morexGenes - Barley RNA-seq Database

Contig contig_1562526
Source Contig contig_1562526
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_1562526 (9870 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_1562526

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12101	1	1601 bp	MLOC_12101.1	Available	Available	LOC_Os12g13910.1, FRAME:-3, EVALUE:1e-42, 13112.m01481 protein expressed protein
MLOC_12102	4	2240 bp	AK375065	Available	Available	None
CDS Structure of MLOC_12101

CDS Structure of MLOC_12102

Contig Sequence (9870 bp)

>contig_1562526 9870 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCCCCCCCCAAGGCAAGCGAAGGAACATCCACTACCATGAGAAGGCACGGC
CAACCCACTTCTACAAAGTGATTCTTTCCCTGAAGATGAAATGAATCTGGACTTCACAAA
GCACCTTCACATCATCCCTCATGAGTTCAAGCTAAAGATGAACATCGGTTGGGCATGAAG
GGTCACGGTTCGAGTGCCTAACGGTAGGGTCATTAGGATTCATCCCTCTTTGTCGTCGCT
TACCATATCATGATTGATTATATGGTGACCTTCAAACGGTTGACACCTCACACCCTTAAG
ATGATGGTCTTTAATAAGATGACATTAAGGTGGCCACCAAATGCAACAAGATGGTCGTTT
TTAATAAGGTAACATTAAAATGGTCACCAAATGCAGAAGCAACAACGACGCATTTGTCGT
GAACGTCTAGAGAGAGCTCTTGTTGATTGCGATTGTTAGCTCTCTATTACCTCACTACAA
GTGTCTTATAAGTTTCGTATTATGCTAAACTTGTTTGCATGTCATATATTCCCTTTGTTT
TCAAATTTAAGTCTTTTTAAAGATTTTAATAAAAATTATATACAGATGTATATATAGTTT
ATTCATTTAGCTCATATATAGTCCTATATTGAAATCTCTAAAAAAATGAAGGGAGTATAT
GTGTCTTGTTTGTAGGAGTGTGTTGGTAAATTATGAGCTGGACAAGGAACATCAATTGAG
ATAAGTATGCAAAAAAAATAAAGGTACGAGCAATCAAACGCGTTATTATTGTTTGGCTAT
AAATGCTCTAATTTGAGTCTAGGTCCTTGGGACCCTTCCACTGTTAAAAACAAATCTCCT
GTCACTTGCATCTTGGTAAACTATTCTAAACCTTTGTAAACTTTTGTAGGTCTAACATTA
TTATTGCCAAATTAATAGCAGTATCAAAGGCAGACTAACACATGATTTGGCTGGTTCATA
CGCCTCCGTAGAAGGAATGCGTACGTAGTTACGCGCTTGCCTCCTGAGTCAAATGAAGCC
GCCGAGGGAGAGGCTGAGGGTGGCCTGAAGGTCGAGCCGCCAGAGGTAGCCGCCAGCGTC
TAGCCGCCACACGTCGCACGGGGCCACGAGGGAACCTCGGCGAGGGCAGGCGTACGGGAC
GCGCACCCGACAGGTGAAACCGGCACAGGAACCCCACGCCGGCACGGGGGTGCCATCCTT
GGCGGCGAGCACCACCCGCACCTCGGAAGCAGCCGCCGACGGTGCCATGGCCGCGTCGTC
GTCCTCCCTACCGGACACTGTCCGGTTGAAAGCCACGTTGGTCCACGTGACGCGGCCGCA
CTGGTCGGACACGAACGTTGGGGCCTCTTCGCCGCCGCAGACCGCAGCGTACGGCTCCTC
GCCGTGGCGCCAGATGCCTGTAACGTCCTCAACCGTCACCCAGGGCACCGGTTGCCGCAG
GGCCTGCGGCGGCAGGACCAGTCTGGCAACGTGGGCAGGCGCCAGATTCGCCACCGGCGC
CGCCCCACCGAACCCCTCCTGTGCCGGCAGCACAGGCATGAGCGCCAGAGTTGCAGGCAG
CGGTGGAGGAGGCGGCGAGCTGACGGACGTCGTCCCCGACGAGGAGGACGACGGCGAGGA
CAAAGGCTTGTCCTGCACGTAGTCCAACTTTTGCGTCGTCGACGCAGCCGCAGCCGCGGC
CACAGCCACAGCGGCTGACTTCTTGGGCTTTCGTCCCCTCCTCCCAGTACCCCCTGGCCC
TGCAACCGCCTTCCGCTTCCGCTTCTCCTTCCCAGCCGGCACGGGCGTAACCGGCGCAGG
CGTAACCGGCGCAGGCGCCATCGCCGCCGGCTTTGGCGCGATGGGCCTAAACTTCAACAC
GACCTTTCCCAAGTGCCACGCCTGGCCTGCCTGGGCCCCGGCTGCGTACCTCGGCGCCAA
GCAGCACCCTCCCTTCCTCTCCATCATACACTGCAGACCGCACCCCTCCGCGGAACAAGC
AAAGCAGAACGGCTGCGACTAGTCTCAGCTACACACACTGAGTGCTACTTTCTCGGCGCG
GTGCGAGTAGACCACGGCGGCAAGCAGGCTGGTTTTATACAAGACGCACAAGGGACACGC
GTCAGGGAGCACAGGTGTCGCGGGTGGGACGCGGGCTATGATTGGTCTCGCCCCAACACC
TGGCCCCCGACGGGCAGCGGCAGCACGTGAAAGGCCGCGACCCTATTGGGCGCGCTCGCC
ATGGCTGCCGTGGCACGCAAACGGATTAAATATCTGCTAGGAGTACCAGACTAGCCACTG
AGACAAGAGATTTGCAGTACTGGCGCCACGTGTCCCTTGCTTGCTGCCCCATCCGTAGAG
CACAAGAGAGCGCAAAAGGCGTGATTCGCTTCGGCTACACGTACGACCACGCGTACCTGA
CTGAGACGTGGGCCTGGCCGAGCTGTAAGGTCCATATGTCTGTGGAATCAAGTTTGAGGT
ATTGTGTGGTTTGTTGTTGCAGGTAAAGGTGCCGGTGGTCGGGTGGGTAGAGTGGAGGTG
AGGATTTTGGACCAATGGGAGTGCGTTGAGTGTGCAGCCCTTTATTGGTGGGGAGGGAAC
ACGTAGAGCGGTCAGAGGGACCGTCTGGAAGACCGATGGCTCGTGGCCCCATCGCTGCTG
CTTTCTCTCAGGGAAAGGAACCGGGCACCAAAACTACTAGCCCCACACAACACAACATGG
TTTAAGTCTTTTTTTTTTATAGATACAATAGAGATCGCTCACATATACACATACATATTT
TTCACATATACATACATATTTTTTATGCATGGGCGCATATCCCATCTCTATAAACACCTT
TAAAAGATTGAACCAACACGACACGCACACCTAATATCAACTTTAAAACTTCAACTCTGA
ACGGCAAAGGTATCACTGTCCTCCTAACCAACCATCCACCATCCAACCGCAGGCTGGTTT
GTAACATGGTTGTGACTAGTGAAAGTGAAGTTGTGACGTGTGTGCCTTAGACACAGGCGT
AAGCATTGCAACTTCCTGCTTGTCAGCAAATTCAAAGCTACCTTGCCCTTGACCCACACT
GCCTTAAATTTTACTCAGTTTTCCATAATCAACAAATAGGCTCACAAATAGGGTTTAGGA
AATGTTGCTTCTCTATCGAGGGGAGATGCAAAAGCATTTGCCTCCGGTTTCGGAACGGCA
ACTTCCAAAAGGGCATACATAAAAAGAAGGGTAGTTCTGTAACTTTTAATCAGCACAAAG
TCTTCATTGTTAAGTTACAGCAGGCAAACAGCCTATTCTATAAAGAGTTACAAACTTGAG
AAGCACAGTTAACAGCATACAAGATACAACTAAGACAACCACAAATCGCAAACCTGCCTT
TTGTTAGCTACCTTCTTGTCATGTGGTTATCTGAACCATCCTGTCCTCTATAAAAATCTA
GCAACAGAATGTAGAAGTCACTATTTTACAAGTCATTTCCAGAGCTTGACAAGCCTGTCA
TGACTAACTGAGGCAACCTTGCCTGTTGCGCTCGACGCTGCTAGGGCTGCAATTAAACCG
TCATGAGCATTGTTCAAGGTCATGGCATTCTTCTCCCTGATGTCCCAAAGTTCCAACGAC
TGCACGGCACAGAGTATATCAACGCAGACACACTATCAGCATGCTCACAAAATGGAGTTT
TTGCACTCAAACAATAAAATCGAAAAAATCAGTAACTATTTCAGAAGAAAACAAAACTGT
TCTTTTTGGCAACAAATATTGTTGAATGTGAAGTTTCACGAATAAAGCATTCCTACTGTT
CATATTGTTAAATATTGTTGAATGCGGGAAGAAAACTAAGCTCAAGCCCAAATTCAATTA
ATTTTCTAGTTCTTTTTTATTTTATTTTCCTGTTCATATAGGAGCATTTGGGCTTGGGAT
TAGAAGGGCACTTTCAAAACTTACCTCGTAACAACCAATGACTAGCAAGGAAGGGTGAGC
TGGATGGAAAACACATGTTTGGAACTTGTTTCCACTGCAGTTCAACTCATTCACAAATTC
ACCGTCATGCCCAGAAGTAAATGACCATATTCTAACAGCATCTTCACTGACAGAAGCGAG
ATAATCACCCGCAGAGTCCCAACAAACTGACTGAATGTCCTTTGCATGACCCTGCATAGA
TGAACAGAACTTCCAACTCAATAATCCACCACCACTACTGGACCACAAGATACTTGCAAC
TTCTTTTTTGAGATGGAAAAAACATACTCCGTCCGTCCCAAAATAAGCGTCGCTGCTTTA
GTATAAAATTTGTACTAACTTAGTACTAAATTTGCGTCACTTATTTTGGGACAGAGGGAG
TATAAGTTAACATAATTAAGGGTTACATCAGATCACTAGAGGAAATACCATTTGAATTGT
AATCTTTGGCTCCTTTGATTTGATATATATATATATAGGAGATGATTATTAACAAAGAGG
AACTTATTCTGGGTGCACTAGTCTGACAGTCGAACATACTGATTAAAGCCTCCTAGTACC
AAGTGCATATAGTGAACCTTCTTTGTCCAATGCTATCTTAGACACTTGCATGCTTTTACA
CTGGAGAAACTAAAGACATGGCTCGGCATAACTTGCACACTAATGAGTTCTCCGACAGAT
GATGCAAAAGTCACGGTGCCCAAAAAACTGCTGTTTGGGGCACTTTGGGCCAAAGAACCA
GCTCCAGCAGATGATGTATCTCTATTTGGTGATAAAAATAAAATGGGCAGCTCAAAATTT
CAGCCCCAAGTGCTGCCCGGAAACCAAAACTCTGCGGCGGAAACCTAACCGCCACGCTGA
AACTTCCCAGCCATACGACCATCGCCCAATTCCGACGTATCCTCGCACCATGCCGCCGCT
GCCGCCACTCCCACGACGGACCCCGGACCCTCAGCCACCCCGCCGCTCGTTCTCGTCGGC
CAAGAAAACTGCCACGACCTCCGCCGCTTCAGCCGATTCCGATGGATTCAGGCCACATTC
CCCCACCCCTTCCACCACCGAAGATGGTCGCCGCCTCCACTGTCGGCTGCTGAGGTCGAT
TAGTGGCCTGGTGACCACCAATCAACCGACCACCGCCGAGCGGTCGCGGCCCCTTTAGGA
GCTCTCGGGGCTCGAACAGTGTGCTGCCGCCAGAGTTGGCCTCACCCCCGACTCCTGGTC
CCTAGCGTCTCCTGTTCTAGGCGGCCCGGCGACCTCCCCCGGTCGAAATCGAGCTCGGCT
CCCGATGACCGCCAAATCGGCCTCCCCGCCGTTAGATCTCATGTTTCAATTGCTTTCCAT
TTTATGTCATCTGGAAAAGCAACAGCAGCCACGATGCCCTAAAACCTTCTCTCTCCTACC
CTATAATCGTATTTTCGAGATGCTCTTGTGAGAGGATGTAAATATGTTCTTAAATGCTCT
CAACAAATTTTGAAGCTGATCTTTAGGTGACAAACCTGTAAAGGGTTTCTACAAGCATGC
TGCGTCTCCCCATCAAGTATGTAGATAGCCTTCTCAGATGCAGCTGCTAGATATTTTCCT
TTGCGGGGTTGAAATCTCATCTGAGTGACACCTCCCTGCGAAGATAACAATATGAGAGGA
AACAAAATCAAGCATCAAAATTTTATTATTTGAGCAGAAAATTGTGCAGCAAGTGAAAAT
TATAACTGGCTAGGCAAATACCTTAAAAACCTTGACACAGGTCAGGCAACTACCATTATT
AATGCTCCAACTGCGGACTTCCCCATCACTATCACAGGAGCAAATAATATCTTCTTTGTT
GGGATGGAAGTCAAGTGACATCACAGATGCTGAATGACCCGTGAAAGTACGGAGCGAATA
GTCAGTCTGCACAGACAAATCAGTTAAGTCACAACAAACTAAGATAGCAGCACTTGTAAT
GCAATATCTTTGTATGAGAAATACATTGAAAAGAGGAAACAAATGCTAAGGAGTATACAA
AGGAGGAAACAAATGTTAAGGAGTATACATTGTCAGCATCCCAAACCCGTACGGTTTTGT
CGAAGGAAGATGTAGCAAGGCGGGACATGCTTGGGCTAAATCTAACATCAGTTATCAGAA
ACGAATGCTCTTCTAATGAGGATTTAGGCTTCAGGGGATCTGTACACCATAAAACAACCT
GCAGAAGAGAAGGCATGTGATTGAAGGTTTTCTGACAGTGGTAGAAGTATAGCTACTTCT
GCATCAACAGCCACACCTTTTTATCATGACCACCAGTAGCAAGCAATTTGCCATCGGATG
AGAAGTGGCAACAAACAACTTTACTTGCACTTGCACGTGCTTTTGCAACCTCAGCAAAGC
CAAACCCTGCAACAAACAGATCTTGAGAAGATTGCAGCGGTTGTGCGTCTTAAGAAGATA
TGATACCTCTACTTGACACCTTTTTTCCTATTTTTAAATAAAAACTGATAAAGCCACCTG
GCGAGTAGGAATAGTTTTGAGTTTTTGGTCTGTTTTCTTTTGATAATCAGACCTCTAATG
AATTTTTGCTACCAGGAGAAGGGGATGACCATGTTGATGGGGTCTATCTAAATATAGAGG
AACCTACAGGGCTGATTACTCGCTCACTCCATTGTGATGACAATCACACCGATATTCTTT
ATTATTTCTAAATATATAGATAACTGCCATCTGCCGGCATAATAAGGATTGACACTAACA
ACAGCCCCTTTAATACTAGACGACAAGTTTTAAATCAGACTGGACTGAACAAAGAAAGAT
CTTTCCACACAAGAGTGGAAGGGATCCTTTATAAATAGTTCATAGCTCCAATCAAGCTTT
CTCCGCTGTCTAGGATCGTTAGTGCTATAGTGAAGACACTTTTTTCAAATAAGAATGGTG
GTCACATTCCCTTTCTGATGTAGTCATTGAGGATCTCAAAGACAGGGACAGCAAAAATGT
GTCAATAATGGCAACGTTGTGCATAAAAAATGAAAATGTAGAACCTTGGGACAGCTAAGG
CAATTTCAGCGGTAGCATCTTTCATGAAGTTACAAACTGAATTCCATGAAGTGCTAATCT
AACAATCATTGTGCTTCTTTTGATTCTTTCCTAATGTCTTCCCACAAAGAGATCATTTCA
CCAAGAGATATATCTCTCCACGAAGAGACATATTTTCATCAATGGACGTGTCTTTCCACA
AACAGATATATGTTAAACAAGGGACATGTCTTTCCATGAAGAGACCTCTTTTCACCCAGA
GATGTGTCTTTTCACGAAGAGCCGTCCTTTCACCAGCACATGTGTTCTCTGATCAAAGGG
CATGTTGTTCATAAGCCCCAAACCGCTAAGATCCAACTGACTTGAGTAATTCCCAATACA
TACAGATGACTGTTCTTTTTAAAGTGATGTGGCCTAAGGTGGACGCTGCATTAGGAGTCA
GTTTTAGAATAAAGAGATGTGGAAAATACTCTCCCCCTTTCCATATGGAACCAAGGCCCC
TTGACTTTATCAATGGTGCCATTGTTCGCCATGCCTTCACCCCAACCCCTTCCCCATAAG
ATAGTATAGAGGATGGTATGATGTTCAATGTTCACGCTGGATTGGCAGAGGAATTCGGCG
GGCTAGTACCAAGTCTTCAATCTCTGCCAGAAAAGCAGGAGATGTAGCCACGGGGCACAA
CTACTTCTGTGCACCACACCTTGGGGACCTCAATGCCTACCACTTGGGAGGAGGGGGAGG
TGTCGATGTTAGTATATCTTGTAGTTCAGTGGCAGCAAGCTAGCAAGAAGGTCAACAGTA
GCAGGAGATGACATGATCAAGGACATGCAACAGCAAGCATACCAGTTATTCTCTTGACTC
AACCTATGTCTACCCAATCCCTAGAAGCCATCTGGCTACCTTTAGCACTGTAGTTCTTAG
AATAAGGATTGTGGACAATGTACCGAAAATAGGCATGCAATCATCAATGAGGGCTATTTA
TCAGGCTACATTACCAGGTAACAGAATACACAGATTGAACTTAACAAGGACCAGTTATCA
GCAGGACTAAAAAGCATACCTTTACTGGCATCCATGCAGCGTCCCAAGGTATCCCTGGGA
TCCATGTCATCCTGTGACAGAAAAGATTCAACATTTTCATCCAACCCTTCTTCCAGCAAA
CGGTCCACATCACCCTGTAATGAAGTGTTTTTGTTATTATACTGCCAAAAAAAAAAACTT
TGATCAAACATATGAATACCAGTGGGTTCGCTGTAGATGTCAAGCTTCCAGTGCCATCAG
AGCCAAACATTACCAAGGGTTTTGCTGAAACACCGTTCTGCTGAAGTTGTGGTACTGGCA
TCGGATCACCTGGTGTATGAGTGGAAGGTGTTGAGGGTGCAGAACCTGGAGACGGGCCAG
CAGTATTTCCTGTTCCTGAACTATTAGCCCTACCCGAGGAAGAGCCAGGCTTCTTTCTTT
TCTTCGTTGACTGAACAACAAATAGTATTGTTTGTGTAAATGAACAACTGAGATCTAGTA
TATCGGTCACTTCACTAATCTAAAGCAGTGGGAAGCAAAAATGAAACAACGGTTTTGGAA
GTAAACCAGAGATAACCAAGAGGTTACCACCGGTCTCCTATGATCCATTCCAGTTTGCTA
TATTTTTTTTACACATTTTCTTGTCGAAGTACTGTTATATGAACACTAATATCATGTTAC
ATCTTTACTAGTCTGAAAGCACCACTTTCTGGACTGATATATTTTTACAGTATTCTTTGC
TCTGCACTACATCTTTACTAGTCTGAAAGCACCACATTCCAGACTGATATATTTTAAGTC
TGGTGAGGTTTATGTTTAGCTGGTTGGTCATATTTTTGTCACTGCCGGGAAGTAGATCTA
AACTCATCAACAACAACAAATGGAAGGTCAGCAGTAACAGTGAGGGAGACCAGGAGCAGT
AATAGCTCAGTCGATTTAGTGCTATAGATAAATGAACTGTAGTGCAGAGCAAAGAATAAA
ATTGTATGTTTTTATAAATCCTAGAAGATGGATCATGGAGCTAGACACAATGGTGTAGGC
ATGACCAGATAATGTACCACAGCAAATTTAGCTTGGTTGTATATTGTCTGAGAATACATT
ATCTGGCAAGAAGATTTGAAAGGAAGTTATCAACACATTCAGATCTTATGTATATACTAT
GAACGTTTAATGTTTAATGCAAGATAACCATAAAAGGCAGTTCTGTGCAGCAAAAGTTTA
CTTGATCAGTGGCCCCAAAAGAATTTGGCATGCCCCCATCAACAGGCATATTTCCAGTTC
CTGGCTTTTCTTGTTGGAGAAGCTGATTTGAGCTCTGAGACTGCTGACTGGAGACAGCCT
GATGGTGCTGCTGTTGGCTATTGCTTTGTTGTTGTAATAGTTGCTGCTGTTGCTGCTGGT
GGTGGTGTGCATTAGCAATTTTCTTCTACTAGACAGAAAATTCTACATAAGAACATGGCA
GCAGAAAAAAAAAAGGCTAGAAGAATAACCCAAAGGCATCTCTACAAGTTGAATCATCGA
AGACAAATGTAACATAAATTAGGTCAACTTATATGCAAAAAGGAAGCATATATGAGTGGA
ATATAAAACAGAGTTGGAAGATAGAGAACTGTAAAATTAATACCATAGAAGTATAAATCC
AGGAACTAGAAAAATTTATGAACATTATGAGTTGTCTTTGCACTATTAAAACATTGGCCT
TACTATGTCAAGCACCTTAAGGGGAATTAGATGTTTAGGCAGTCGGGTAAAATGGGGAAC
ATAAAACAACTCACATTCATTGTTTTGTCATTACAGAAAATGCCAAAATATAATGTCAGG
CAACAAAAATACGTTACGAACAGATTGAGACGCTGACATTTTGCCATGATGTTCTATCTT
CTATGATCACCACCCCCCCCCCCCCCCCCC