Map Locations of contig_1562510 (3584 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1562510

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12095 3 1379 bp AK371666 Available Available None





CDS Structure of MLOC_12095






Contig Sequence (3584 bp)

>contig_1562510 3584 assembly3_WGSMorex_rbca.fasta
ATTAACTTGATTTTAGTCTTTTTAGTACTTGAATCCAAGCATGGATGAGGCTAGCAAGTT
TTAGNNNNNNTACTTTTAGTCATGGGACTAAAACATATCCAAGCACCCTCTTACTGGGGC
GGGCGACATGACCCAGCGGCATCGTTTTGCTACAAACAACAAGGTGTTTTGTTGAACTAG
CGACACCAATTGCTGGAACCGTGCACACAGGAGCTGCAAACATACACCCACGGACTGCAC
CTGCCGCCGACGATGTCGGCGAAAATGTTACAACCATGTATCATGGAAGCTACAACCATC
TCTCGGAAAAAGCTACAACGATGCACACGGGAGCTACAACCGGCAACGCCATCGTCGGGA
AAATGCTTCAACCGTGTCCCGCACAAGCTACATCCACATACGTCACAGCTGCAATCATTT
CGGTGTTGCTACAACAGTGTCACCAGAGCTACAACCGGCGACGTTGTCATCACAAAAATG
CATGAACCGTGTAGTGAAGAAGTTACATCCATGCGCAGCAGAGGTGCAAGCATTTTGTGG
CAACGCTACAGCCGTGTTGCCAGAGCTGCGATGCAGGGCAAGCCATGATGCTGACGACCA
TCGGTGTGTGGAGCTTCGCGACCAACGCCGCCGCTATCATGATTCCCGTATGATGGAACC
AAGCGGCAACAGAGTTACAACCTTGACAACAAAAACTATTTTTGTAAAACCAGGAAGGAT
GTGTTTCAATCGCTACCGGTTATGGAAGCGACAAGCCTGCCTGCGGTGTTGGTTCGAGGA
CTACAAGGCAGCAGCAACGGCAACGAGTTGTGGCGCGTGAGGTGGATGTAGCCTACAACG
CAGAATAAGGACCCACGCAGGTCTATTTCTGTTACGGGACGAAGCTATTTGAAGAAGAAG
ATAAGATGACGTGGGTTGCAGGATCGGGCGACTACAGAATGCCTAATATGACACTGGCCG
AACCCTTGGGCCGGTCCGCCGGCGCCTGCCGCCTAGCGATCCCCTTTAATAAAAGGTTTT
CAGAGGGCTTCACACCATCTACCCATCAACACCATTCACAATTTCCCTAAAAAAACTACT
ACAATTCACCGTTGCTGACCTTGTTTAAAACTGTCAGCCATCCCCGACACCACTTAACAC
ACGTGCTGCAGGTGCAGGACAGCAACCTCCTGCCAGAAAATCTATCCACGGAATCTGCAC
CTAGTGTCATACTCTCTGTGTAAAAAAATATAAGAGCATTTAAATCATTACTTTAATAAT
CTAAACATTTTTATATTTTTTTACGAAGGGAATACTTATAACCATACGAACATGAGGAAT
ACTTATAACCATACGAACATGTCCAATCAATCAATAATCTACCGCTCGCCATTGTTGACC
CAAAACTGCCAACAAAACGGTCCCTCCCAACCACATTGCAGTTGGCACATGCTGGCCCGA
GACGGCTAACCGCCAGGATGCGTGCAGCTGCTTGTTGTTCCCTCCAATAATTGGAGCAGC
AAACTTTACAGGATCGAGAAAGGTTTTCCAAGCCAACAGCACGCGCTATTCTTCTCACCA
CTTTTGTTATCATAGGTATATGAATAATGTAGCATTCATACAAAGCACAAGCCACTCGCT
TTTCAGTTCACTGGTCTGCAATGCACCGGCAGCACCGTAAGACGAGGAATATCACAGCCA
ATCTGCATACCACTTCCAGAAAACGCCATCAAGAATCAGACCAGAGCCATCATGCATGTC
TTGCCATGCCATGTCATGCCATGATGCCCATGGCTGTGATCGGAGCGATCCGCACACTAT
GTTCAACTCCTCCTCCCCCATCTTCAGACAACAGCTACCCTTCATACGGCCTGCAGACCG
AGCGTCCGGTCCATCCACCTGATGATGTCGGCGGCGATCTCGTCGCGCTCGGGTTCGAAG
AGCAGGTCGTGCAGGAACCCCTCGTACAGCCGCAGGTCCTTGTGCCTCGACGCCGCCTCC
CTGTAGAGCTCCTGCGAGGCCAGCGGGTCCGTCACCCGGTCCGCCGTGCCGTGCAGGACT
ACAAACGGGACAGTCACCTTCTTCAGGTTGTGCAGCAGGTAGGAGGAGATGCGCAGGATC
TCGTGGCCCGTACGGACCCTGATCGGCCCCGTGTAGACCAGCGGGTCAGAGTACTTTGCT
AGCAGCGCCGCAGGGTCGCGGGACACCGGGATGCCCCGCTTGTTGGCTCCCTTGAATTGG
AACTTGGGTGCAATCAGAGAGAATATCGGTGCCACTGCCTGCATTTGATTCAGATGAGTC
TCAGTGATGAAACACGACTTGCCATGCAGGTAAACCAAAAATATATCGCGAATTTTGAAG
TTTTAAATTTTGTGGATGAATTCAAAAGCAGAGCTTCTGAAATAGCTCTACTTTTGATAT
GAGCGTACAATATCAAAAGTTCTCAAATCAGCATAATTTGGAATAATAATAGGAAACCAG
AATAGTTCTATTACCCCGACTATCGGATGCGCTGGTTTTACACGCACAGCTGGTGAAGTC
AGGATGATCCCTTCCAGTCTGGTTCTGATATGGGCGTACAGCGACGCCTGCAAGATGACA
GCTAGTGATGAGCAACCATGAAACAAGTAAGTTAAGCGTTGTTAAATGAGCATCGTTAGC
CAAACCATTTCAACCAGGCTATTTTGTTAATGCTTTGCACCACTCTCCGCCGTCAGGGTA
TCCATTGTTCACAGGCCCAGAGGAGTAGGGTCAGTGTCTAGATCTGGCCTAAATACCGAT
GACAAAAAAGCGATTTAATTCGACAGGCCATACCTTCAAAACAACAGCTCCACCAGTGGA
GTGGCCGAGTAGAAAACAAGGAACATCTGGATTCTCCAGCATAATTTTATCAAGAAGTAC
TTCCTGCTCAGAGATGATAATATTGCATTACATCAGCCATCAGGAACAGTAGCAAGGAAA
AAAATAGTGTGCTATACAAAACAACGTCGACCTTAAAAATATGCTATTACCGTGTTATAG
CATTGCCATTAGCAAGATATTGTACACTGATCAATTTAGCGACACAATTCTCTACACATT
ATACCGTGCTATTAGCGGCGCTATATCGTGCTATTTTTTTCAGTGAACAGAATAGCTTTG
TGCCTTCTATGGAAAAACCTTGAACAGGATGTAGAAGTAGGTGGACAGACAGAGACTTAC
CATGTCTTTTATAACATAGTCCAGAGAAGGAACATAACCGTGCAGACCATCACTCCCACC
ATGACCTGTTATGCAGAAGCTCAAGTTAGCCTGTTGATGTTGAAACGAATGCAAAATTCA
GTAGGCATGCTCACACCTCACAGGAACAAAGAGACTGAAAACCATGGATAATTTTCTCGA
AGCACTGCTAGATTCATGGGAATGAGTTGCAAGGTAAGAATCCACAACTATGCGGGTACA
GCATGACAACCTTAGCATCGTTGCTTATATTTTACTACCTCCTATAAAAAAAACTACTAT
CTGGTTCTAAATGTTTGTCATAATATTACCAATACCAGATAGCTAGCTAACACCTAGTTA
GCTTGATACCTACATGATCCACACACACACACACAAAAAAAAAA