| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_1562648
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_12143 |
1 |
966 bp |
MLOC_12143.1 |
Available |
Available |
LOC_Os07g12080.1, FRAME:-3, EVALUE:3e-29, 13107.m01242 protein LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed |
CDS Structure of MLOC_12143
Contig Sequence (3859 bp)
>contig_1562648 3859 assembly3_WGSMorex_rbca.fasta
TTAAGCGATTTCACTAGTGGACTACATACGGAGCAAAATGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNATCCGTATGTAGTTCTCTAGTGGAATCTTTAAAAAGACTTATATTAT
GAAACGGAGGGAGTAACGTTTTAGAGATGGACATAGTATTTCTAGGCATCAGCAACGATC
GCCTGTGCCGGCAGCTTGGCTGACAGCCGGCCCTTCTATTTTTTGTTTGAAAGCACTTTC
GTCCAAGAATCCGGCAATATGAAATCAGATAAAGTGATCTATGGTAAACATACCACGGGA
AGGGGCCCTTTCCATGGTTTGATCTGTTCCGCCGTCGAACGTCGGAGACCACCTCCATGA
TCTTCCTTCCTAGTTCTAGCCAGGCCGTCACAACACTCCTCCGACGACCATGAAACAGGT
TGATGCGATCGGAGTCGCCGTCCCGACTGATTCCTGCAACGAATCTCCCTCGTCGTCTTC
CTCCGCCAGTACCCAGACCTGCCCCCAACTCGGAAATTTAGAGTAGGAACCGGTGGAATC
TTCCCCCGCAATCCCGCTCCCCTCGTAATCTCCGCTAGAGAATGATAGGTCAAGTTCACG
AACTCTGTCGGATCATCTCCAATATTTTCTCCATTTGTCTTTCCCTGCACAATCTAAGAA
ACGATCGACACCTTGAAAATATCAATGGTGACACAAGTACCTTCGATCATCTGCTCCTCC
TCCTACAGATAACGTCCGGCTAGGATGTCATCCTGCAGATCCGTCACCGTCATCCATCGA
GACATAGGATGAAGGTAGAGAATTCCCTCCCAACGATCTTCCGAATCCACGATGCAGAAA
AACGAGATCCGCCACCGGAGATGCTTCTCCCTTGCCTCGGGATCACGCATGGGATCCCCG
TCGTCTTCCGACGGCGGGAACGACAACAACGGTTCAGGCAATATCACCGGCTCTGGATCC
GCCGGATCGTCTTCCCCGTTCATCGCGTCCTTCCTTACGGATAAATCTCTTAATAAAATG
GGGGAGAATTTCACTTCCCGGCCTGTCCACCAACTAAAGATGCATACCTTAAAAATTGGA
GAGATTTTTACTTCCCGGCCTTTGCACCAACCAGGAATGCATACCCAACCAAAAATGCAT
ACAACCATTTTAATATGAGTATCAAGATAAACATGATCCTTATAATTTTGTAAATGAGTA
TCAAGATAAATCATCATGCGTGGTTTCACCACACAGACCAAGATTGATCCTCAATAAATA
TGAAAAACCAATGTGCATCATCGTTCAATTCTAGTAATTGAACTTGATCGTTAGGCTGCA
CAACCACATGCCGAACCACTGAGCCAAGGCGCTTCTTAATTTTTCTAATGATTTCGACCA
TCAAACACATGAATAAAATATCAGAGATGAACTTTAAGAAGCCGATACCTTTAGGGCCTT
GTACAATGCAAGGTGTTTAGGAAAGATGCTTAGAGAAATAAACCAAGTTTTTCTTAAGCA
CCGGTGCTTATTTCTACAGGGTAGACGTTTAGTTAGACGTCTCTTCTGTAGAAATAGGCA
CCGATGCTTCAGAAAAATCCAATTTATTTTTCTAAACACCTCACTAATCACCTAGCATTG
TATAAGGCCTTAATTATCATCCTTGTGCCTTAGAGTATTTGTCGGTCTGGTATTGATGTC
ACACCAGAGGCAAGAAATAAAAAAGCTACAAAAAATGTAGAAATTTTATTAACTGTTGGA
TGCTTCTCGACTTTTCTAATAATTTAGACCACAAAACACATGAATTGAAGATCTGAGTTG
AGTTTAAGAAGCGACCCCGAAAAGACTCCCTTTATTCTTATCCATATATAACACATAGCG
CCACACATGATGAGCGCGAGGAGCTCATATATGTATATATGCATGTCACGCACATGTATG
GTCGCAACATGCTTATTTATTCATGAGCTACAGAATTGTCTCTAGTTCCACTGCCACTCA
TCCATGGCGAGGCAGTATGGAGTGTTGTGAACGGTCGTCAAGTTGCAGAACCCCGGCGTG
ACGAGTATCCTGACGAAGTCCATCTGCACCTCCCTAGGGCACCCGGGGAGTTCCATGAGG
CCGCTCTGATCGGGACGAGATTTCCGCCCCATGAAGAAGCGCAACGCTTGGCATCGGCAC
TGCTGCGGGATGTTTGCAAGCTCCCCGCAGCACTGCTGCTTGGCGAGGTACGGCGGCCCG
GGCGTTTCGATGCGACATGCTTGCTGTTCCACATAGTCGCGGCAACTTGGGAGTGGAGTG
ATCGGAGTAGCCGTCCATGGGGTGCAATCTTCGCTGCCGACGGCGGCAACGGCGGCAAAG
ATGGAGACTAGGACGGCGGCCAAGAGGAGATCGCAGCTGGACTTGGACGCCATATTTTTG
GATGGAGGCCAAGTTCGTTGGTGTAGTTTCTTTTTTGCAATGCACTGGTGGGTGTATGCT
ACATGGACCACACTTGCATGGATATATACCCCTAGAAAGGTTAGAAAGGCAGAGCTGGTC
GCAATTAACTAAATTTGTAGTGTTATATGATGATTATGATGAGCTAGAGTGCACATAATT
AGTTAGTTGGAACTGTATTTGGAGGGGAATGCAAGCTGGCTTTTGCGTGGAAGCAGTGAG
CGCCGCTAGAGCCTCCCATGGTTGATGTAGCATTCTTTTCTTGTCAAGTTGTCATCTCAT
CAGTACTTAAAAGTGGAGCATCAATTAAGCTTGCTAGTTTATGCGTGAGACTGTTGCTAA
ACCAGCAACGGACTTTGTTTTTGCAAGCTGTGATAAAGCAAACATGTGACGGCAATGTGG
GTGAGCAACTCTGCAAAGCGTTGTTTTGGAAGGCGCTGATAGGCACCGGTCGACCGGCCC
AAAATTCGATCGGTCACTGCGCAGCCATCGGATCCTCACGTCTGTGGCCGTCTGATGTGT
TTTTCATGGTCCCATCTGAAAAACACAAGCGCAAAAAAAAAAAAAAAAAAAACACATGCC
CCCCTCCTCTCTCCGGACACACATATACAGTGCCGTTTCCTCGACTTCATACCAGGCCGC
CGTCACCGCCCTCGACCCCGTCGCTCAACGTCATAGCTCATTGTCAAATCTCAAAAAACA
AAAAGGTATGTAGACCCATTGCAACTTTTTAGTCGCGTCCTTGTTGCAAGCATGGTGGCT
CCACGGCGCCGTTTTCTCTCTGGTGCTACCCACCCCGGTTGCAGCATCAATGGAAATGGT
GGCGTTGACAGTGTCGCTCGAAGCCAAAAAGTTGTGGTAGAAAAACAAAAGTGCCGATTC
CAGCAAAAGTAGTAGACGGTGGTAGCAAGAAATTAGGCTTCTTCCAGCAAGAATCAATAG
ACGGCGGTAGCAAATTTCTATCTGATTCCAACAAAATCAAAACAAGGTAGTATAAAAAAT
CGAGGCTGGTTCCCACAAAAAATTAAAGTGCCTAGAACTGATATAATTTTATCTCATTCA
CATGAAAAATAAAAACAGATTTTATTTTTATTTTTTAGAAAAGGAGGATGACCCCCGGTC
TCTGCATCTGGGAAATGCATGCGACCATTTTACTGATTATTTCCGAGGACCTTACAAAGT
AGTACAACAATATGCTTGAATCCACCATCTTGACAACATCTGCCGTTACTTCTATCCATT
TGATGAAGGGGTGCAAGCTGAGCCAAATACTCAGACCTCTCACTTAAGCCTAACATTTAA
AGCCGGAGGCCCCAACCGAGCCACATACCGGGTCAGGGACACAAACAACACACTCACATG
TGTCGCCGCCATCATCTTCCACCGGTTCATCTTCAGAGCAGATTGATGTGCCAGCCTTGG
CAGGTGCCTCCGCCATCGA
