAAAATGAACCTTTAGAGGAGGAGCATTTTT
GTCATTAAAAACCAAATCATTTCTACATAGGCAAAGCGATCAAAGTAAAGCATACACTCC
CATCCTTATTAGCGTTTTGAACCTATTTGGAATACCGTCCAACCAGCGACCATATATATG
GCAACACTTTTGGGTGGATACATATTTGACGCTATTTGGATGATTGACCATGTAGAACAT
ACAAATTTGGATTGAAGAAAGAAGGTGTTTGATTGTCTCGTCATGAGCACAAAAGAAACA
CTGCTTACTTCCTCGCGAGTTACGCCATGCTAGGTTGTTTTTGGTTAACACAACTCTCCT
ACGAAGATAGCACATGCAAGTTTTAACTTCTTGTGAAATTTTTGACTTCCAATTTTTTTG
TTAAACTCAATGGTACCTCAGAATGCGTGAGCGCATGGTACATATAGTCTATTGTGAAAG
ACCTCGATGTAGTAATGTTTCAGATCCCGTACTTGTGTCAGATTTATCGAATCGAGTTGG
GATAAAAAAATATGCCATGACATAAGTCGGGGGACAATCAAATCCATCTCGCACGAAATA
TTCGGATGGGATGAACTGAGCACCTGCACGATAGTATTATTCTTGTCGCGGGTAATGGTG
TACAAGGCTGGGTATTGTTCTCTGAAACTAGCATTACCTAGCCATATGTCTTCCTACAAT
TGAATCTTAGACCTGTTCTTTATCGCGAAAGACCTAAAGCGAAAGAGATGTTTCTTTGCA
GCCTTTAGGCCAACCCAAAAGTCTCTAGGTTTCCAATAGGCACAACACACCGCTTTTTGG
CCTAAGTACCTGTTGTGTAGCATGGTTTGTCAAACACCATCCTTAATAAATAAAAATGAA
CAATCATTTACTAAGTAATGCCCCATTCTCGACTTGCGGGTCATAAATTTCAAGGCCACC
TTGGTCTTTCATCCTACAAATCACACTCCATTAGATCAGCATGCATATTTTCTTTTCACC
GTCTCCGTGCCAAAAGAATTTGCATCTAAAATAGTTCGGTCTTTGCAAGAGTTTTTCTAG
GAGTTGACAAAAAAAAAGGATACAAAGAACCATACTTGAGAGGACAAAGTTAATCAAAAC
GAATCGTCCCCCAACTGAGAGCAGCTTGACTAACTTCCAATTGGGCAGGAAAATAGTCCT
GGCACCCTCCAATAGCGCCCCGCGATGGAGATGCCCTAAAAAGCTTAAGGGTACTTCATC
CAGCAAGTACTTACTATGCAATGGATGAACCATAGGGTGCGGATGTTATGTGTTTTGAAC
TTCTGGTTAAAAACAAACTCTAGAGAGATAATGCTAAAGAAGGCGATGAAAGGAAAAGGT
AAAGATCAGAGAGAGAATGGAGGGGAAGTTGCTTTTTATGCACAGCCCCAAGCAACAAGG
AGATTCGCATCAAGTCGGCGTGATTAGAACACCGGTCTCCCTGTCCTGCCTACTCTTTGC
AGCCTCCGTGAGCTGTCTGACAGCCACAAGGAGTAACAACTTTCAAGAGATGGGCACCAT
TGAGAGATGATCATGAGGTGCTGGGCCATGGAGCATGGTATTGGCAGGGAAGCAGGACAG
GTAGCGCTCGATCCAAACATTGATCACGCCTGCCTACTCCAACATGAAACGGCAGCAGGA
CTAGCACAACTGGATTAGCTTCTTCCTTTAACAAAAGGCAGGTTTAATGCCCCTCATCCA
GATAATAGCACCACTGATCTAGATATTCCTCATGATTGATCTCGCAAAAGATGAGGAAGC
AAAGCCACCAGCTGTGGATTCTGCTAGAGGACCTGTCATGTCACTTGAAAATTGAAATGA
AATAAAGATGCCAAAACCATAGACATTACTTCCTCAAGAGGATAAAAGCAGCATCCAGAT
CTTCTTGTAAACTGATTCAAGCTTTACACGAGAAGGCACAAGTTGGTGACACGTCATTTC
GACAAAAATTAACACGAGCACGCAAACAATCTACGCTGCACCGTGGCTGAAGCTACAAAC
AAGTAAAGCCAGCAAGCAGCAATAGAGAACATCACCGTAGCTCACATCTCCGAAAGAAGG
GGGACATATGCAAAGGAAAAGTGGTGCCTGACTGGTGTGAAGAACAAGGCACAAGAAAGA
GCAATTCACAACTCAACCCTTTGAAGGCTATGGCACATGCACCTCATTGTACTTTGTGTG
CTTGTACTTTGTCTCAGTTATATACAAATCACGAAGTGAAGTTATCAAGCAAGCAAGAAC
CTCTGGGCCATGGCACTGGTCGAAGAGGCAAACGGATGAAGCATAACGTCACAAGGTCCA
GCCTGATTTGCATCCCCAGCTGCTGGGGATGGAACATTGGCTTGTTCGTCCCAATAGATG
TTGGAGAGTAATAACCATGGTTGCAACATGACTTGTGTCACCAAACAAACAGATTCAAAT
GCCGCAGCCCCAGAACGAGATATGTTGCCCTAGTACCATACAGTTGTTGTGGTTAGTTGA
AGAAAAGGGAACCGACTTGCAGATTCTTCCAGTGCATCTATTGCTAATCTCAAACCATTT
ACATCCTGTGTGGTACAGCTTCTAACGATGATGGTAAGACTGTAAACCAGCCCATCCAAA
AGAATGCAATGGCTAGTGCCTAGTAACCTAACAAAACCGACCAAAACTCAAAAGAGAGCA
AAGCTTCCTGTATCTGATGATTCATCAACCTCTAGCTAATAACACTTCCAGATGCTTTCC
TTTACTGTCTTTTCTTGACCCTCCAGAAAGAGAACCATTGTCGGTTCTCCTATATTGGAC
TGCTGGTGTTTGTTTACCAGAGGCCAATTGGTGAAGCTGCAAGAATGTGAGCATACTTAC
TGCAAACACAGTAGCATTACCCAGCACACTACCCATCCTCTCGAATCTTAAAATGTTCTT
GGCTAAAGCAAAACTGCAGGATACCACACGCACCACCATATTTGAACCATGTCCCCTGCG
GTCCTCCTCATCTTCCCCTAATTGGCTGTGCATTCCATACACATCTTCCGGCGAGACAAA
ATGGCTCTTGTCACGCACATCACCCACGAAACCTAAGGCTTCCTCAATGATTCCATGCCC
CTTTCCTCTATGTTCAGCCAACCTTGCAGCAAGGAGAATGCGACTTTGCTGCACCCTAGC
AATCGCGGCATCTCGGTCGGCACGCTGTTGTAACTGAACATCCTGCAAGCCAACGTGACA
CAAATAAGCAACATATTGTTTTTCAATCAAGGGATATTTGGTGCCAGATGTCTAGCTACA
TCATCTGAATTATCAGTACATTTATGTTTGGCATAAATGATCATGGTGAAATGCCCCTTC
AAACAAAATCATGTAGGAGTGCTTAATTTCACAGATGCCGAGAGAAGATAGCTTATCTTG
ACACATGTAATTGCTCCTGCATAAAGCAGCATTATGTGCTCAGCTCATTCAGCTAAGACT
CGATCATGTACGGTAAGAAATTGTACATCGTATACCTTGGAATAAAATGAGGGACACTGC
GACAATTTTAACAATTAAGAGTTCCTGTTGATACCTTATACAAGAGGACAACCAGGAAGA
AGCTACATGGGTAACTACCATTAGCCAGAAGACAGTAAGCTACATGGCTAACAACCTGTA
GCAATTGTGTGACTTGGTACCATTATCGGCTACAAGGGAACGAGAGGTCCCAATTCAACA
GATAAGATTCTCCCGGTGTATGTTACACCTATGGAATGAAGACGCATGCCGACAGGAGTG
AATCTGGCACTCAAATCACATGAGGACAAAATTGACGAAGAATACAAAGGCTCGTGATAA
CGAAACATAACAGAGACAAACAAACAAAGCTAGCATCCAGCTCACAAATATGTGGCTTAA
TACCGTTGTTTTCCACATGGACATACTGTCAAACAAGGAGCATCTGTGGACCAAAACACA
GAACAGCACTAATGAATGACAAGGCCGGCCTAGTTTGCCTGAATGAGATGCGTGCTCAGA
ATTTAAACGACATGAACAATTGTTCATCTGAATCTGGATTTACGGATCAGCATGGTGGAG
TCATCTCAAAAGAAAACAAACTTAAAGGAGATGATTAATTGCGCAGGGGGGCAAGCAAAG
GCATGACAACAATCCACTGTATCATTTTTCTGAAGATGCTTCTCGCACGCGACATCAACG
AGGCACGGATTTTTCAACTCAGAGGAACGCAAGGAGGAGGAGGAGGGGGAGGTGAGGGAG
GGCTTGCACTCACACGAAGGAAGTGGAGGTGGCCCTCGAGGTCCTCGAGCGCGGCGCGGA
TGGCGTGCAGGCCCCGCGCGGCCGCCATGGGGGTGCCCGCCAACGGCCGGCAGGAAGGCC
GGGGGGGGGGGCACGGGGGGGGACG