morexGenes - Barley RNA-seq Database

Contig contig_1562499

Source Contig contig_1562499

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_1562499 (4453 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_1562499

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12089	1	968 bp	MLOC_12089.1	Available	Available	LOC_Os04g43824.1, FRAME:+2, EVALUE:4e-35, 13104.m04360 protein expressed protein
MLOC_12090	1	895 bp	None	Available	Available	None

CDS Structure of MLOC_12089

CDS Structure of MLOC_12090

Contig Sequence (4453 bp)

>contig_1562499 4453 assembly3_WGSMorex_rbca.fasta
AAAATGTTCATGCATTTCAAGAAATGTCCTAAAATTTTAAGGACGTAATATGATCAGCAT
CCTTTAAGATTATAATTATTATTTTTCCCGTTGCAAGACCCTTTTGCTATGGATCTTAAG
AAAAAGTCGCACGCGCAAGGCGGCTGACGCTACGCGTCTATCAGCCGGCAGGAACGACTC
GTTTCCCTTCTCATTAGAGTGGGGTGGCAAAAAACAGAACCTAGCTGTCCACGGGAAGAA
ATTTCGTACTCCGACTAGTAGTACACATGTGAAGTTCAGATCTGAATACAGCTTCCGAAC
AAAGCCGACGCCATCGACCAAGCGGAGATCCTCTGAAAGATCCGCGCCGATCCCGCAAGG
CACCACGCCCTTCTTCCTCTCGTCAGATAATCCAACACCTCGCCGCTTGTTTCCGGATCT
GAGCGAGGGATCTGCCCGCGTCGGGTCTCTCTTCGGGGAGGATGAACTGGGTCGGGCGCA
AGATCCACCTCTACAATGTCAACATCGGCCTCTACATGCTCGATTGGTGGGAGCGCTACC
TCTTCAGTATCCTTCCACCCCTCGCTCCATGCTTTGCTTTACTGAACTGTTAGAGAATTC
GCCTTTTGCGTTATCTTTTCAGTTGATTTCTGAATCTGACGAAAACCCTGCAGCGGGTGG
TGAGTTCTGTAGCTTATGGGATTTAGGGGTCTTTCTGGCTTTGAATCGCATGCCTTCTGT
GTTAAAGTAGTAGTTATATTTCCCGTCTTGACTAGGATGATTTGTAATTTATATTGTGGT
GAAACAATCTTTGGTGTTTGGTTCTCTTTTGAGTTTATTGATTGAATTGCTGTAATCTAC
TGTAGAACATAATTCGGAAGTTGTGGAATCTAATTAGATTATGCAAGGGTTTTTGTTTAG
TTGTTAGTTGTGTAGAGCCGGTTTGATCCTGCCCTGGCCATACTGTCCAGACTACTACCA
AGCACAGCAGACCCTCCAACCTGTATAATTGACTACTACCAAGTGGCAGTGCAGGACTAT
GCTTGCAGGCCACATGCCTTAACACTTACTGTAAATCTGTCAATCTGCTTCTTCGAACCA
ATTAGATCTTGCGCCTTGCAGAACTATGAAAAAAAACTTATACACTCATGATCATGTGAA
TATCAATAAATAGATATATCACGAGTGAATCATTATAGAGAATGGGATGATACAAAGCCA
AATAATCTTCTCAACTATGACGCGGCAAGCCATTGCCAGAACATGCTAAAGTTATTTGGC
TGCAGCGCAAAATGCATACCATGTCTAAACCGTCATCTCCCATTGTTATTAAATTGACCT
TTAGTATAGTTTGGTTTTCTAGCAAAGGTAACAATACGAACAACTTAAAATAGCAGCGAG
CAGTATAAGCTCAGCGTATCTTTTACACCAGCTAGGAAAGCATTCCTCATACCCTTCTGT
CCAAATTTCTATACAAATTACTCTTGTCTCCATGAATCCAGATAACTCCACCTTCATCTT
ACTGTGATTTTCTTTCAACATCCTCAAAACTATTGAACTATATCCAACCCTAGTTATCTG
GCAACAGATAATGTTGTACTTTTTTTTACTCTCTTCACTCTTCCTGCAACTCTTCCCTCT
TGCAATAATTCGTTATCCCCTCTTTCAAACTTCCAGTTTCAAGTTCTCTGCATGCCAATG
GTTTTTCCCTTTCAAGAAAATGAAAATGGCTTTGTGTCTCACTGCATTGATAGAAAAGAA
GGTTATGTACAGCTATAGAAGTGTCACACTACAAACAACACCAAGCCACTAAGAGCTAGG
CATCATTGGATGTACCGCAGCAATGCCCAATGCGCCCGCCTTTTGCCCACAGACGAACCA
TTGTGCATGCTGTATGTTGCCATCTTGGCAACTTCAGCTCCACCATGTGCTTTACTCATG
CAAAGATATTATGACGTGTCAAGTGTATCCACTCCCTTTCCTATATAATTGTGTACTGTG
GGTATACTGGAACTGTTGAATGTTGTTAGTCGTGAGGGGCATTTATTTTTCTTCCTTTTG
TTCTGTCATCAACTTTGTGGAAATTGGGAAGGTTTTCTGACTGCATAAAAAAGTTGAAAA
GATCTGGACTTTTTCTATTGTATTTGAAGTTTTCAACACTTGAATTGTTTCCAATTACTG
ATGGATCTCAGCAAATCATTCAGGAAAGTTCAAAATATGTTATCACTTAACTGTTACAGA
TACGTTGATGCTTTGCCTTCTCTGGTACATTCTACGGTATCTCACTGGGTTCTTTCAAAG
GTATATATATTCCTTTTAGCCTTGATCTGCTTACATCATTTCACATTTAAGCATGTGCTG
AAGGTTTTTCCAAGTGTCGTGTTTTTATTCCCGTATAAACATCATCTACTACTTACAACT
TACTAGCATTCTCCTTCGGATCAGTTGTTGCAAGAAACTCAGGCCATGTACAATGCAAGG
TGTTTAGAGAGGTGCTTGTGAAAATGAACTGTTTCTTTTCTTAAGCATCGATGGTTATTT
GTATAGCGCAGACACTTACTTAGGCACCTCTGCCATAAAAGAAAGCACCGGTGCTTAAGA
AAAAGCCGGTTTATTTTTACAAGCACATCGCTTAAGCACACCTTGCATTGTACGTGGTCT
CAAGGGGCTATTCAAGCATAAGATCCTTTATATGTTTATATGACTGTAGGAGCCTCTCCT
ACAGTCTCAGTGTTAAGAAAAAAGAGGTCTTTTATGTTATGTCTTCTGCGGACATATGAA
TTTGTAAACATGTGAGTAGTTAAGCCAGCGAATTCAAGTATACAAAGTTACAAACTTCCA
TTGATCATGTTGGTGTGTCCCCATTCTGAAAATGCTGCAACATTTCTAAAATATCTGGTT
CGTTTTAATGTTAGCTGACTTGGCTACTCTGTGTGTTGTAGTAATCTGGAGACCATCCTA
CATGGTGCGAACTATCTTCTACAAGGTAGTTAATCTTCAAAGGCAAAAGCACATATGTTG
ATGGCTTTATGGGATCCCCCCTGTAATCTATGTTTTGATTAGTCTCAGACTGAGAAACTA
GAAAGGAACGGTTTATGTGTTGTTGTGTTTGCAGCCGTTTTTTGTACTGTATGTCTGCAT
TGTCCATGGTTATTGTAATATATTGATGTCGCTGATTCTCAGTTGACTGCCCGGAACTTC
TGTAAATCTAGCCCCGTCGATATTTGCACATCTTAAACCTCAAATTGGAGTCCAACTTTT
AGTCGTTTTTTTTTCATTTTTCTCAGTGGGGTCATGAACTTAGCTATACATTGTCCATAT
GTCTCCCTCTGTATTTGGGAATGTAGCTACTCCATCAGACTAAATCAGCGTCAATTGGTA
TGGATATGAGGTTTTTTTTTTTACCTTATGTGTTGTGGACTTTAAGTAATTTCTCTCTAA
GACATTTTCATTGCTAACTGTAGTTTTGTGTGATTTAATACTGGTACCTTTGCCTTTGTT
GTCGTCTGTGGACAAACTGTGAGAGATCTGATGTTTGCTGACTGATGTATCGATCGCAAT
GAACAAATGATAATTGTTCGATTCATAATCTTTCTGAATCAAAGATGTCTGAAGTCAAAA
ACGACGACCCGTTTTGGTTAGACGTCCAATCGATCAACCTCAAGCCGGTGGTTTCAACGT
CGTTTTCCTTCTCCACGGGGATCCTTCATATGGACGATGACGATCAGAGGAACACACAGC
AAGCTAGTCCAGGCTTATACGTCAGTTTGTTCTGGAGCGTCAACCTTAGCCGCTCAAGCT
GACGATTCCACCTGTCGGGGCACCGCTTGAAGTGCTGGCCTGAGCCTCCGGAAGTCCCCA
GGTTGTGAGCGCTTATCGTTTTGGAGCACGCCGTGCGCGTGACTGTTCCTTCGTTGCGTG
CTGCAGAGCTCCCCTTGGCTCGCTCAGTTCAGCCATGTTCTATCTCGTGATATCGATCCC
GGCGATCCTCCTGCTGCTCGTCCTGGCGCTGGGGTGCTACATGCTCGGCCGGAACCGAGG
CCGGGCCGAGGCGGCGGCGCCGCAGCAGTTCGCGCCACCGGCACCGCCAAAGTAGCAGCG
GCGTGTGTGGAAATCTTGGTCAGTATAAGAGCACATATGTGCCGGCTTCTTCCCCTGCTT
TGCTTCCAGCAGTACTGTAATTTCTTCCTTACTTTTGTCTTGGATGTTCTACCATGTTCT
CTATCTTGCAACGAGTGCCGATGGTTCAGCCTGGATGTCTCCCCTGTAATCTGTAAAGCA
GGAAAATGAGTTTGCTCTTCCTTCGCACTAGCCGGCTGCGCAGTGTTTGAAGTAAAAAGT
AAAGAACGAGAGAGATGAATGAAAGATGATTCATTAGTCTTTATTGATGATAGCAATGGG
GTATTTATACCCGGACGGAAGTACACATATTGCTTGGGAGTCAAGTAAACTTGAAGTTAC
TTAAGGGCCAAGT