Contig Data
morexGenes
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Map Locations of contig_1562535 (8782 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1562535

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12104 5 1794 bp AK376138 Available Available None
MLOC_12105 4 2146 bp MLOC_12105.1 Available Available LOC_Os09g32840.1, FRAME:+1, EVALUE:0.0, 13109.m03286 protein nucleotide pyrophosphatase/phosphodiesterase, putative, expressed





CDS Structure of MLOC_12104






CDS Structure of MLOC_12105






Contig Sequence (8782 bp)

>contig_1562535 8782 assembly3_WGSMorex_rbca.fasta
CAACGTCGACGTCATCAAGAGGGTACGCGAATCGCGACTCTGCTTTTTACCGGTTCATTT
GTTTGTGATCTGGGGAACCAGCTCGATCCCATCGAGCGTAGTAGAATCTTCGGCCAGTTT
CTTGGATCCGGACGCGAGCGCTAGCTACGTTTCTTGTGCTGCTGATTTAGTGATTTGGTG
CGCATCAGGTGGAGATATTCTTGTTTCTTGTACACCGATTTGGTGCGCATCAGGTGGATT
TTTCTTCGCCCTGTTCCTTTTGTTTTTCTGTAGGTGTCCTTTTCGTTTCGTGCAATTCGG
GTGCTGAATTTTCCTTGGCAAATTAGACGGATCTTGGTCGGATTTTGTTGTGCCGTCTGG
TTGGTTGGTACTGTACTTGTTCTTTGATGGATCTGTCTGATACTCTAACCCGTCTCATGT
ACAACAGTAGAATCCAATGTCAAGTATGTGTCGTTGTGATGCACAATAAAATCAAGCATA
AAAAGGAAAGAAAATACCTACACGAATCTCCACGTAAGATCAATGATATAGGACTTAGAT
GTGCAATAATTATGTCACATCTAGATTTGCTTTAGCAAAACCGACACACTAATTGAGATT
TGAGAGGGTTAGCTGATTTGCCAATGTCAGATAGATCTTGTCATGGTTAGTAAAACTTTT
GAGAAAATGTTTGCATATTTGGTACTACCTCTGTTCGATTTGAACTGTCAAAACGACTTA
TGTTTGGTACTGTGAAACTGAGACGTAATTTCAGAATTTTGCATGTCAGGTAGTTCGTTC
GATATGAACATCTCCAGGACTATATATAGTTTTACGTCCTCAGCACACCTACGGATGACC
AAGTTAACCGATTCATCAGCTATGTTGAAGATGAGGGCATCGTGGCGTTTCCAAACGGTT
CCACTTGGTAGCCGTGCAGATCGTAACTTGACATAGTCGCCAGAGAAGCAGATGACCAGC
ATTTTCATCCATGGGGACAGGAGGGTCATGTCGGCTTGTATGTATAGTTCTATGATCGAG
ATCTACCACATATCAGGTGCTGCTAGATGCTTCAACTGTTCATGGTTAGATTTGTGCTCT
GCGTGCAGAACTTATAACAAAGTGTTCAACTCTAACGATATGACTCTTAAATCTGTCGAT
TTCTGCAAAGTTTCTGTACTGCACTGTTCTGTTTCTTTGAGGGAAAATGACTCGCAACTT
ATATGCACCCAGGCTGCAGTCTTCCACTATGGATCAATAAGCTTGATTGCTGAGCCTTGC
CGGTCGGCACATCTGCGTGCCATGGAGATTGCCAAAGAGGCCGGCGCGCTTCTCTCATAT
GATCCGAACCCGAGGGAGGCATTGTGGTCATCCCGTGAGGAGGCTCGCATCAAGATCTTG
AGTATCTGGGACCAGGCAGACATTGTCAAGGTCAGTGAGTCTGAGGTCGAGTTTTTGACC
GGCATCGACTCAGTTGAGGATGATGTTGTCATGAAGCTGTGGCGCCCTACCTTTAAGCTC
CTCCTGGTCACTCTTGGAGGTCAAGGATGCAAGTACTATGCCAGGGTATGATTTACAAGT
TTCCACAATCTATTGTTAGTGCTGGCTGTACTTTGTATGTCAAATCTAAGCTTCACTGGG
CTTTGCTTTGTATGCACTCAGGACGATATAACTCTTGCACAATTACCATTGAGACTTGAA
GACTGATACTTGAGCTTTGTTGTTTTGACTATAGGATTTCCGTGGAGTTGTCCCATCGTA
CAAAATACAACAAGTTGACACAACAGGTGCTGGTGATGCATTTGTTGGTGCTCTGCTCCG
AAAAATTGTCCAGGATCCATCATCACTGCAAGTAAGCTTGCCTACAAACACTTCCTTCAG
CATTACTCTACTAGTTTCAATCTAGATCTGTATAACCCATGCCCTTTTTCGTGCGTAGAA
GTTTGTGGCTCACTAAATCCATATCTACTGGTTGCTGCAGGATCAGGAAAAGCTCGAGGA
GGCGATTAAATTTGCCAATGCGTGTGGAGCAATCACCACCACAAGGAAAGGGGCAATCCC
TTCATTGCCCACAGAAATTGAGGTCTTGCAGCTGATGGAGAATGCATAGATGCTTATGAT
TTCGCTAGCTTGTAATTCTGGAAGTTATATTGTACGCTGATGGAGAATATTCAGTTGTAG
TGGATGATATCTTGTACTACCAGCCATAAATGGAATCTTGATCCAGAAATTCTGCCAGAC
GGCTCTCTATGATCTCTCTCTCTTCCATTCCCGAGCTTCTTTCAGACGTGAAACGGAGAG
AGGTTATGTTATCTGTAATCCTACAGTGCTGTTGCTGAGTCTGTAGGCTTTCTTGTTTAG
TTGAGGCAGGTCCAGAATCACATGGGTAGTATAGAGGAAAAAGTTTATTTCAAACCTTAA
ATTTATAAAGGTCGGGCGAAATGAACCCTCAAGTTAAAAATCATGGTTGATTGTATCCTG
ATAGTCTAAATCAAACCCTCACATTGTTTTAGGTATAAAAAACCCTGATAGTCTAAATCA
AACCCTCACATTGTTTTAGGTATAAAAAACCCTGATAGTCTAAATCAAACCCTCACATTG
TTTTAGGTATAAAAACACTGACGTGGTAAGGATTCGTTTGATGGCCGGCCTGCCTGCCGC
ACACCCTTCTGTCAACCATCCAAAAATATGCAATCACGGGAACCGAACTCACGGCGCACA
AATCATGTGCTAGAACGGCTACAACTGTATCATTCGAGTGCTAGTGATTGAATGCAGCGT
GCACTATTTAAGAACATTTCTAGCCGCGCTATTTGAATTAAAACAACTTCACTAATTTTG
AGAAAGAAAAATCACTAATTGACTGGACCAGTTGACTGTTCAACATATATGTGTATGTTT
TTTGAAAAATCAGGAATTTAAAATATAAAGTAAAAAAAGTTCACGGTTTAAAAAAGGGTG
ATGAAATTTAAAATAAAAACTCACAAAATGATTGGTCTAGGTTGTCTGCAAAATTAAAAA
GTTCACTGATTTTGAGAAAATGTTCATCGATTTTCTTTAAATGTGAATTTGAAAACGTTC
ATCATTTTGGAAAAAAGTTCATAAAAAGTGAAAAAGTTCATATTTTTTATTTAAAAGGTC
ATCAATTTATAAAAAAATCATCAATTCTGAGGAAAAAAACATAAATATTGAAAAAGTTTG
AACAATAAATATTTTAGTAGGAAATAGCAAACGAAAAAAACTATAAATATTTTATGTTGA
ACAATTTTTTAATATGCATTGAACATTTATTTTAAACTACTTGTGATTTTTCTAAAATTT
ATTAATTTGTTCAAATGCATGAATGTTTTGCCAAATTCATGAATATATTTTTTTATTTCA
GATGGACAGCGAACTAGGCGGGTTTAGACTTTTTCCCCGCACGCGCAGCACAACCAACCC
CGACCCGTTGTGTGTAAAAAACAATCTCAGCCATCCTTTGCTATCCCGGTTTGATAAAAA
ATATCAGGGTTGGATTATACCGGAATTACATAATTGAGGATACAATCGATCGGGATTTTA
ATTTTGAAATTCATTTCGTCGAACCTCTACGAGTTCAGGGTTTAAAATGATTTTGTTCCC
TAGTATAGGCGTATTAGAATCTCAAAATGTTCTATTGGAACCGTACGTGCCTCTTTCGGG
TAGTATTGGTTTCGATGCTGGTATTAAGCTTTGCTGTGATTTGAACTTAGTCGTCAATCA
CCTTATGTTTATGTTTAGGAACGGAAGGAAGGAGTAGTATTTGGGGCCAATAATTAGCCC
TCGTGGAAAACTCTTGCGTATCATGTGTGGATGCATCACCCCGAACGCCGTCTCATCCGG
TTAAATAAACACAAAGACGTGGAGAGACGGGCAGAGAGTCAACACAATGTCGACCCGCCC
CCTCTCTCGCGCAGTCGCCTTCTCTCCTGCCAAGGGCACGGAGCGTGTTCTTCCATAAAA
GAAAGCAAAGCCGGCCCCCGTCCCATGCCCAGACTGCCAGACAGAAGAGCAAGCAATCAA
GCAAGCAAGCAGGCAGGCAGACAGGCATGAGGAGGAGAGGAGGAGGCGGCAGCGCCCCGC
GCCTGCCCTTGCTCCTGCTCGCCCTCGCCGTCGCCGTCGCCGCGTGCTGGGCCGGACGCG
CCGACGGGCACGGCGCGCACCCGCTGTCGCGGATCTCCATACACCGCGCCCGCGTCGCCC
TGGACGCGTCCGCCGCCGTGCGCGCGTCGCCCGACCTCCTCGGTTCGCGGGTGCGTACCA
GCTTCCACCTTCCTCCTGCACCCCCCTTTCCTTCCATTCGCCTTTTATTACATCCCTTGT
AGCAGCAGGCGCACGGACCTAGCCCGCTGCAAACTGGTTCACTCCATGCCCGCACTTTCT
CACCTTCTTTCATTCCGGTAGGTACGTACGTACGTAAGTTAGCAGCCGCTTTAGCTCTAG
CTCAAGCACGTAACTCCTCGCCGTCCTGCGCGGCCGGCCGGCCGGCAGAGCTCAACTCTC
CCAAGCTTATCTGGGGCGTTCCTGCGCAGTCAAGCGCGTCGCTTTCGTTCCCGCGCGCCC
TGGCATTGGCATGCATGCTAGCTCGGCCAGTTGGCCCAGCACATCGCACGCTACGCACAA
GCGGCCACTTGGCCAGTCGTCCTGCTTGCTTGGCCGGGCGGCCGGCCGTTCTCACGACGC
ACCGTGGCCAATCGCCTCGGGACAAAGTGCCAAAGCCCGCGGTGGGTGGCGACATGACAT
CCAAGCGGATGATCGATCGATCATGGGTGTCCAGTGTCCATTATCCAAGTCAAGTCAACC
CATGAACCGAGGGGGATGGCGCTGTACGTACGCGTGCTAGTGCGGCCACCTCAGCCTTCA
CACTGTGACCACATGCCATGTGCCGACTGCCGCCGGTCAAACTGATGTTAGTACATTCCA
TGGAATATGCACGCGTGATCACTCGGGCTGATTCCCGCTGGCCGTATTGCTTGGTCCTTG
CTTTTTTTTTTTCCTCCTGCATGTAACCAAAAAAAGAAAGAAAAAAACTGACACGATGTT
GTGGGCGACAGGGCGAAGATACGGCTTGGGTGACCGTAGAATTCAAAATTCCCCGCGCAA
GCGACGGCGACTGGATCGGGGTCTTCTCCCCTTCCAATTTCAAGTATGAACTACTACTAG
TACTAGTACTAGTACAGTTTCTCCTCTGAAGAATGCTCAGATTTTAAACCGTGGTCCGAA
TGACCAAGTGGTGTCCCTGATCTGATTACTTCTTGCTCTTCTCCTGCAGCGCGTCCACAT
GCCCTGGTTCCCACGGGTCGGGCCCTGGCCCTGCGATATGCTCGGCGCCAATAAAGGTCC
GTGCCACACACATTGAGCAGAGCAATCCTCACATCGTTCAGGGTTTTATATAAGTTGGAT
GGACGCCTTTTCTTTTTGTTGGTTTCAGTATCAGTTTGCGAACTACTCGTCAGCTTATAA
CAAGTCAGGGAAAGGGGCTCTCAGGTTCCAGCTGATCAACCAGCGGCAGGACTTTTCCCT
TGCGCTGTTCACCGGTGGACTCTCAAACGTGAGTCACTAACACACCACATTCTGCTATTC
TATCCGGTTACCATCATCCACAAGAACACACTGACTTCATCTAACCGATATGCAGCCAAC
GCTGGTCGCGGTGTCCAACAGGATCGCCTTCGCCAACCCGAAAGCCCCGGTTTACCCACG
CCTAGCGCTCGGGAAAACATGGAACGAGGTGGGTTTTTTTTTCATGTCAATTGCTGCTTA
CGTTTCTATATCTGCTGACCGCTGTTGAAACTTACCTGAACCGTGGGTTTCTGCTATGCA
ACGCCAGATGACTGTCACATGGACAAGTGGCTATGGCACGAGTGAGGCACATCCCTTCGT
CCAGTGGGGAATGAAAGGGAGCTCTCCCGTGCACGCACCAGCTGACACTGTCACCTTTGG
TCGTGAGAGCCTCTGTGGTAAGGCTTCGCATTTCAAAAATTTAGACTCTGGTTTGAAGTT
TGAACTGGTTTCATTCAGTATGTATACCCATAATATGAGGCCATGGCATGTACCATGGGT
GTATGTGTTTGACGTTTACCTGTATATCCATGACCATGGTTCTGAATGTTCTTATGCCTG
ATTCATCTCCCTCTGCTTTTGGCTGTCCAGGAGAACCTGCTCGTAGTGTCGGTTGGAGGG
ATCCAGGCTTCATACACACAGCTTTCCTCAAGAATCTATCGCCAGAGAAAGAGTAAATTT
CAGTCCTCTGTCCTACAGAAAATTGTCTCCATTGTGAGTAATACTGGTCTGACAATACAA
TCTCTCACTTGCAGATACTACTACAGAATCGGACACATGCTCCATGATGGAAAGGTTATA
TGGGGCAAGCCTAAATCCTTCAGAGCACCTCCTTATCCTGGGCAAAAGTCACTGCAGAGG
GTCGTTATTTTTGGCGACATGGGAAAGGTAAACATATGACATCACATACAGATCAATCTA
GATTTCTGTATGTGAAGTGTAGATTTATTACATGACCATACAGATTTTAGGTGTTCCAAA
TGGACGACCCTTATGAATTTAGACATGCTGCCCTGGTTTATAGGACGAGAGGGACGGAAG
CAACGAGTACCAGAACTACCAGCCTGCGTCACTCAACACCACCGACGCGCTCATCAGGGA
CCTCGACAACACCGACATGGTCTTCCACATCGGCGACATCTCCTACGCCAACGGCTATCT
GTCGCAGTGGGATCAGTTCACGCAGCAGGTCGAGCCCATCACATCCCGAGTGCCCTACAT
GCTCGCAAGGTATGCAGGTTCATTCATCCCGTTTTACAAACAAACAATCCCCGAAGAGCT
AGCGTTTCCTGAATCTGTTCACTCATAATAAGTTGGAACCTGTGATCCATCGACGTTGCA
GCGGGAACCACGAGCGAGATTTCCCCAACAGCGGGTCGCTGTACAACGGCACGGACTCCG
GCGGGGAGTGCGGCGTGCCGGCCGAGGCCATGTACTACGCGCCGACGGAGAAGAGGGACA
ACTACTGGTACGCCATGGACTACGGGATGTTCCGGTTCTGCGTGGCGGACAGCGAGCACG
ACTGGCGGGAGGGCACGGAGCAGTACAGGTTCCTGGACCGCTGCCTGGGCAGCGTCGACC
GGGCGAGGCAGCCGTGGCTGGTCTTCATCGCGCACCGTGTCCTCGGCTACTCCTCCGGCT
TCTTCTACGGCTACGACGGGGCCTTCGCGGAGCCCATGGCGCGGCGGAGCCTGGAGGGGC
TGTGGCGGCGCCACCGGGTGGACGTCGCCTTCTACGGCCACGTCCACCAGTACGAGCGGA
CGTGCCCCGTCTACCAGGAGAGGTGCGTGCCGGACGGGCGCGGCACCGTTCACGTCGTCG
TCGGGGGCGGCGGCAGCCACCTGAGCAACTTCACCGCCGTCGCCCCGCCCTGGAGCGTGT
ACCGGGAGATGGACTATGGGTTCGGCAAGCTCACGGCGTCCGACGCCAGGTCTCTCCAGT
TTGAGTACAGGCGCTCTAGCGACGGCAAGGTGTACGACAGCTTCACCCTGCACAGGGACT
GAGTAGCTGTATCCTGTGGCTTCTCACCCATAAACTGAGATGAACACGTCCGTGCATAAT
TTCTCCTACTTCTACTTTTCTAAATAAAGGGCAAACAAATTCTCTAGGAGTTTAGTCACG
TACATAAGATACCAAGTTAAAAAAAAAGATAAACCTGGCCTATACATCTGGTCGATACAT
GCAGCCATTTTATTAATGCGGATGCTACAAATCGTCGAGCAGCTACCATGTAGTCCCATG
CAGCAGCTCCATGGTAGCATCAAACATCGCTCGACGGAGCTCCATTGCAGCACCGATGAA
GCTTCAACACCCCCCGCGATGCTTCATCAAAACTCTGACGTGCTACATTGCAACTCCGGT
AATGCTTAAATGCATCTCCAGCGGCGCTTCGTTGCAACCACGCACGCTTCATTACAACTT
CGGCGAGCCATCTCTGCTTCATCTGTTGTTGCGTCCTGCCGGCCCTCCTTCAGCACCGCA
CCCTTGCAGCACCAGCGGAGCACCGACGTCCCGATGCGCATCGACGGAGCTCCGGTGCCC
GATGCAACACCGACAGAGAGCTCAACGCCCCTGATGCAGTGGCGGTGGCAGGATCCAATA
TTTGTGATGTCACATTAGCTTGTGTAATCAGCTTCCTGAAGTAGTTTGTTCAGTGGTGTA
ATATGCATTGCCTATAGTGACTTGATTTACCAATTTCCTGTGTAGTCATATGACTACACA
GCTACAAACGTGGCTTCGCCACTGCCCTGATGGCGATACTGCAACAGGTGGTCACTTGCA
GACTGACGGGGAGCTTTGGATGGCTGCACCGAGGCGTGAAAAAAACTCCAATGCAGCACC
ATCGACGACCACCGCGAAGTTCCATTGCAGCCGCGACGGAGCTCCAGCGACTCCGGCGAC
GTTCCATTGCAGCCGCGCGGAGCTCCAACGACCCCGACATCGCTCTAGTCCAGCCCCGAG
CGCTGCAGCCGCGACAGAGCACCAACGACTCCCCATCGGCGCTCCATTGCAGTGCATGTG
ACGCTGCGCACAAAGACGAGCGAAAACACCGACGCTACAAGGCCGGTGCCGAGTTGAGCT
TGGTTGCTGCCTTGATTCGTCAGGGAAGTAGATGGGACAGGGGAGGGAGAAAGGACATTG
ATTGAGGGAGGAAGGCAAAATTGACAAAAATGACCCCTGGGGGGAAAGAACTCACGGAGT
GACCCCTCGGGGAAAATATGTC