morexGenes - Barley RNA-seq Database

Contig contig_1562861
Source Contig contig_1562861
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562861 (9874 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1562861

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12233	2	2402 bp	MLOC_12233.1	Available	Available	LOC_Os02g09930.1, FRAME:-2, EVALUE:0.0, 13102.m01095 protein CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
CDS Structure of MLOC_12233

Contig Sequence (9874 bp)

>contig_1562861 9874 assembly3_WGSMorex_rbca.fasta
CTCCTCCTCATAGTGATTGCGCCTTCGTGCGTCCGTGGTTTTCTCCCGCAAGGGTTTCCA
CGTAAAAATCCGTGTCTCTCGTGCCTCGTTGATCTCGTTTTATCTAACAGATGTTGGCTC
CATCAGCTCCTCGGTGAGCTCTGCGTGCCGTTGTCAAAAGCCACAATGGTGTACTGCGAC
AACATATCGTTCGCCTGCATGTCAGCCAACCGAGTGCACCATCGTCATATGAAGTACATT
GAGCTAGATATACACTTTGTACGCGGAAGGTCGGCTACGAGTCTTCCACGTTCCGACGAC
GCAACAAACCATCGTCATATGAAGTACATTGAGCTAGACATACACTTTGTACGCGGGAGG
TCGGCTACGAGTCCTCCAGGTTTCGACGACGCAACAATTCTTCGACGTCATGACCAAGGG
GCTCCCCACTCCGGCGTTTCACGAGTTTCGTTTCAGCTTGTGCATCCGCCCTCCACACGC
TTACCTCCCACTAGCGCACAATCTCCACCCCGCGGCCTGAGCCCTGTTGTAAACCATATA
TATTGATGATCAATACAGCAGCAGCACTAAAGGTGCCTTCCATTCTCCTTCTCATCTACA
GTTTGGATGCGAGTTTGCTGGTAGGTTTGATGGGGATTTCTTCCACACACACAAAAAAGG
TTTGATGGGTATTTTTCTGGGGCATTGTCTTCTGCTTGAACAGGTGGTGCCTTTGTTGCT
GTCTCAAGAGATGGATGAGGTGTTGGCTGACACTAGCTGGGGGAACAAACGTTTGAAGGC
AGCACACCGAAAATCTGAACAATTCGATCTTGCACACACATGCCTGAACCTTTTTTTCTT
TCTTATACTATTAGTATTACATTCGACTTGGAAGCAGAGACATCCTGCTCCCCATAATCA
CGGCACGTACTTGCTACAAGCAAAAAGAGAACACCACAAATACACATGCAGTGACCTTAC
ACCGCACTTGGCTTTCTTTTACAATAGCACATTCAAGGGAATGCTGCAATACTATCAGTC
TCCAAAGAGGAAGGAAAACAGAGAGAAACCCCGAGAAGACTGCGTGATCTTTACTTTTAA
ACTGGCTATGCACGGCCAACTAATCTTTTGCTGATTTCTCAGGGAACTGTGAACTGCAGA
GCGCATGATCCCGACGTTCTTTCAGTTATGACGGTGGGACGATTGTGCCAACGTAGCCAA
CCCCGACGACGAAGAAAGCCATCGACTGGAAGAAAAGGTATATGAAGAAATTGTCCTTCC
CGAACGCGACATCGTACCATCCACATGAGAAGAGGAAGGCTCCCACGCCGAGCTCCGGAA
CGTTTAACCTGAAATTTTCCATCTCTGGAAATTAGTCACCGAAAGCCAGGAAAAAAAGAT
GACAAAATATGTCTTATTTGTTCAGTACCTCTCCCACATCCTCATGAATGACTTCCTGGC
TGATGCTTTGTTAGCGGATTTCATCTTCATGGCGCTGCCGAGCTTCTCCGTGACGACCCA
TTCATTCGCCCTGCCTGCCTCTAACAAGCCAATCAATGTGGCCTTGGTTCTATGCAGCGA
CATGACGTTTTCGAAGAGGATCCAGAAGAAAAGCAAGTGGAAAGACCTGCCAAGATTGGT
ACATTTTTGTCAGGTAAACACACAATTTGATCAGATGCTACTCATAATCAAACGATCATT
TCTTGCTGATTATATCTCTTTGCGAGCGTGAGTTGTTTACTGGCTATAATATAATTACCT
GGGAGTTCCAACAGAATTGAGGAGGGTGATGATGGTTGGAATGTAGACGCAACCCCACTT
TGGTATATGAACCTCAGGGACAAAGATGGTTGTCGGGATGATTATGCAGTAGAAGGTGAA
TGTCACAATGTGGGCGACGATCTTGCGCACCAAGAAGAAGTTGTAGATGACATGGAATTT
CTTCCAGATTGTCACTTTCTGCACAGATAGTTAGCAGCCGAGTTAGCAACGCAGTTAAGC
TGTTTGCCTTCAAAAAGAATTGGATTCGACTTGATGGTGCTGGGGCAGACCTTGTTTGTC
ACAATCTCCAACAGCATCTTCCTGAACAGGTTTGCCGGACCACAAGACCATCTGTGCTGC
TGAAACCGGAAGGCTTTGAAAGTGCTGGGGAGTTCACTCTTAACCTGAAAAGCACGGCAA
GATTTTGGTTACCACCAATTCTTTTACTACGAAATTCCTGTCTCAAAGATAGAATATAAA
AAAAATTGAGCAAAAAAAAAAAGATTGAAAATAAAATTAAGGACGCCAGATCCATGTGTG
CGCTGTGTTATCTGAATGAATCTAATGGCTTGCATGATTGATGAATGTACCTGAACATCG
CCGAGGTAGACAAACTTCCATCCCTTGAGGCTGGCCCGGATAGCCAGATCCATGTCCTCC
ACGGTGGTCCGGTCCTTCCAGCCCCCTGCTTCATTCACTGCAGAAATGCGCCACACACCG
GCGGTTCCTGGTAGAAGGAATAGATTTGTTAGATGGATGCCATGGATATAAATTACCATT
GTCGAGTAAAATCACAGGAAGAGCAGACTGTTGAGTCTCACCGTTGAAGCCGAAGAAGGC
GCAGACGGAGGAGCTCACTTCCTGCTCCACTTTGAAGTGGTAATCCAAGGACATCTCCTG
CATCCTCGTCATCAAGCATTCATCGGCGTTCACTGATCACCACCAAACAACAGCACGCTC
ATCAGCATCCCCAGTACGATTGTCACCACGGAAAAATCTACCGCTCAAAAGTCACTACCA
GCCACCAGGCCAACTTTTCACTGTTTACCCTTGACTTTTCACACTACAATAGTTACACTT
GCACAGTCGCCCGCCTTCTTTTTACTGTTACCGGCATCGAACACATTGAACATGCATCGT
TCCGTTTTGTGGTTGTGGGGGAATAATAATACTAACAGGTTGGTCTTGTTCGGTTACTTC
AGCCGTACGGTACAGTTGGACCGAACAGAGGACGTGGGCGCACTGCACTGACACGGTCGA
ATAAAAAGTAAATCTTGGAGGTTAGCCATAGGGAGCACTCGTAAATCTTGGAGCTTTATA
GGGCGGACCATGGCAGTCTTTGCAGACACATCACGGGATCACGGCACAATTCAAGCCGGG
TTGGGTTGGATTGGAGCGCTAACCTGGCCGCGCCCCACGGCTCCAAAGCCACAGCCAAAG
GTGAATCTAGGACGCGAGCTGGTGGCACCATGCAGTGCAATGATGATGCAAACACCGAGA
ATCTCAGATGCCGCACTTACTGACGAGTTATGAGCTAGAGCATGGAGTATATATATACGG
ATATATCTCTTCCTCCGTGGCAATTTCTATTGTGGTCTGCGAGGACAAATCCTCGGGCGC
CAGGACACGACACGCCCTGCCTGCACTGCAACTGCATGGAGTAGTGACGAGAAGCAATGG
CCTGCGGGTCACCGACGGCGGGCCCGCGGGTCATGTATAGGCGGGCCGCACCACGTGGAC
GCCAAGATCTGTCCCGTGGCCCACGCTGCTAACCGGGAAAAAGGCACGGCTAGCCTAATG
AGCACACTATTCGGATCACCGACGGCATCGGCGCCGGCGCCACCGACGCCGACGGCTCAA
CGTTTAGGCCGTGCGCGCGAGCGGCGCGAGCGGATCGGCGAGGGGCCGGACCGGAGTAAA
CTCCGGCCGGCCAACGCAGGGAAGTGAGATCCCAACGCACGAGGCAACAGTGGAGTACTT
AACTTGCCATCCCTCCCAACCGTACTACCATTGCGCCACGGTACGCAACCCACACGCCAG
ATCTAGCAGAGGGCAGTACTGTTACGCCAGTTGCTCCCTGCATGGGGCATGGCACTCTCC
AGGCAATATTGTACACTAGTATTTTGTTTTAGCGTTAAAAGGAAACTTGAGTCCTCATTC
AGGTGTCCGTCCGTCCAGCCAGGCCTTTGGGCGAGACAGCGCAGTTGGAACTTGGAAGAA
GAGTTAGTTGGGCTTGGACCCATCCTAAGCTTGCCTCCAAACAGGGGAACTCGCGAGCGA
GCGATCCTGATTCCTAGACTGAATCGCGGTGGTGAAACCTTTGAAGCACGGCGGCTTCTG
TCTTTTCCTTTCTTGATGATGATTATTTTATAACCTACACTACAAGATGCCAATTCTTCC
TACTTTTGTTTCCCCTTGTTAAGGCACGCCACTGAAACTGATGTCGCAAATGACAAATCT
TGAAGTGATGGGTTTTTCTTGGGTGAACTTACCAAACCTCCATCGCGCCTGGACGAGGGC
GATCTCCGGGTTGTGGTGGAGGTAGGGGATGGTGCGGTGGAGGAAGTCGGGGTCCGGCTG
GAAGTCGGCGTCGAAGATGACCATGTACTCGCACTCGCGCACGTACCCGTGCTTCATCCC
CGCCTTGAGCGCGCCGGCCTTGTACCCCTTGCGGTCCTCCCGGATCTGGTACGTGATGTT
GATCCCCTTGTGCGCCCACCGCTCGCACTCCATCCGAACCATTTCCTACACGGGTGCAAC
ACACGATGATTAACTGTCCCTTGATTGACAAGCAGAGCACATTTCATCATCATATTCACA
ACGAGCAGGCAATCATTGGAGTATTGAGATAATAGTCTTGGCATTTTCCTAAGCATGGAA
CAATCCATGTAATGACATGTCTAGATGTCATCATTACATTGTACGTACTAAGTAGTAGTA
CTAAGCACATGGTTTACGCATCGTGGGCCCCTGGTAAACCAGGACCAAGCCCGGAAGGGC
TAGTGGCGTGGAACCAAACGTGGATTACAATCAACGTCCTAGCGCGGGCCAAGCAAAGCA
AGGGCTGACCTGACCATGGCCTAAACTAACGAGTAATGAGAACCGACGACGGAGCTCCGT
ACGCGCCCCGTGCTTAATTACCGGAATCACGTCTACCGATCGCGAGGATCACGTACGACT
ACGGTGGCGACTTGATTACAGGCGTGCCCCGTCACGTGCCCCGCACGTGATTTCCAGGGG
AATAACCGCCTGCCCCGCGCAGGGGGGGTTGCTTTGCCTTGCTCCCGTTTATTTTATTTT
CCATCTCTTAAATAAATTACCTCATGGAATACCGTAATAATAAATAAACAAATAAAAGAA
AGAAAGAAAATACTCTGACAAGTGCCAGCTCCCGTTAAAAAAAAAGATAAAAATGGGCCG
TCGGTCAAACCGTTGGGCGCATTTAATGCGCACCCAATCTCCAATTAACGACGCAGGACC
CCGCGCGCCCTCTTGCTATATCTCTCTCCCCGCCAAAACCATCGGTAGTCGTTCCTTCGC
GCGCGAATGAAAGATGCCCACATTTTTTTTTTCGGCCTTTGTTCCTCGATTGCCGAGACA
GGCATTGCGTTTTGCAGGCTGGATAAAAATGGGAAACGGTTTTGATCCTTGCCACCCCTC
CCCTGTTTTCCGATCACGGAAACGGAGAGACGTGCGTACGCGCACGCAACATCGCTTGGC
CACCGACGGGCGCAAGCAAGCGTGTCAACTGTTACTCCTCCTAAACACGCGTCTGAATTG
ACTGGACACAAGTGTATAAAGAAACCTGTAAAGAGCCGCACATGGTTAGATTTGCTACTA
GGGTGAAACTGAGAATTATTGCCAACCAAATCTCGCTCAGAGCTGGGGCATCGAACTATA
ATTATGATTTATGAACAGGGAGAAGCCCTGTGCCGTGACGGCGACCGCGAGGCAGTGGCT
CAGGGCGACGTGTCTAAAAGACAAGGCCGGTCGGAGGCTGGCACTGCAGAGCGCGGCCCG
GGTGTCACGGCTTTTCCGTTGGGAAAAAAACGTAAAGGGGAGTGCGGAGTGAGAGGGAAT
CCCGGGAGCTTCGAGGTTCGGTTCGTGTGGACGGACGGATGGATGGATTGGGGGTGGGGA
TGTCACCGACAGGTGAACATGAGGCTCCATAATTACCGAGGCCGGTACTACTGGCGCCAC
TAGTTGTACTGTTGGACACGAGAGCGGGGCGGGGATAAGATCTCGTCGTCTCACCTTGAT
GAGGGGGTCCGTGGAGTCGTCCAGCACTTGCACCACCAACCGATCCGACGGCCACGACAG
CCCGCACACCGCGCCGATCGACAGCTGATACACCTGCACGTACCACCATGCACGAAATGG
GGAAAATAAATGTTAAATGCTACAAGAACCAATGAGTGAGTTAGAACACTGAAGCGGGGG
GGCTGGACACTGGAGCTCGAGCGGGGTTGGCGGCAATGGCAATGGCAATGGGGGCGGGAA
ATGTAGTGGTACCTCCCGCTCGTTGAACATGGGGATCTGGACGAGCACGACGGGGAAGGC
GGCGCTGCCGAGCTCCGGGTCGTCGTCCTCGGAGATGGGGTCGCATTTGTACCGCCGCTC
CGGGCGGCGGCCGAGGAGCTTCACCCCGACGATGACCACCGCCATGTAGAGCCGCTCGAG
GAAGAGCAGCACCGACATGAGCAGGCACACCGCCACGGCCAGCTTCAGCAGCGGCACGAT
CACCGGCGCCCGCACCTGCGACCACGCGTCCGGCAGCCCCACCGCCGCGTCCATCGCTCG
CCTGCTAAGCCCTTGGCCAAAGCTGGATCCCCTCGCCGCCGGCCGGGACGAGGCAATGCC
GCGGGCGAGGAAGATTAATGGCGCGCGCGCGACCTTGCTGGCCTAGCTAGAGCAAGCTAG
CGCGCCAGGGGCTGCGGGCCGGGCAGTGTGGAGCGAGCTGGGTGGGGGACTGGGGGGAGC
TGCTTTGGGGGATGGAGTGTGTGTGCGGGGTTTTATAAAAGGGGTGGGAGGCGCAGCTGC
ACATGGTAGTAGGGTTTTGTGCGCCATGGATTCCTTCCGTTTCCAAGGAGTGTAAAATGA
GTGCGGAATAGGGTACACTCCTACAGCGGCGTGGTGATAAGTAAAGGGCGGGGATTTAAC
AGTGCAAAGCGAGGCCATGATTTGTCGGGCGGGGGTGAGAATAGATCGGATGGGGTCGGG
GGAGGGGAGTGTCGGTGGTGCGCCGCGGGGGTAGGACTTGGAACAAACCGGCTGAGCTCA
TGTGTCACAGGGTCAGTTAAGTGGTTATTGCTTACGCCGTAGTAGTAGTGAGTTGGCATG
GGGTGGGGTGGTTTCGTTTGTGGATGGATGGATATTGTGCAGCTTTTGGGTGGGATTTGC
TTTTTGGCCAAAAGGAACGCGAAAGCAAATTAAGAGCAAAGAGGGGAAATTGAGGAATCA
TGTTCCTAGTAGGACATGATTCTTGTACTGTATCAGGGGGGAAATGCTAACACAAATTGC
TGAGGAAGGCGAAGTACAACGTAGGTAAACATGCGCGCACACACACACACCGCAACCTAC
GCACGCGTTGAAAACCAGAGTCTTGGAGTTCAAAATTGAAAATAATCACATTTATCTTAC
TATCGACTGAAACATCGCACTCCTCTAAAAATAACACAATGCATCAACATAAACATTTGA
TGCATTGTGAGTTAGAGTAGAATTAGTCTCATAACCACCTTTTGTCTCCTGAAATAATTG
TCTCACATTCACTAGTTAGTACGGTGTGTAATAGTACGCCGGGGAGAAATTCATAGAGCA
ATAGCAAGTGTGCAATGCTTTCGCTTAAGAAGCATGGGCTCTGTCTCCCCCGCCTACCTA
ATAACAATGAAAGTCAAGGAAGGAAACTTTCCCCTTTAACATCGTTTTTTGGTAATACTA
TCCTTCTTTTTATGGATCAAGATACTATTATACTCGTATCTTACTTCGACCAAACTTATT
TTCTTTGATAGTTTCATCACCTTCGTGATTAGATCCGATTATTCACCCCTAGTGGATATG
TACTTCAACATTGTGAAACATGATATGTTCAAGACTCGCCACGTCTAGCGTTAGCTCGAA
CGCAGTCGACGGCAATCTTGCGATGGCAGCAACCAATTTCGAGCGTGACATATCGGGAGG
ATTCGTTGCGAGGAAAATTAGGGAGAAAATAACATCTCGAGATCTTCTTTGCGGAAGATC
CTTTCAGAATTGAGGAAGCCATGGGAAAATAGATATCTACTATCCATGTGTGGGCAGTAA
TGAAGGAATCTAGGAAGGAATTGAGCGGAATAGATTTGTGTATCCACAACACAAGGAAGA
AAAGCATTGCAACTGCACCATGTGTCGGATGAAGGACAGGTGTCAGATGCGAAAAAAAAA
GTTAACGGTAAGATAATCGTGGGATCTAGGGTTCATTTGCCACATATTAGGAGGAGGATC
CACCATATGATCGAGCATCACTAGGAGCAAAGAAAGAATCATCGGAAGTTATGACCCATA
GAGAGACCACCAAAAGATCGAGCACAACCATGGTTATAGCTGGCGATCTGAATATGAAGG
AATCCCTTGCCGGGGCTGCAAGTGAATCCTTGGAGTCCCGCAGCAACAATGAAACCGGGA
CTCCCCTCTTTGGAGCTTCCCCGAAGGCAACAAACTGCAATGAGGACGAAATCAACAAGT
AATTAGAAGCGCTTTCTTTATGTCTTTGACCTAGGCATGATAGTTTTTTTAGGACATTCA
AGTTTTCTATTCTCCACTTCCCATAGATATATTTAGTCCCAACAAGATTTCATAACCTTT
TTTGTTTCTCTTTCTTGGAAAATATTATGAGCCTTTCCTGATTGGGGATTGAAATGTCAT
TGACCCCTCTTTGTGTCAATGATTGCCTCTACAATTCTTAGGAATGTCTTCCCAAGATAA
TTGGGCATAAACGGTTAGGCTCCATATCCATAACAATAAAATCTACAAGTACATCATTCA
TATCAACAGCCACCATATATTCAACTTTTCCAATAGGTTTATTTGTGGTGCTCTCTCCCA
AGTGAACGTTAAGCTCATATTTAGTAAGAGGTTTTAATCCAAGTGCATTCCATACTTTCT
TAAGAATTATGGATACACTTGCACATAGATCACACACAGCATCACACGCGATGATGTTGA
TACTAATCTTTATCGATGGTCTCCATCCATCTTCCAACTTCCTATGGGTCAAAACTTCTT
TATTATATTTCTCTTTCCTAACAAGGCAAAAGGAACTTCAACAATATATTTTGTGAAGTC
ATTGCTTTGCTCTAAAGACGTAGGTTCTCTAGCCATATTTTGTAAGGCATTAATAACATC
GGGGATCTTACAATTATTATAATAAAAATCAAAACCCTATGAAACAGTGGGATCATCAAT
CCCTAGATTTTTAAACCTCTTCAAAACCCACTTTTCAAAAAAAAAGATTCGAGGGTTTTC
TCTTGTCTAGCCCGTCTAGCTTATATCATGCATGAATTCTCATTGTTTTTATCATTTTAG
CTTGCAAACTTTTAAGTGACTCTTTAGTACCATATTTAGGAGGAGGATATTTCAACTTTA
CAGCTTCTACATCATTAGCAACTTTTTCCACCTTACCAAATAAAACTCCCAATATCTATC
AAACTTATGTGTAAATTTTTTTGTGCAATTCTTATTTGGAAGTGATGAATTATTTAACCA
TCTCTTATAGTCCAATGGGTACTTGGTTGTTACCATATGAGTTATTTTATGGATATGTCG
AATAGTCATTCCTATAATGGTTTTATAAGGATTGTTGTTGAAATTATTTCGAGTAATGAA
ATTAACATATCACCAATATCCTCTATAGTTGTTTCCATGGTTGTTACCATATAAGGATAT
ATAGAATAGTCTTTCTCATAGTTGTTACCATATAAGGATATGTAGAATAGTTGTCCCCAC
AATTGTTACCTTATAAGGATTGTCCTATAAGAATAGTCGTTCCCATAATTGTTCAACGTT
GTCTTTTGATAACCCACAAGTGTAGGGCATCATTTGTAGCCTTTTTCGATAAGTAAGAGT
GTCGAACCAAACGAGGATCTAAAGGTAGAATTAA