morexGenes - Barley RNA-seq Database

Contig contig_1562819
Source Contig contig_1562819
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562819 (7358 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_1562819

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12214	1	1471 bp	MLOC_12214.1	Available	Available	LOC_Os06g28124.1, FRAME:-3, EVALUE:6e-175, 13106.m02900 protein glycosyltransferase, putative, expressed
CDS Structure of MLOC_12214

Contig Sequence (7358 bp)

>contig_1562819 7358 assembly3_WGSMorex_rbca.fasta
TAGTCCCGGCACAGAGGCAGGCCGGGACTAAAGGGTCCGGGCCAAAGGCCCGTTTTTCAC
TAGTGACATGTCCCCGCTCCCTGACGCTCCAAAGCTGTCACGTGAAGCCCCGTTAGACCC
GGTTTGTGACACAACCAAAACTAAAAGTTTTGATCTTTTGTTTCGATTATTTAGTTTCGG
TTGGAAAACCGAAACTAAAGGGACGTTTTCTAATAATGAGAGCCCCCGATCGAATAAAGG
ACATGCAATGTGTAGCAATGTACTACATCGTGCGTGCCATATGATACAGAGAAGGCCAGG
AAAAACAATAATTCTAAAAGGACGATATATTGGTTCAAACCTTTTTTAAATAAAGAACTT
CTTAGCTAAGTCTAAAAAGCAAGAAAACCAAAGATAAAAAATTATCTAGCCGTGGAATCG
ACGAAGTAGAGTGGCATTACATGGGTTTGGATCCAAGCGATTCTCTTTGACATTTGATAT
CTGATATGCTCCTCCATTGAACACCTTTTTCGAACGATCCATCCCAGGGTGCTTATGCAT
GCTGACCTGGCTTCTCTGGATAACGTTGTAAGACTAGTTTGTCAAGGTTGACGCCTTCAT
CTGAACCTACGGGTTTGAGGCCTGTGTCAATACAAGTCTTTTAGCACGGTTTTATAGATA
TTTTTTATGTAACATTGTATTTAATGAAGAGAGATTCTACCTCCGTCACGGTTTAGAAGG
CACAGTTAAACTCACGTGCATTTTCATAATAGACAAGGTTTAAGACGCATTGTATTTACT
CTTAGTATCTAATTAGTATTCTTTTATACTACTTCTATATGCATGCGTAGTGTGAATGCT
ATTTTTTAGCCCGTCTCACAGCCAATCAATAACCACCTAGGTTCCAGAAAATTTACATGC
ACGTCTTCTAAACCATGACGGATGGAGTAGTGAAGTTGTATCTTAACTAAAATACAACCT
TACAACATGGTCATAGGCAGAAAAAAGATGTTAACCCAATCATATACATGCATGAGCCAG
AAATCATTAAATTTGGATACAATGCATTGTACTAGTTGTTTCTTATGTTTTTATTACGCA
TATGAGGCGTATGATAGAGCTTTCCACCCCTTGACGGCTTGCCCCAAAGCGGTGTTGCAA
CACATTTTCTTTTGAAAGTGATGTAACACTTTGATGCCACGTGGTGCGCCCCCTTGTGCC
ACCCAATGAGACAATCCACTAGGAGGCTCTGAAATATTTCAAAAGCTTCCAAAACCTTGT
AAAACTGTGCAATCTATAAATATATAAATTAACAACTGGTCGGTTTATACCATGAATATT
TGGGTCTCACCACCATGATTTCCAATCATCTAATCCCACGTCAGTTCCTACAATACAATC
TGTAAATTTTATCCGTAGGTCTATCCTCTATCCCCTGAGCGTCTGAAGCAGGTGGTGTAG
CACAGGCGCAAATCTGGTGACGTTGATTCTGATATCCTGCTCTAGCCAAAAATACTGCCT
TGTCAACTCCCACCCCTGCCTATGTATCGACTCTGGGTCACTGATCATTGGGTGGTCCTT
GCCGTACTTCTCATAGAGCGTGCTCTCCTCCGCAGCGATGTTGTACTCGACGTCCTGCAG
CATCATCTCCTTGGCTTGCACGCCAAAATACGCCATGGCGGTGTCCACGCCCCATGGCAC
CACCTGCAGCATGGCCGCGTTGGTGCGGAGGAAGAAGAAGCTCGTGAGCGCGGCCCCGTG
CGCGCCCATTAGCACGTCGCACGAGTCCACCACCCGGGAGAACTCCTCGAGCCTCACCTC
AAAGCTCGGTTCCTCGACCAGCACCTCGAACCCGGCGGCCTGCACCGCCGCAGAGATCTC
CGGAATGTTGACGAACTTCCTGTTCCCGCCCCGGTTGATGAGCATGAGCCGTGGCTTTTG
TTTCTCCGTTCCAGTGCCGGTGGTTGCGTTTTTCCTGTTGGCCTCCTTGTACGGGATTCC
TTGACCATCCTGCGGGAGCAAGAAGATGTCCCGGATGTACATGCGGAAGTCCAGCATTGA
GTAGTTGCGCGGTGTGCGGGCCGGGTCGATGCCGAGGTCACGGTGGCTGTGGAGGCCAAC
TATGATGTGCGGGTAGCACCGGACGCCATCATCCTTGTTAAAGTCGACGATGTCATAGCG
TGATAGGTTGGCGAGGATGAGGCGGTACTTGTCCACGAACCATGGCTGGAGCTCGGTGAC
AAGGAATTGGACCTCACCGTCGTATGCGCGGGTGGTGATGAAGAGCGGGATAAGGACGTC
GCCGAAGCCGTGCCACGGGTTACCCGTGAGCCCGTTCATGGCGAACACGACGGCCGGGAC
AGCGTGCCGGGAGGTGCACTCCGGCGCCACCAAGGACTGGGCGGTGCTCAGGGTTTTGAC
CTTCACCTCAATGATGTCCACCAGTAACTTGCGGGACTGGTCCTTGATGGCCCATTCTGA
GCCGCCGGTGTCGCGCTCATCGGCAGGCGGGACATAAAGGATGGTACGGTTGAGACCGAT
GGCACGGGCGTCGCCAGAAATGTCGCAGATGTCATATCTAAGGTCGGACAGGTCGCAGAT
GGGCTTGCGCGGAGCACCTGCATGCATGTGGCCGATCGAGGTGTTACTCATTCAGATGAT
GAATGAAATGCAATGGCATATATATGAACGGATTTGAGTTTGTGGTGGAAACAAAGCTAA
CCATGTTTGACGTTGCTTCCATTATTCCCATAACGGCCGTCTTGATCGAGTTCTTGCCGA
GTGAGATCTCCCTCCATCTTGTCGCTGGCATCTACTGTTTGGCCTAACTGGTATTTTTCT
TTATTATCATGCACGCTGCCTGAATTGTTAAATTAATTAGAAGCTGATCAATCAGAGAAT
TAAATTAACCGCATGAGACTAGCTAGAGAATATTTGTTACACATATAGGACAAAGGGTCA
AGACAATGATCATGTCCATAGAAACAAAAGGTGAGTTACCAGTCTTGTTAGTCATCGTGC
ACTGCAACTATCAATTTAGTGTACATCAACATGCAGTGTGACGAAAGTATGTCTCGTGAT
GTATCAATGGTATGTATTTGGTATATAACTCGTATCCTTCCTTTATAACAGTATGATCAT
TAACATGTCTGCTACATAGGTACACCCTCCGTCTCAAAATTCTTATCTTTGATTTGTTTG
ATATATGAATGTATCTAATTACGTTTTAGTATTTAGATACATCAATTTCTAAACAAACCT
AAGACAAAAAACTTGGGAGGAAGGGAGTATTATGCTACACGTGGACACGCCTGGACCGTT
TGTTATATAAGCCATTGTTAAGCTAGCTACATGTGCTGTGGGCTAATTAAGGAGTTCGCG
CGTTTGGCCATTTGACAAGACTCGGTTATGTTAAGCGCTCATAGATATAGGGGATACGTG
CATATGTTTATCGTGATGGTGAGTGTATATATGCGTGTTTACGTGTATTGTGTTTATAGA
AAGACAATCATGCTAAATCAGAGTATAACCGGACACATAGTAGTAATTATATGTGTACCT
TGAATAGAATTATTAGGCACCGATGACGCTGATGACACCGGAGGAGGAGAAGTCATGGCG
TTTTGCTCGGTACCCTCTGCCGGCGTGGACTGCAGAACAACTGCACGTACAAAGAAACAA
GCGTATATTGTGAAGAATTTTGTAAATAAATAGACATTTCAAATCTTATAAATAATTTGT
GGCGTCATTTTCAGACTAGAAACTTTGTAAGTGAATCCTTTAGCTTGTTGTTTGGCATAA
CTCCTCAATGTTAACTTTAATTAGTATTCCATCTATCTCCGAAAAGAAGACCTACAAAAA
ATTTCTAGGGTGAAATGGTATATAGTTTGATCATGTTTATAGGAAACACCATCAACAACT
ACAATACTAAATAGACACAATATGATAATATATTTATTGTGTATCTATTGATATTCATTT
GGTATCATATTTCTTGATAACTTTTCCTATATACTTGACCAAACATATTGCACCGTTTGA
CTTTAGATAAAATTTGTAGGCTTTCCGTTCATAGGCAGGAGTACTAGTAAATTTGGATTT
AGAGATAGTGGATTGCATGTGTGCATGACAAAATGTGGTGCATTCTTAATGAACTTATTT
GAACAAAATGCGGTGCATTCTTAATGAACTACTAAATATAAGTCTTTTAAGAGATTTCAC
TAAGGATTACATGCGAAACAAAATAAGTGAATCTATATTTTAAAATATATTTATATGCGT
TTGTATGTAATTCGTAGGGAAACCTTTTAAAAGACTTACATTTAGGAATGAAGGGGTAGA
AAACATGTAGATCATCAAATCTACCGGTGGGGTCAAGGGAAACAACAAACCAACAACTTG
TGTGAGGATAATGAAAAAAGGCATCTAATTCTGCAGGAAGGGAATGAGGAGAGACAGGTG
TGGAGATCGGACCTCAATTCTAGCACTTAAGTGAAGCAAATGAAACATTTTAGGCTCCGC
GAGACTATCTGAGTATGTTTCCTTTGGGGCATACAACGAAAAGCTAGATTTCCATGGTGA
TTTCGTTTTTTTGGCGAAGGTAACTGAAATAGCTAGATTTTCATCGATTAAGGATTTGTT
TCAGGAGCCTCTAAGCGAAATTTATCTCTTCTTAAAGATGATGTAACTGTTACTCAAATA
AATGAAATTTGTCAACTTTCAAAAAAGAAAGAAAAATTGAGATAGGGGAAGAAGGTTTTG
CAAAAAAAGAAGAAGCAGAAGAAGCTTATTACTGCTGTAGTACTTACCAATGGTATTCGT
GGACCGGAACTGACCAGACACCGTTGTATAGAGCACAAGGCTGACGAAGAGACCAAGCAA
GAGCCCTAGCACGGCCTGGTGGTGGTGAGCCAGCCTTCTGGCCACGCCTGACGACGACGA
CGAGGGCGAGTCGGCGGCCATCATCGCCGTGCTGACCGTCGGTCACTTCTCCTTCTCGGC
ATATATATCTATGTATATATACACATACAGGCAGTCTGCTGGCGCCTAGCTACCTAGTAG
CGATCTCCATCCATGTGGTTCTACGAGCCACGTAGGGGTTTAGGAGGGCTTGGGCGATGA
GCCCACATGGATCCACTCGCACCTGGCTAGCTTGACGTTGTGCTATTTACTTTGATACAT
TATATTCCGCATGACGTGCCATCGCCTGACTAGCTCTCCCGTTCTGCAAGTCTCCGGCTT
ACCACCGACCCAAGGTCCTCGATCGAGTACAAATTTAGTCTCACAACGGGCTCCTTCTTC
GACGATCAGCGCATCTAGTGATGCCATTAGAGTACATGCATGCATGCACATGTGATGAGA
TCAATGACACCCAGTGTCAACCTCAATGCGCAATTAATGAGGTACGAGAACCGTTGATTA
AACTAACCCTCGCGCATTAAGCGCATCTGACCTGAAAAGAAGATCTAGTATGCTTCCACT
TGAGAGTTCGGAGACTGCAGTGGCCAGGAATGTTAGGCATTCCACCCCGGAGAAAAAAAA
AAGATATTTTACCAACATTCCGCCGGTTATGTTAAGGTTTTGTAAGTTTTATTTGGTTCT
TTTGTTTTCTTTTTAAGTGTTCTTTTGTTTTATATTTTGCTTTTATTATTTTCCTTACTA
ATTTTTGAAGGGTATGGTGAGCCGGATCCAAAATGTGCGGTAGTCGTCTAGCTTGCGCCA
TGGGGGCATCAGGCTCGGGATGGTCGAATGATGAGTGGCATTTGCGGGCCGTCGGCACTC
AGACTCGAGGTTCGGGGTTAAGGAACTTGGGGGCAAAGCGGAGTTCCGGTGATCCATCTA
CTTGGTGGAGATGGTGGGTCTTCGGAGTACTTAGCGATGCTCAGTGGTGGTGTAAGAAGA
GATAGAGGGGTTGATGGAATAATTGCTTGTATTGCACTCAACATCCCCCCGCAATCACAA
CGGTAGCGATGGAGACAGTGAGACTGGAGAAGAATCCAAAGGTAAGCCGACGGACCCCCT
ACCCCCAGTCATAATGGTCAATGCATCACGGAAGTCGTGGTTGGAGTGACAACCAACGAG
GTTGCTCAAGCAAGACAGTAGCCCTTTATGCCGATGTCGAGGTAGCTGAGAGCGTAGGAT
GATGGAGTCGTGGTCGAGGTAGCCGTGCGAAGAACATCGTGGCGATGTCGAGTTGCGGTG
GCCGGTGTCGAGGTAGTCGCCATAGAGTCGCGGGCGAAGGAGGCACCGAATTAGTCATGG
GTGCAGTGGTGTGCCAGTAAGAGGAAGCTGTTGACGGCGCGCCACACTGGGTTTGCCAAG
CTCGGGGGACACATCATGGACGAAGACATACATCGGTGTTGCCAGCACCGGGCATGCGTA
TACGGATGAAGTCAATGTTGACAATGCTCAATGTTGACAATGCGCCGCTCCAGGCTTGCC
TGACTTGGGAACAAGCCGGGGACAAAGGTATGCTTTGATGTTGTTAGCACCGGGCATGCG
TAGACAGGGACCTACACAAGTTGGTACGCCATGTCGAGGGGGCTAGCAGAGAATGACTCA
ACGACGGTTGTGGTGCAAATCAGCGGGCCGCCAAAGTCGTCTGTGGTGGTCGGAGTAGAT
GACGACGACGCTGGTGATGAGCTGGTGCTGGACGAAGACGAAGGGTGTGGACGGGCAACG
TAGCTCGGGTGGGCGAGCTGCAGCAGCGCTGATACGTCTCCAACGAATCTATAATTTTCT
ATTGTTCCATGCTATAATATTATCATTCTAGGATACTTTTTGGACATTTATTTGTTGGTT
TATATTATTTTTCAGCACTAACCTATTAATCCAATGCCTAGTGTCATTTGTTGTTTTTTG
TGTGTCTTTAGCTTTCTAGGTTTACAATACGAGACGAAGTCCAATTGCCACACAACTTTT
TGATGATTTTGGATGGATCAAAAGAAGACCTGGAAGCTTCGGGAGGAGACCGGAGGCTGC
GCGAGGGAGGGAACACACATCAGGGCACGCCCAGGGGGTGGCCGCACCCTGTTGTGTGCT
GCCCCTAGCGTCTCCCGACGCCCCTATCCGTTCTATGAATTTTTAATATATTCCAAAAAC
CCTCGGGAGCAACCCGAAACACTTTTTTCTCCTCCGTAAGTCTCTCTTACGCCGTGTGCC
CATTTGGAGCCCTTTTCCGGTGCCCCGTTGGAGGGGGGATTAATCACGGAGGGGGCTCTA
CATCAACCTTTCTGCTCCCATGGTGATGTGTGAGTAGTTCACCTTAAACCTACGGATCTG
TAGTTAGTACCTAGATGGTTCTCTATCTCTCTCTCTCTCCCTCNNNNNNNNNNNNNCTCT
CCCTCTCCCTCTCCGCTCTCCCGCTCTCTCCCGCTCTC