Contig Data
morexGenes
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Map Locations of contig_1562484 (3923 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_1562484

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_12083 3 1700 bp MLOC_12083.2 Available Available LOC_Os02g51040.1, FRAME:-3, EVALUE:1e-132, 13102.m05799 protein expansin precursor, putative, expressed





CDS Structure of MLOC_12083






Contig Sequence (3923 bp)

>contig_1562484 3923 assembly3_WGSMorex_rbca.fasta
AAGTGAAATAACAGCCAAAGAAGGGATAAATANNNNNNNNNNNNNNNGATGCAAAATGGA
CGTATCAGCGGCTAGGAAAGATGTGGAGAGAGTTTTTGGGATTTTTCAAGCCCAATTTGC
TATTGTGAGAGGACCGACGAGGTTTTGGGATCAGGAGACCCTTTGATACATCATGAAGGC
GTGCGTGATCATGCATAACATGATCATAGAGAACGAGCGTGGTCAAAATGCCATCTGTGG
CACCTATTAGTTGATGGGACATCTGGTTCTACCAAGGCGAGGTGGAGATCGGGTTGAGCG
CTTCCTTGACATGTACCATGCCATTCGAGACTCCGATGTGCACGATCTTGAGAAGGATCT
CATGGAGGAGTGATGGACATGGAAGGCAAACATCAAGTCGCGCACTTGATTCTATTCTAT
TTGATGAACAATTTCATGTTGTGTGTTGATTTGTGTGCTATTTGATGAACCGTTTGATGA
ACTAGACATGTTGTGTTGTAATAAATTAACTACTATTTAATTATTATTTGTTTGAAATAT
TTTAGATCATTTATGATATCATTTGTTTGTCATAGGTTTCAAATATGTAAAAAAAAATGA
GTGGTACGGTTCGAGTGGGGTGCCCTAAATTAGGGTCTGTTTAGTTCCAAATAAGACCCT
GTTTTGTTCCAAATAAGTCATCAACTTATAAGTTGAAAAGTGCAAAAAGTGACTTATTTT
GTCAAACAAACCCAACTTATAAATCACCCCAACTTATAAGTCATAAGTTGCTCCATCCCA
ACTTAAAACTTATAAGTCACCTACTTTTGCATGAGAAGGTGACTTATAAGCCACATGACA
ACCAAACAGACGTGACTTATAAGTCACTGATTTTAAGTCACCTGACTTATAAGTCACCTG
ACTTATAAGTCACGTGACTTATTAAAACCAAACGGGCCTAAGTCACCAACTTATAAGTTG
AAAAGTGGAAAAAGTGACTTATTTTGTCAAACAGAATAAGTCATAAGTTGCTCCACCCCA
ATTTAAAACTTATAAGTCACCCAATTTAAAACTTATAAGTCACCCACTTTTGCCTGGTTC
TCATCACCTTTTGTGTGGTCAGATGACTTATAAGTTAGATGACAACCAAATAAGCGTGAC
GTATAAGTTACTGTTTTTAAGTCACTTGATTTATAAGTCAGATGACAACCAAACATGCGT
GACTTATAAGTCACTGGTTTTAAGTCAGATGACAACCAAACATGCGTAGCTGTTAAAGAA
TGCGTCCTAAAATAAAACATCTGGAAATGCAGAAAAGTTTTTCGTGACCTATAACTGCAG
ATAGCATACGACATCTGTTAGAGATGCTCTTAATCGTGAGGTATGAAGGAACTTTTTATG
GTGAGGTATGAGGGGGTTTGAGGCGCCCAGCTAACGACATCACCATGTAATGAGAAACAG
TATACAGATCTAATGGGAATCGTATCCATGGAATCGTATCCATGCTCACCTAACAAGCTC
CGAACATTCGTCGGCAAGGCTCTGCTTGCTGGCACTAAGAAACTGTATGAACTAAAATTA
AACATTGTTTGCTAACCCAACTGACATTGACTCACAATGGAAAGTAACAGAGTAACATGC
ATATTATTACTAATCTACGTTAACATAGGTTGAAGTTTTTCAATGGAATGTTCAGAGATC
GATCAGAAAAGATTTGGGCGTCAGTTTAAATTATTTAGCTCATTTGCGACTAGACAAGAT
AGCATTGCAAGATGGGAGTAGTACTCAAAAGTGAAACATCCAAAAGCCAGAGGCTCAAAT
TAACTCGGTCTGAGGTTACATCACAGCCAAGCACACACCACACACACAAACAAGGAACAC
ACCAAAACATCCTCGAGACAAAGGCCACTACCCAAGAGGCCCATTCGCTAATCGGCGGGT
GATACAAGGCGGCATCGGTTAATCAAACCAGCCTTTACCACCGCTGCCATCCTAGCCAAA
ACCTCGTTCAAATGTTCAGCTAGCACACACACCACACCAGGACAATTAAAAGCCCATGAT
AATACCAGGCCTAACTACCTGCTACTAACTCGAATCCCCACGAACGTATGCCTGAGGAAG
GACCAACCATAAAACCATGGCGCTTCCCAGCACGCTCCAATCGGGAGGTTGACGACGACC
ACCACTCGCTAAAACCACTACTACAACCAGATGGTACTGCGTCTGCGGATGATGCAGGCG
CTCAGTGGAACTGGGCGCCGCTGAAGGTCTGGCCGAATGACCAGCCGCGCGGGACGGCGT
TGTTGGAGACCACGGACTGGCCGTTGCCTGCCGTCACGCGGAACGAGAGGCCCTGCCCGT
CGAGCAGCGCGTTGCTCTGCCAGTTCTGCCCCCAGTTGCGTGAGAGCGCCTGCCACGCCG
CCGAGCGCGTCGACTTGACGGACACCGCGTGCACGTCGCCGGGGCCACCCACGTTGGTGA
CCAGCACCAGGTTGAAGTACGAGTGGCCATTGATCGTGAACCTGATGCCGCCCTTCTTCT
GGCACGCCACCCTGCCCGAGAAGAACAACGTGACCGTCAGTGTTACTTCCCAAACAGTTG
AGGGAAGATTGACAAGGTGACAAAAGGGGGCGAAAGAAGGGGACAAACCTGCGGTAGGAG
ACGGGGACAATGCCGGCGCGGTAGAGCGCGATGCGCTGGAAGACGGGCTGGGACATGTCG
AAGTGGGCGCGGGGAGGGTTGCACCAGCCGCCGGCGTCGGACGACTCGCCGAAGTTGGGC
GGGCAGAAGTTGGTGGCAGTCACCACGGTGGAGCCGGGGAGGCAGGCGTGGGGCGCGCCG
GCCTCGGTGCCGCCCGGGTCGCACCGCACCTCGAAGCAGGCCCCGCAGCTGAGGCCGTTG
TTGAAGAGCGCCGTGCTCAGGGCCGCCGTGTTGGAGCCGTACCCCGTGCTGTAGAGGTTC
CCGTAGCCGCACGCCCCGCCTGCACGCGCGCAGCAGCAAACGGTAAGGACCGGAAACGGC
ATCACAGATGCGGCAGGAAGTAACATACAATGATGTGAGCGAAGGGCTTGTTAAATACGT
ACCCATGGTGCCGGAAGCGTCACCGCCGCCGTAGAAGGTGGCGTGAGCGGACGCCCAGGC
GCCACCGCCGAGCGGCGCGTGGGCGTGGTGACCGATGCCAGGCCCGTGCCGATGGACCAG
GCCGTGCCCGGGCAGGTGCGGGCCACGCCCCTGCCCACGGGACAGAGCGGGCGGGAGCAG
CGCGGCCACGAGGAGGGCGAGGAGGGCTGCTCGGGCGGGCGCCATTGGCACGGTGGAGAG
CGGCAGCCTGGTGCGCGCTGAGGCCGGCGGGGGTGTGTGGAGTGCGGTGGGGATGTGCTC
TGGGGGTGGGCTGGGATCTCATAAATAGAGGGACGGCGTGCGGCGCGGCGCGAACGGTTT
CGAAACGGTGCGGCGCAGTGTGAGCGTGGAGTGAGGACTGGGGCGGGCACGCGGGTGGGG
GCCCGCGGTGGGAAAGCAGCTGGTGGAGCGGCACGGAGGCCGCGACACGGGTTTCCTGGG
GCGTTGGGGGGCGTGGGCGGGAGTGGTAAAAGCAGCAGCAGCAGTAGGCAGCAGCCAAGA
CAAAAGCTGTGGTGGTGGAGTAAAGGAGTGGGCGGAGAGGTGGACTGGTTCGGGCGTACT
GCCGCGCGGCGGTGCGAAGTTTGGAGGGGGGCTGAGCGGGAGCTAGCTAGAGTGGTAGGC
TTGCTTGGTTCGCGGCCAATTACAGATGAATAGAATGGCTCAGGCTGGCCATAGTGGGAG
TAACTAAGACCAAATACAATAAGATAGAGTCAGCAGTCTTTAAGCATTAAAATATTATAT
TTTTACTAAGTTGGATGGGAGAGAAGATGAGAGAGAAGTGAAGCGGGCTCTTCGTGAAGA
GCCAGCTCTAGCACGTGCTTCTA