Map Locations of contig_1562627 (5327 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_1562627

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12135 8 2301 bp AK357076 Available Available None





CDS Structure of MLOC_12135






Contig Sequence (5327 bp)

>contig_1562627 5327 assembly3_WGSMorex_rbca.fasta
GGGCGCCGCCCCCCCCCCCCGCGGGCCCCCCTCCCCCCCCGCCGCCCCTCCCCCTCCAAG
CCCAAACCCCGCGGACTGGAGCCGCCGACCCCTCCGGCCCCCTCCTCCCACCCGTCCCCG
GCCCACCCGGCCTCCACCACCCAGACCCCTCGCCCCATCTCCACCCCGCAGACCCCGGGC
GAGGGCGACGACGACGACGACGTCTTCCGCAAGGACGGCGCGCCCACCGCCGCCTCCGCC
GCCAAGTGCCGCAGCAGGGCCTGCATCTCGCTCGAGCTCGCCGTGCTCGTCCTCTTCCTC
GCGCTGCTCGTCGTCAGCCTCGTGGCGCGCCCGCTCAAGGGCTACTTCGTGTGGGGGCTG
GAGATCTGGAAGTGGTGCGTCATGGTCATCACCGTCTTCTCCGGCCACCTCGTCAGCCAA
TGGTTCATCGCCTTCATCGTCTTCCTCATCGAGCGCAACTTCCTGCTCCGCAACAAGGTG
CTCTACTTCGTCTTTGGGCTCAAGAACAGCGTGCAGGCCTGCCTCTGGATTGGTCTTGTG
CTCATCGCCTGGTCTCAGCTCTTCGACCAGGAGCAGCTGGGCCGCACGGCTAAGACTGCC
AAGATCCTCAACTACGTCTCCAGATTCCTCGCCTCCGTGCTCATCGCTGCGGTTATCTGG
GTGATCAAGACATTTATCATGAAGGCCATCGCGTCCACGTTCCACCGGAAGGCCTTCTTT
GACCGGATCCAGGAGAGTCTGTTCCATCAGTACGTGCTGCAGACTCTCTCGGGCCCTCCA
TTGATGGAGCTCGCGGAGAATGTCGGCCGGGAGCCAAGTGGGCGGGTGAGCTTAAGCAGG
GCCAAGGAGGAGAAAGGAACGCCTAAGGTGATTGATGTCGTGAAACTGAGGAAGATGAAG
CAGGAGAGGATCTCAGCTTGGACGATGAAAGGGCTCATCACGGCAATCCGAAGCTCAAGG
CTTTCAACAATATCTCAAAGTATCGAGAGCTTTCATGAGTTTGATGAAACGGAACAAAAA
GATAAGGAGATAAACAGTGAGTGGGAGGCCAAGGCAGCAGCCAATGCCATTTTCAAAAAT
GTTGCAAGGCCCGGCTACAAGTGAGGATCACGATTGCTTCCGTTCTTCTCTGAAGACATA
TTTCAATATGTGCCATTGCCCATTGTTCATTTGTGCAGGCACATTGAGGAGCTGGATTTG
CTGAGATTTTTCAACAGGGAGGAGGCAGCCTTGGTGCTTCCAATGTTTGAAGGGGCATCA
GAGACGGGGAAGATAAAGCGATCTGCCTTAAAAAATTGGGTGGTAATGCAAATTTATACT
TGGTTATAACTTCCATTTTTAATATACTGCAGAAGTTATAAGGGGCATTTATCCTAGGAT
CTAGATTGATTCAAGTGTTTCCTGTTTTGTGCTTCAGTTTGACTTCAGTTGCAGCAGTCA
TAATTATTTAGATTATTTAGTATCTAAACAAGTCTTACTTTCCCCTGGTATGAATCATTT
AACTTCTTGAGAAAGGAAAGAATGCAATGTGCTGCAAAACAGCAAAAGCTGCTTAAAATG
TTACATCTTGATACCTCTACATTGATAACGTTCTATATGTATTTGGATATTTTCCGTTTC
CTTGCTTGATCATTATTTACTGCAGGTAAGCGCATACCTCGACCGCAAGTCACTAGCGCA
TTCTCTGAATGACACAAAAACTGCAGTTAGCCAACTTCACAGTCTCATCAGAATTCTAGT
ACTCATTGTAATCATCATTATCACTCTGTTGTTGATGGGCATTGCCACGACCAAGATCCT
AGTTGTCATCTCATCCCAGCTTCTTGTCGTGGTCTTCATATTTGGAAATGCCTGCAAGAC
TGTATTTGAGGCCCTTATATTTGTTTTCATCATGCATCCGTTTGATGTTGGGGACCGCTG
TGTTATTGATGGAATACAGGTTACTTCTATACTACCCTGTTTTCAAGTCCCCTTTCCACT
GATCTTCTGATGTTAATTTTTGACGCTGACATGTGTCTATATCGATGATAGATGGTTGTC
GAAGAAATGAATATATTAACCACTGTTTTCTTGAAGAATGATAATGAGAAGGTATATTAT
CCGAACTCTGCATTGTCTACAATGCCAATCAGCAACTTCTACCGAAGCCCTGACATGTAT
GACACCATCGACTTCGCTATTGATGTTAAAACCTCAATGGAGAGCATCGCAGCTTTGAAA
TCCAGAATCAAAGGGTACATTCTTAAGCTTTTTCCAGTTTAATTTACCGTGTCTTATATT
AGACGTGCTTCAGCAAATCTGTTGCTTAAGAGGTGTCCTCTTCCATATATGAATAGGCAG
GTCTGCACACGATGTGGATAATGGATGAGTTATCCGTAACTTAACATGGTTCTTTGGGGT
TTCAGGTACTTGGAGAGCAAACCTACACGCTGGCACCCTATCCACACGGTAAACCTGAAG
GACATCTTGGACGTGAACAAGATCAACATGGCCCTGTGTGCCCAGCACACGATGAACTTT
CAGAATATCCGGGAGAAGAGCATCAGGAGGTCTGAGCTTGTGATGGAGCTAAAGAAGATA
TTCGAGGAGATGGCCATTAGCTACCAACTTCTGCCTCAAAAGGTCGAGCTTAGCTATGTC
GGCACAAAGCCGCTGCCCGTGAATGTTTCTCAAGGCAGGTAGAGCGTGGGGAAGATTAAG
AACTGATGATCCCGCCGTCGATGCAGCGGAGGTTGACGACTGATTTCTAGTTTAGTTTTG
CAGTTTGTACCGGAGCTTTTATCATCCCTGTACATGCTTTGCGTTTGCGAGTTGCGTTTA
TCTGTACCGGATCACTGGATAATTGTGTGTCGCCGTCAGCAGCGTATGGGTTGAATTGAG
AATTTGGACTAAGTATTGTCGCTCATTGTTCGTCGCGATGTGGTAAGTTACGGATGGACT
TATTATTACATCTCATCTTGTTATAACATTTTAGATCATTCGGCATTGCTGATGCTGAGC
TTGAAAGAGCGATTTATCCAGAAGTGCCTTGTGGTTATGTACAAGGACACAGTGTCACGG
GGGAACAGGTCAGGAGGACAGATAATTTTGAGTGATCTGTGTATGGCGCAGAAGTTTCTG
GATTTGCACGGCATGCCATTAGTTCGTAGATTTTCATGTAGGGCACGGCGTGTCATGTGC
TCTGTGCGCTGTGCTGTGGTCTGCACCTGCGTGTGCTGGTTGCCTCGGCTCAAGTTGTGC
TCCCTTTGTCATGTGCGCGCTGAGTGTGGTCTGCGCCTTCGTGCGCTGAGCATGGTGGAC
GCTAGATTGTGGTCTGCGCCTTCGTGCGCTGAGATTGGTGGACGCTATCTTGTTTCACCA
CCTTTACTTTCTATAAAGCAGGGCCTTGATGAGTTTTTTCCTCCAACCAGAGAGCGAACA
CTTGCCCGAGGTCGATAGGTTTTTTGTTTCGTTTGTGGCATAAAGGGGCAATGTGGCAGA
AACGATGTGGAAGAAACTATTGAGCAGTTGACAACGATGTACTCCCCACCGCTCCTAAAT
ACAAAATATAAGTCTTAAAAAGATTACATACGGACTATATACGAAGCAAAATAAATGAAT
TTATATTTTAAAATATATCTATATACATTCGTATGTAGTTCATAATAAAATATATCTAAA
AGATTTATATTTAGGAATGGAGGGAGTAGTTTCTACTACATTATTTTAACTCTAGATGGT
GTGTTTTAGTTGTATTTTTTGATTTTTTTTTCGCATGCTTCTATTGTATCAACTGTTTAA
TGATGTTATTTTCAATATCAACTTTGTAAGTATCTACAGCCGCGATTATCAAATTCGGGG
TTCAGAGGCGTCCGTGGGTAGTGACCAGCCACACCTTAAATTCTGGCACACACATCTGCG
TTCCTCATATCCGGCATCATCTCAACCGTCTCTCTAGTGGCATAGACTTTACTTGGATTT
CACGTCCATCTAAGGGCTGTTCACGGGGCATTCTACTAGGCATGAATACAGGGACTATGG
ATGTGTTGGCTAGTTCGGATGGTGAGTACCATATTACACTCCATATCAGCCAGTGGCGGA
GGACGAAACTTTGTTGACGTGGGGCGAACTCTTAAGCCAAAAATATTTTTTGTGCACAAC
CAACATTAAGAATACGAACAAATAGTGCCCATCAATATTTTCATATAATCTTAAACAGAA
TAGTCAAGAACATTGAAAATGCAAACATACTTTAAATAGAAGAACAACCTAAAACATATC
GATAAGCAAAGATTTAATGGCGTGTAGAAGACCCAGGCAACGGTAGTGCCCTATCCTTCT
TGTGAAAATCTTCCTCAATTTTACCAAGATCAAGAATTATAAATATCCCTAGCTCAATGT
AACACACCATCAAGTCATTGAGCCATCCATCGAACATCTTGCTACGTAACTCGGTCTTGA
TGATTTTCATTGCTGAAAAAACCCTTTCAACTGTTGCTGTCGCTACCGGTAGTACCAATG
CCAACTCAACGAGGTGATAAACCAGGGGAAACATGATGTGCCTTTCAAGTTCTACCATCT
TTTTAGCTAGGCTTGCAATATCATGACAATCTCAAGTGGAATGCGAAGTCTTGGATCATC
CTTTATGTAATCCATTGAAAAACGACGACACCTTCATTCTTCTCGACTATCGCTTCTATG
GAATCTGGAATCTCTTCTTCTACTTGTTGAGAGGGCGAGGAATGTGCATTCTCTGTTTCC
ATGGTATTGGCTTGATTTTATTGAACAGGTTGGCTTGGAGCGTTGACACTTTCCCGGGTA
CTTGGATTGGAGCTGCTGTGACTATCACTAAGTACCTCAAAGTATTCCTTCAAATCTGTA
ATTCATCACATAAAAACTGCAATCAGTCACTACATTCTATCTCCTTCAGCCCTTCCTATC
ACAAAATTTAGAGAAAAATACATATGCCCTTTTTCTTTGCCATTCCTTTCCCCTTCCAGT
CCATCTCCACTTTCTGGCAGCCTGGAACTGGCCCTCACGTCGTCACTCATGCTCCGGCTA
GCCGCCGGCACCAGGAACGGTGTGCCCTCCTGCTGACCGCTGTGGTGCCGCCCCCGCGCT
CGCTGTAAGTGGTCCCCGCCGCCACGCGCTCCAAGCTCCCGCTGGCCGCCGCGGAGCCGC
CCCCGTGCTTGCGGGTGCTCAGTGTGCTGGTGTTGGCCATCGCCCCCTCGGCCCTCGCGG
CCTCGCCTGTTAGAAATTTAGGGTTTATGGTCTACCCCCTATTCCTCTGCGCTTATCCGT
GGTGCCGCTCACAATTCGCATATCTGAGGCTAGGGGGTAGGGACCTT