morexGenes - Barley RNA-seq Database

Contig contig_1562486

Source Contig contig_1562486

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_1562486 (3998 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_1562486

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_12084	1	1129 bp	AK252423.1	Not available	Available	None
MLOC_12085	1	562 bp	MLOC_12085.1	Available	Available	None

CDS Structure of MLOC_12084

CDS Structure of MLOC_12085

Contig Sequence (3998 bp)

>contig_1562486 3998 assembly3_WGSMorex_rbca.fasta
CAAATAAGGGGCACGGGATTGCGTTTTGGTCAACACGGCACTGAAGCATACGGACACTGC
AAGAACCACCCTTATATTGTGCATCACAAGAACTGAAGTACATGTTCCAGCCAATGATTA
TTTCATACGACCACCTTTTTTATTCATTTGTGCCTCTTGTATACAGAATTACATATGCTG
TCCCCCGATTGCAACCACTGTTTCTGCCATGGGATTTTACATCTACAAATTGGCTGGTAA
TCTGGCTTTCTATACATTCCACATCTCAGCAAACAGAAGATCAATTAGCTTACAGTAAAC
AGAAAAACACAATAACACAATGACCGCCAATCTGTGTTTGTTTCTCCTTCCCATTCCAGA
ATATGCAGCCACGGAAACCATCCCATTTTGCTAGTTTCCTTCTACCCTTTCATGATGAAG
ACCTCCTAATGTCTAGAATGTTTGGACTCAGAGGGGAAACTCTTTCTGAAGGACGTCAAG
GTTGCGGGAATCACATGCAGCAATCATATCACTGCGTGAAGCATTACTGATTGGAAAGGG
GGAAATGTGTTAGTAAGGCAAAATCATCATAAAAAAATTGCTCATGTTCACATGCAGATA
GAAGGAAGCGAATCGGACATACCCAAGTGAAATTCTCAAGTACTGCCAGGCATTGTCTGC
TTTCGGATTCATGGAAACCGCCCTTACATAGTACCGAATGGAATCTTCGTACAGACCCTG
CATAGAGAGCAGCTTAGAAAAGTATCTTGCAACAGGGGTTATATGTGAATGACTGTTATC
TGTTATCATAAGGATTTCTGTGTTGAGTTACCACACCATTGGATAAAGATAGATTTCAAT
GTTCATCGTTAATAAGTTAGGTAAACGAGTAGTCCACATTATAACCGTCTGCGCTTAATC
AACATTTATTCACTAGGTGACATTCATTGTACAAAAAGTGCCCCGAATTTTCATAATACT
GAGAGCATGATAACAAGACAAACATTTCAATACTAAAAGTGAAAGAACATAAACTCACTT
ATGTAATGATGAAAAGCGTGTTAGTGGGCCAGTGGAGTAATGTTAACTCAATATAAGGTT
TCTTATTTCGCATTGCAGGGAATTTGCGAAAAATACAATTATACAGCCAACAACATGATC
GAGTGATCATTGTGCTGCACAAGAATTACCTGGTTGGCATAGCTAATTCCCATATTAGCC
CATGCACGGACGTAGTTGGGCTTCAAATCTAGAGCCTGAAATAACAAGCAACAATTTGGG
ATTACTTCCAGGCACTTTTTAGTATACCACAATCAACATCTAAAGTAATAAGCCAAACAC
CTGGGGCACTCTTTAGTATACCCATATTTTTTGTAATGCACACTAAGATGGTTTCGAACA
GTCATCCACTTTGTAGTTTATACTAATAAATTAAGTGAAGGATGCAAATAAACATGTATT
TGTAGGATTGGACACCAAATCAATGGGATTACACTGCCTCACAAATAATTTGATTATATC
TCATCGGATATACTATAATGCAAGAAGCACTTGGGATGTAGCATACACGCAGCAGCAAAC
ACAATCTTGGTGTCAAATCACACAGAAACTTATCCACATTCCACACAGAGAGATTTAGCT
GCCCCAATCCCAATGTTTGTGATATGCGACATTACTTTCCAGATGTCAATCAGTCTATTA
GTTGATCATTTCAGATTTTTTTAGCTCCAACATGTATAGAGACACTATATTATAAAACTA
TTTTTGTCAGACGAGATCATACTGCTAGCTTTTGCAGTTTGCACCGCAAATACAACTGCC
AGAGCATTCCTTAAAAAGAAATTGCCAGAGTCTCTGCTAGAGACAAAGTGCTACTCCCTC
CATCCATATATATAGAGCTTAATACATTTTTCAAGGTTGTCTTTGACCATTGATAAGATT
AATAATATATGAGATGTATGGTATAAATATTATATCATTAGAAACTCCTTTCACATACGA
ATTTGATTATATGATTTGTGTAAAATGCATATCACATATTATCGTTCTAACCCGTGGTCA
AATTTAACCTCAAAAAATGTATTAGGCCCTACATATATGGATGGAGGGAGTATACTTCTT
GAACCAAGCATATAAATACACTTAAACAGAACGAGGCTTTCACCAAAGTTGAAGTTCACG
CACGTTCCAAAAAATAATTACCTGCTGGTATGCCAGTACGGCATCAGCACTCTGGATGCT
GTTTGCTTGGGTCGCACCGAGCTTGTTCCAAAGAGAATAGTCTTGTGGTTTCAGCTGTAG
TGCCGTCTTAAATGAAGCTATAGCTTTATCATATTCTCTTGATAAGTTGTACAAGACACC
CAGAACTATGTGGACATCAGCATCCTCAGGCGACATCTGAGCAGCTTCATTGAACAATCT
AACAACCTGGTGAGAGGTAGTTGTTTAGTATCCTAAACTAATAACTTCTAGTAAGATTGG
AAAACAGATTGTACAGACACATGATTACAATTAATAATATCTCGCAGAAAGGTACAATAA
ACTGAGACAGTTATACAGAATACCATTTGGAAGCTGGAGATGGAAAGGGTTTAACAAGTT
AAAATTGTTTGTTTGATGCACCATCATTATGAATTACATATCCCTCACTTACATCTGGAC
CATATGGTGAATCAGTTTGGTGGGGAGGGACGATACCCCCATACTTTGGATGATTCTGAA
GCCACCTCGAAAGATATCTTAATGCTTCTCCCTGTTCCAACTCTGCAGTAATCATATAAG
ATAATAGATCCTCTCATGATGGTATACAAAAATATTGAAGTATAAAAAACGAAAGTCGGG
CTATTTCGACAAATTTCCTGCTTCAACAGAACTTCAAAATATATTAGAACATGTTATGAG
CACAACTATTGCAGTATTGAGGCTTGGATCATTGGGAAGTTTTTCTAACTGTAAATGAAA
ATTGAAAAAGCTGGAAGATGGGTTAGTTTTTACAATTGAAAGTAGCTTACACAACGCAGA
TACCTGCTAACTTCCAATCCTACCTTCTACCACTTTGTTTCTTATAAGACAAATTCCAGC
AGATTAAGCAGGTCACTGAAATGCTCACATAAATAACACTCACCGTTTGTGTGACTGACA
CCAAGAGAAAGAAGAACTTCTAAGTTGGTAGGATTGGCCTCCTGGGCACGCAGCATTGCA
GCTATGGCCTGAAAGCAAGGAAATGAATTAATAACAGCAGACTCTTTTAGCAAAGAAGAA
GCATGGAGCCCATCTCATAGACCCCAAGATTCTTAGAACTAAAAAATTAATTTATTTTGT
ACTCCCTCTGTATCTAAATACTTGTTGTTAGGGAACACTACTACAAGTATTGTGTTACAG
AGGGAGTATATATGAATATCTAACTCTTGTGAGGTGAATGGTTCACATCATCAGTCACGA
GAATTAGCATATTGCTTTGGCCTTTAAGACTAGATAAAACAATATTCCTTGAAAATGATC
TAAACTCGGTCATGAACAAACATGATGCATCCAATACATCCATGCTGGACATAGTGACAA
TAATCCGTTCAACATATGCCGAACATGTATTATAATACTTGGTATAGGGATGAAAACGGA
GCGGAATCTTTCTGTCTGGTCCAAAGTAAAACGGAAACGGGGAAAAAAATCGAGAAAACG
CAAAGAGCCTTGCGTTTCTTTGTATTGAAAAGAAGGGGGATTACAACCTCCTAAGAGGCA
ATTACAGCATTGTTACAAGAGGGTTAGTGGACATCCCAGGATGGGGGCATGACTACCCTA
AGCCCTTTGGCCCCGGCTCTCGCCCAACACCTAATCTCATCTTTGATCCTACCCAAGAGC
TCGTCGAGCGATGGAGTGATATGGTCAAAGACACACGCATTCCTGTGTTTCCATATCATC
CAGGGCACCAGGAGCGCGGCTGACCTCAGCGCCTTGCGTAGCGATGGTGGTGTGGCATCC
CTCGCCCTCCTCCCCCCGTCCTGGATGGGGGCGTGCAG